LOC111195025


Basic Information

Item Value
gene id LOC111195025
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10710507 ~ 10713283 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681044.1
CAGTACTGATGAGCGCTAACGTGGATTACATGTATTCGTCtcgttatatatatttttgtttggtttatagATGAATGTGTGGGTCAGCAGATATTTTTCGTTAGACGTAATCAACATTAGAAGGTAGGAATACAATCATTAACGCATTTAAGATGACGGGACGCTTTTGGATCGTGTCTCTGTGCTGGATTGGGCTTTGTTGCCAGGTCGTCATGTCGGGCCACGCTGCTTACTCTGTATTCGAGGAGGTGAGCCCTGGCACAGTAGTTGGAAATTTAGCCAAGGACTTGAGCCTTAATGTGGCCGATTTGGAGGCACGCAAGCTTCGCATCGTGCCCGGGTCGCAGAAGAAACATTTCGATGTGGATTTAAAGACCGGTGTCCTTTTTGTGTTGGATGTAATAGATAGAGAACAGCTTTGTCCGAACAGTTTGGCCTGCACAGAGACTTTGGAGGCTATTGTTAACGATCCTTTACAGATGCATAGCGTTGAAATAAAGATACTGGACACAAACGACCACTCCCCTGTTTTTCCAGGAAAATCACAAACTATTCGTGTAGCGGAGTCTGCTTTGGTAGGATCTAAATTCCCTTTGCTGGGAGCGGATGATCCAGATATTGGAATCAACTCGATAAGTTCATATAAACTGTCTCAGAATGCCTTTTTCAACTTGGAGGTGCATACAGATGCCGATCAGGGGCCATCTGCTGAACTGGTGCTGTTGAAAAGCCTAGACCGAGAGAGGCAGGCTACACTCCGGCTCGTGTTGACTGCTGTAGACGGGGGTAGACCACCACGATCCGGGACGACTGAAATACACGTAGTAGTGTTAGATGCTAATGATAACGCACCTGCTTTCTCCAAATCTGTGTATAAAGTTTCGGTTCCAGAAAATACTGCCATTGGCACTtctgttttaaaagtaaatgcAACCGATCTCGACGAAGACGTGCATGGTGAGGTAAAATATTCTTTTAAGCAAGGTCAAAAAGGAATTTCGGATACGTTTTCCATTGATTTTAACACGGGAGAAATTTCATTGATTGGTGAGCTCGACTATGAGAGCACCGGTGCGTACGAAATTCGTGTTGAAGCTCGAGATGGTGGATCTACTCCACTGGCATCTCACTGTAAAGTCCTAGTAGAGGTGGTGGATGTTAACGATAATGCACCAGAAATTAAACTATCCTCCCTTTTGGACAGTGTGCCTGAGGATTCCAGGAAGGGCACAGTCATTGCCTTGATCACCGTGCAAGACAAAGATGGAGGTAAAAATGGAAAAGTGCACTGTTTCATGTCCAAGAACTCTCCATTCGTGCTTGAGTCCACCCAAGGAAAGTATTACTCACTTGTGTTGAGTGGTGCGCTAGATAGagaagaaaaacagatttataatGTTTCAATAACTGCCATAGATGAAGGTACACCCCCTCTATCCAGCACTACTGTTGTAACTGTCCGTGTTTCAGATGTTAATGATAATCCACCTCGCTTCCCAGAAGCGTCTGTCAATGTTTATGTAAAGGAGAACAGCCCAGCAGGCGGGTTAATAGCCGTGGTCTCTGCTCATGATATTGATGGTGGTGAAAATTCTCGCATAACATACTCATTATTTCACAGCTCTGGGATATCTTTATCAGCATCGATTAGCATTAACTCTGTCACTGGAGAAATGTACAGCATGCAGTCTTTCAACTACGAGGAAATTAAGCATTTTCAGTTTCAAGTTCAGGCTACAGACTCTGGAACACCTCCACTCAGCAGCAACGTGACTTTGAATGTTTTTATACTGGATGAGAATGACAACAATCCTGTTATTTTACCTCCTTATTCTGAAGCTGTGTCAGTAAACACTGAGAACATTCCATATTCTGCTGAAGCGGGTTACTTTGTGGCTAAaatcagagctgtagatgctgATTCTGGTTATAATGCACTGCTGTCTTATCACGTCACGGAACCTAAGGGGAGTAATCTGTTTCGCGTCGGAACCAGCTCTGGAGAAATAAGGACTAAAAGACGAATGAGTGACAATGACTTAAAAACTCACCCTCTTATTATAACAGTGTGTGACCATGGAGAACCGTCCCTCTCAGCAACAGTGAGTGTAGATGTTGTAGTGGTTGAACGTGTGGAGAGCGTGCGGCCTTCCCTAAGTCAAGTGCCGATGAAGGAGGATAACTTCTCTGATCTGAATCTGTATCTGCTCATCGCTGTTGTCTCAGTGTCAGTGATCTTTCTGTTGTGCCTCATTGCTTTAATAGCAGCTAAATGCTACAGGTCAGATGACCCTTTCAGCAGATGCAGCCCTCCAGTGGTCACTACACACCCTGACGGGAGCTGGTCTTACTCTAAGTCAACTCAACAGTACGACGTGTGTTTTAGCTCAGACACGCTGAAGAGTGATGTAGTGGTGTTTCCCTCGCCGTTTCCGCCTGTAGACGCAGAGCTCATCAGCATTAATGGAGGAGATACTTTCACACGGACACAAACTCTCCCCAGCAGTGAGAAGGTAAGGAGCAGTTGGTCAATTTGTTCTTTTGACATCAACATAAACAGTTGCTGGCTCTCGTTTATGAATCTATTTTTATGAATAACTTAGCGTTTCAGCACCACTAAGTGAATAGCGACAGATGCtgagaacaacaaaaaaaatcaatctatctatcttttggACTATCTATCGTGCGATCAATTTATCTATCGTACTTTCAGCCTGTCTCTCTATGTATCTTCACTCTTAATAAAAGGAACATTCTATGTaagacttaaaaat

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681044.1 True 2777 mRNA 0.44 1 10710507 10713283

Neighbor

gene id symbol gene type direction distance location
LOC111195028 LOC108437795 coding upstream 677 10707324 ~ 10709830 (+)
LOC107197089 LOC107197089,LOC108437815 coding upstream 5609 10696559 ~ 10704898 (+)
LOC103034638 LOC108437817 coding upstream 15045 10690842 ~ 10695462 (+)
LOC103029337 fbxw11,LOC108277126,LOC105905987,LOC106603254,LOC107687420,LOC106568099,LOC107678030 coding upstream 55704 10633834 ~ 10654803 (+)
LOC103035292 trpc7a,LOC108437819,LOC107552051,LOC107677994,LOC108277129,LOC107720592,LOC105905985,LOC106603261 coding upstream 96038 10588031 ~ 10614469 (+)
LOC111195103 NA coding downstream 823 10714106 ~ 10716445 (+)
LOC107197092 NA coding downstream 3711 10716994 ~ 10719326 (+)
LOC111195104 NA coding downstream 7244 10720527 ~ 10722752 (+)
LOC103030520 NA coding downstream 15052 10728335 ~ 10730665 (+)
LOC103030205 NA coding downstream 19541 10732824 ~ 10735839 (+)
G174813 NA non-coding upstream 34506 10675716 ~ 10676001 (+)
G174812 NA non-coding upstream 39336 10670898 ~ 10671171 (+)
G174811 NA non-coding upstream 43327 10666950 ~ 10667180 (+)
G174810 NA non-coding upstream 45079 10665077 ~ 10665428 (+)
G174809 LOC103034963,LOC108437818,LOC108276546 non-coding upstream 47013 10661290 ~ 10663494 (+)
G174930 NA non-coding downstream 374436 11087719 ~ 11088839 (+)
LOC103022678 NA non-coding downstream 380434 11093717 ~ 11095900 (+)
G174944 NA non-coding downstream 424266 11137549 ~ 11137957 (+)
G174964 NA non-coding downstream 477198 11190481 ~ 11265122 (+)
G174983 NA non-coding downstream 688110 11401393 ~ 11401613 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 78742 10621028 ~ 10631765 (+)
rexo2 NA other upstream 1557374 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 2157897 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 2543845 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 2785067 7904595 ~ 7925440 (+)
G174874 LOC108437803 other downstream 118885 10832168 ~ 11019418 (+)
G174994 NA other downstream 716588 11429871 ~ 11436530 (+)
G175108 NA other downstream 1195589 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 1478073 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 1810858 12524141 ~ 12540201 (+)

Expression


Co-expression Network