LOC111195024 (LOC108437794)


Basic Information

Item Value
gene id LOC111195024
gene name LOC108437794
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10736746 ~ 10739405 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681043.1
AGGAATTTTCACATATGGCAAGGGCATCCTAAATTGGAATTTAGTTTGTGGTtggaaaaaacagacagaaacgATGGGCTTCACAACCAGTGGAATAGATGTCTGTTTGAGGACGCTGCTGCTTTTGTTTAGTTGGGATTTCTCTCGTGGTCAGATTTCTTACTCCATCTCAGAGGAGGTAAAGAAGGGCACTATTGTTGGGAATTTGCCGAAGGATCTTAATGTCGACGTCCAGGAGCTGCAGTCGCGCATGTTACAGGTCGTGGCTGGATCTAATAAGCGCTACTTCGATGTGAATCTGAAAACGGGAGCGCTGTTTGTGAACGACAGGCTGGACAGGGAGGAGCTGTGTGAGAGTAAGCAGAAATGCTCCCTCAACATCGAGGTAATGGCACAGAACCCCATAAAGCTCTATCGTGTTGAGGTGAACGTAGCAGACATTAACGATCATTTTCCGGTTTTCCCACTGCAGAAGTTAGTgaaaaacattactgaaaacgTTGTTACTGGGGATCGTTTTTCTCTGCCTGCAGCTCGTGATTTGGATGTCGGAATAAACTCTGTGAAAACCTACAAGCTCAGTCACAACGATCATTTCTCTCTGGATATTCAAAGCTATGGAGAACATAGTGTTTCAACAGAGTTGGTGTTGCAAAAGCCTCTAGATCGAGAAAAACAGTCTGTTATAAATCTCATACTGACGGCTGTTGATGGAGGAAATCCTGTCAAATCTGGAACAATGGAAATAATTGTTAACGTGTTAGATATTAACGACAATAATCCAGTGTTTAGCAAACCTCTTTATAAAGTTAAGATAAAGGAAAACGTGCCATTTGGGACAAAAATCTTAACTGTCACTGCCACCGACCCAGATGATGGCGTGAATGGAGACATTGTTTATACTCTTGTAGAGCAAGAAGGGAACTCTGCATCTcgtttattttctgtaaatccgGAAAATGGAGATATCAGCGTTAAAGGCAATATTGATTACGAGGAAAATCCAGCTATTGAACTGAGAGTACAGGCTCAGGACAAAAGTATATCTCCAAGACATACGAATTGTAAAGTATTAATTGAAGTTGAAGATATAAATGACAATGTTCCTGAGATTTCAGTGACACTGCTTATGAGCTCAGTCAGTGAGGACACCAAACCTGGCGCTGACGTAGCTTTGATTACAGTTTCAGATAAAGATGATGGCAAAAATGGAAAAGTAGATTGTAAGATAGTAGGGACGAGCCCATTCAGACTGCAGTCATCCTACAAAAACTCATATTCTCTTGTAGTAAACGAACCACTGGACAGAGAACAGGTATCCCAATATAATATCACAGTAATAGCCAGTGATGAAGgctctccttctctttccagCACTGCAATAATAGCTGTTCATATTTCTGACGTAAATGACAACTCACCTGCATTTCAATCACCTGTGATAAATATCAGTGTCAAAGAGAACAGTCCAGTTGGAGGGTTGCTGGCGACCATAACAGCCCACGACTCAGATATCGGTGAAAATGCTCATGTTTCGTATTCTTTAATTGATGGAGAGAGCAGTAGAACACAAGTGTCCACTTTAATGAACATAAATTCCCTCACAGGTGAGCTGTATAGCTTGCAGTCTTTCAATTATGAGGAAACAAAACAGATACAGTTTAAAGTTCAGGCTACAGACGCTGGGATCCCTGCACTCAGCGGCAACGTGACTGTAAATGTCTTTATTCTGGATGAGAATGACAACAGGCCTGTTATTTTAGCTCCTTATTCTGAAGCTGGAACAGTAAACACTGAGAACATCCCCTACTCTGCTGAAGCAGGATACTTTGTAGCTAAaatcagagctgtagatgctgATTCTGGTTATAACGCACTGCTGTCTTATCACATCACTGAACCTAAGGGGAATAATCTTTTTCGCGTCGGAAGCAGCTCTGGAGAAATAAGGACTAAAAGACGAATGAGTGACAATGACTTAAAAACTCACCCTCTTGTTCTAACAGTGTGTGACCATGGAGAACCTTCCCTCTCAGCAACAGTGAGTGTGGATGTTGTAGTTTTGGAAAGTATTGACAGCGTGCAGCCTTCCCTAAGACAAGTGCCAATGAAAGAGGAAGGTTTCTCTGATCTGAATCTTTATCTGCTCATCGCTATTGTGTCAGTGTCAGTGATCTTCCTGCTGAGCCTCATCACTTTAATTGCAGCTAAATGCTACAGGTCAGATGACCCTTTCAGCAGATGCAGCCCTCCAGTGGTCACTACACACCCTGACGGGAGCTGGTCTTACTCTAAGTCAACTCAACAGTACGACGTGTGTTTTAGCTCAGACACGCTGAAGAGTGACGTAGTGGTTTTCCCCTCGCCGTTTCCGCCTGTTGACGCAGAGCTCATCAGCATTAATGGAGGAGATACTTTCACACGGACACAAACTCTCCCCAGCAGTGAGAAGGTAAGGCGTGACTTGCCTTCTAAGTTGCTTGATCGTATTTACttgcacaatttaaaaaaaactgcttaaaaatcaCTAAATCATTATTCACATGCACTTTCGACATCGCATACGATTGATGTATTTAAATTAGATGTATTTAGAGATTTAGTATTTGAAGAAACTAACGTAAGTTTTCCGAATAATTGCCAGTATTGTCATTTTTATG

Function

NR:

description
PREDICTED: protocadherin alpha-2-like

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681043.1 True 2660 mRNA 0.42 1 10736746 10739405

Neighbor

gene id symbol gene type direction distance location
LOC103030205 NA coding upstream 907 10732824 ~ 10735839 (+)
LOC103030520 NA coding upstream 6081 10728335 ~ 10730665 (+)
LOC111195104 NA coding upstream 13994 10720527 ~ 10722752 (+)
LOC107197092 NA coding upstream 17420 10716994 ~ 10719326 (+)
LOC111195103 NA coding upstream 20301 10714106 ~ 10716445 (+)
LOC111195026 LOC108437794 coding downstream 1022 10740427 ~ 10744282 (+)
LOC111195027 LOC108437794 coding downstream 6137 10745542 ~ 10748152 (+)
LOC103029876 NA coding downstream 17310 10756715 ~ 10758402 (+)
LOC103026865 LOC108437806,LOC108277182,LOC107687386,LOC107678002,LOC107552069,LOC107586137,LOC107742371,LOC105905983 coding downstream 41391 10780796 ~ 10817393 (+)
LOC103021388 LOC105909655,LOC105909654,LOC105905981,LOC105894871,LOC108276796,LOC105909651,LOC108276799,LOC108276792 coding downstream 82118 10821523 ~ 10826252 (+)
G174813 NA non-coding upstream 60745 10675716 ~ 10676001 (+)
G174812 NA non-coding upstream 65575 10670898 ~ 10671171 (+)
G174811 NA non-coding upstream 69566 10666950 ~ 10667180 (+)
G174810 NA non-coding upstream 71318 10665077 ~ 10665428 (+)
G174809 LOC103034963,LOC108437818,LOC108276546 non-coding upstream 73252 10661290 ~ 10663494 (+)
G174930 NA non-coding downstream 348314 11087719 ~ 11088839 (+)
LOC103022678 NA non-coding downstream 354312 11093717 ~ 11095900 (+)
G174944 NA non-coding downstream 398144 11137549 ~ 11137957 (+)
G174964 NA non-coding downstream 451076 11190481 ~ 11265122 (+)
G174983 NA non-coding downstream 661988 11401393 ~ 11401613 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 104981 10621028 ~ 10631765 (+)
rexo2 NA other upstream 1583613 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 2184136 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 2570084 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 2811306 7904595 ~ 7925440 (+)
G174874 LOC108437803 other downstream 92763 10832168 ~ 11019418 (+)
G174994 NA other downstream 690466 11429871 ~ 11436530 (+)
G175108 NA other downstream 1169467 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 1451951 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 1784736 12524141 ~ 12540201 (+)

Expression


Co-expression Network