LOC111195027 (LOC108437794)


Basic Information

Item Value
gene id LOC111195027
gene name LOC108437794
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10745542 ~ 10748152 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681046.1
GTCTTAATTTATCTGGGTTTAAATAAGTACAGTTCTGAAGCCACAAGAGGTCACTGTTGACCGTGGTTTGAAGGTCTGGGTCTCATTATCAAAACTCCACCTTCTCGTAATCAGGCAGGGTTGGTGCGTAAAACTCAGAACACGTCGTATATCGCTATAGTCCTCGAATATGGCAAGGGCATCCTAAATAACGATTTAATCTGTGATTGGTATAAACGCGATGGGTTTCACAGCTAGTGGAGGCCGTTTCTTGATGAGGACGCtgctgcttttgttttgttggGATTTCTCTCGTGGTCAGATTTCTTACTCCATCTCAGAGGAGGTAAAGAAAGGCACTGTTGTTGGGAATTTGGCGAAGGATCTTAATGTCGACATCCAGGAGTTGCAATCGCGCGTGTTTCAGATCGTGGCTGGATCTAATACACGCTATTTCGACGTGAATGTGAAAACGGGAGTGCTGTTTGTGAACGACAGGCTGGACAGGGAGGAGCTGTGTGAGAGTAAGCAGAAATGCTCTCTCAACATCGAGGTAATGGCACAGAACCCCGTAAAGCTCTATCGGTTTGAAGTGAATATAGCAGACGTCAATGATAACTCTCCAGTTTTCCAACTGCAGAAGTTAGATAAAAACATATATGAAAACGTTGTTCCTGGGGATCGTTTTTCTCTGCCTGCAGCGCGTGATTTGGATATCGGTACGAACTCAGTAAAAACCTACATGCTCAGTCCTAACGAACATTTCTCTGTGGATGTGCAAAGCTATGGAGAGCAGAGTGTTTCAGCAGAGTTAGTGCTGCAAAAGCCTCTAGACCGAGAGAAACAGTCTGTAATTAAGCTAATATTGACGGCAGTTGATGGCGGAAAACCGGCCAAATCTGGGACAATGGAAATAATAGTTAACGTGTTGGATATAAATGACAACAATCCAGTGTTTAGCAAACCTCTGTATAAAGTTAAGATAAAGGAGAACGCGCCATTTGGGACAAAAATCTTAACTGTCACTGCCACCGACCCAGATGATGGTGTAAATGGAGACATTGTTTATACACTTGTAGAGCAACATGGAAACTCAGCAtctcatttattttctataaatcaggaacatggagatatcagcGTTAAAGGCAATATTAATTACGAGGAAACTTCAGCTATTGAACTAAGAGTACAAGCTCAGGACAAAAGCATTACTCCAAGACACACTAATTGTAAAGTGTTAATTGAAGTGGAGGATGTAAATGACAATGCCCCTGAGATTTTAGTGACTCTGCTAATGAGTTCTGTCAGTGAGGACACTAAACCTGGCGCTGATGTGGCTTTAATTACAGTTTCAGATAAAGATGATGGTAAAAATGGAAAAGTAGATTGTAAGATAGTAGGAACGAGTCCATTCAGACTGCAGTCATCCTACAAAAACTCATATTCTCTTGTAGTAAACGAACCACTGGATAGAGAACAGGTCTCCCAATATAGTATCACAGTAATAGCCAGTGATGAAGgctctccttctctttccagCACTGCAGTAATAGCTGTTCATATTTCTGACGTAAATGATAACTCACCTGTATTTCAAGCACCTGTGATAAATATCAGTGTCAAAGAGAACAGTCCAGTTGGAGGGTTGCTGGCGACCATAACAGCCCACGACGACGATATCGGTGAAAATGCTCATGTTTCGTATTCTTTAATTGATGGAGAGAGCAGTAGAACCCAAGTGTCCACTTTAATGAACATAAATTCTCTCACAGGTGAGCTGTATAGCTTGCAGTCTTTCAACTATGAGGAAACTAAACAGATTTCGTGCAAAGTTCAGGCTACAGACGCTGGGATCCCTGCACTCAGCAGCAATGTGACTGTAAATGTCTTTATTCTGGATGAGAATGACAACAGGCCTGTTATTTTAGCTCCTTATTCTGAAGCTGGAACAGTAAACACTGAGAACATCCCCTACTCTGCTGAAGCAGGATATTTTGTAGCTAAaatcagagctgtagatgctgATTCTGGTTATAACGCATTGCTGTCTTATCACATCACTGAACCCAAGGGGAATAATCTTTTCCGCGTCGGAGGCAGCTCTGGAGAAATAAGGACTAAAAGGCGAATGAGTGACAATGACTTAAAAACTCACCCCCTTGTTCTAACAGTGTGTGACCATGGAGAACCTTCCCTCTCAGCAACAGTGAGTGTGGATGTTGTAGTGGTTGAAAATTTGGACAGCGTGCAGCCTTTATTAAGAGAAGTGCCGATGAAAGAGGAGGGTTTCTCTGATCTGAATCTGTATCTGCTCATCGCTATTGTCTCAGTGTCAGTGATCTTTTTCCTGAGCCTCATCACTTTAATAGCAGCTAAATGTTACAAGTCTGAGGACGCTTTCAGCAGGTGCGGCCCTCCAGTAGTCACTACACACCCTGACGGGAGCTGGTCTTACTCTAAGTCTACTCAACAGTACGACGTGTGTTTTAGCTCAGACACGCTAAAGAGTGACGTAGTGGTTTTCCCCTCGCCGTTTCCGCCTGTAGACGCAGAGCTCATCAGCATTAATGGAGGAGATACTTTCACACGGACACAAACTCTCCCCAGCAATGAGAAGGTAAGAATGTGA

Function

NR:

description
PREDICTED: protocadherin alpha-2-like

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681046.1 True 2611 mRNA 0.43 1 10745542 10748152

Neighbor

gene id symbol gene type direction distance location
LOC111195026 LOC108437794 coding upstream 1260 10740427 ~ 10744282 (+)
LOC111195024 LOC108437794 coding upstream 6137 10736746 ~ 10739405 (+)
LOC103030205 NA coding upstream 9703 10732824 ~ 10735839 (+)
LOC103030520 NA coding upstream 14877 10728335 ~ 10730665 (+)
LOC111195104 NA coding upstream 22790 10720527 ~ 10722752 (+)
LOC103029876 NA coding downstream 8563 10756715 ~ 10758402 (+)
LOC103026865 LOC108437806,LOC108277182,LOC107687386,LOC107678002,LOC107552069,LOC107586137,LOC107742371,LOC105905983 coding downstream 32644 10780796 ~ 10817393 (+)
LOC103021388 LOC105909655,LOC105909654,LOC105905981,LOC105894871,LOC108276796,LOC105909651,LOC108276799,LOC108276792 coding downstream 73371 10821523 ~ 10826252 (+)
LOC111195105 NA coding downstream 78270 10826422 ~ 10830049 (+)
LOC107197471 NA coding downstream 82576 10830728 ~ 10838578 (+)
G174813 NA non-coding upstream 69541 10675716 ~ 10676001 (+)
G174812 NA non-coding upstream 74371 10670898 ~ 10671171 (+)
G174811 NA non-coding upstream 78362 10666950 ~ 10667180 (+)
G174810 NA non-coding upstream 80114 10665077 ~ 10665428 (+)
G174809 LOC103034963,LOC108437818,LOC108276546 non-coding upstream 82048 10661290 ~ 10663494 (+)
G174930 NA non-coding downstream 339567 11087719 ~ 11088839 (+)
LOC103022678 NA non-coding downstream 345565 11093717 ~ 11095900 (+)
G174944 NA non-coding downstream 389397 11137549 ~ 11137957 (+)
G174964 NA non-coding downstream 442329 11190481 ~ 11265122 (+)
G174983 NA non-coding downstream 653241 11401393 ~ 11401613 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 113777 10621028 ~ 10631765 (+)
rexo2 NA other upstream 1592409 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 2192932 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 2578880 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 2820102 7904595 ~ 7925440 (+)
G174874 LOC108437803 other downstream 84016 10832168 ~ 11019418 (+)
G174994 NA other downstream 681719 11429871 ~ 11436530 (+)
G175108 NA other downstream 1160720 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 1443204 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 1775989 12524141 ~ 12540201 (+)

Expression


Co-expression Network