LOC111195028 (LOC108437795)


Basic Information

Item Value
gene id LOC111195028
gene name LOC108437795
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10707324 ~ 10709830 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681047.1
TCAGTTAGGCTGTGTCGGCACTGTCGCCTTTCTGTAAAAGGATCTCGTCTAAAGAACAGTAATTCATGAATTTTGAAGAAAATTGATCAACTGCTTAACGACACTACATTGTGATTAATTCTACAACGTCGTGGACTATGGCTTCCTTTGCTGATTTATGGATTATTTATCTATATGTGCTCTTCTATTGTCTCCGGCATGTTGTGTCCCGTCAGATCGTGTACTCTGTATCCGAGGAGGTGAGCCCAGGGACGTTTGTTGGACCTTTAGCCAAGGATTTGAACTTAAAATTGGACGAGCTGGAGTCTCGAGCGCTAAGAATCGTTTCGACTTCGTCCAAAAAGCATTTTGACGTGAACATGAAAACAGGAGCACTGTTCGTGCAAAAAGCCATCGACAGAGAGGAGGTTTGCCCAAACAGCAACGTATGCACTGAAAGCTTAGAAGCAATAGTTAATAACCCTTTGAATGTGTACAGTATAGACGTAAAGATACTGGATGTTAATGATAACACGCCTACTTTTCGGGGAAAATATCAGCATATAAAGATATCTGAGCAAACAATGCCAGGAGCTAAATTTCCTCTACTGAGTGCTGAGGATCCAGACGTAGGAAGCAACTCGGTAGCTTCTTATAAACTCTCAAATAATCAGTTTTTTAGCTTGGAAGTAAACACTGAGGCTGAGAGTGGACCTTCCCCTGAACTTGTGTTACAAAAAGCTTTGGATAGAGAAAAGCAGGCTGAAATACAACTCATTCTCACTGCTGTCGATGGTGGAAGGCCAGCCCGATCAGGTACGGCTAGCATTGTTGTTAGCGTGTTAGATGCTAACGACAATGCCCCTACGTTCGCCAAACAAGTGTACAAAGCTCGGGTCCCAGAAAACGCAGCCGTTGGTATGGTTATATTAAAGCTCAATGCTACCGATCCAGACGAGGGAGTTAATGGGGAAATTATTTACACGTTTAAAGAAGGGCAAAAGGGGGTTTCAGACAGGTTCATTATAAACAGTAGCTCTGGAGAAATAGCCATAGCTGGACCTTTAGATTATGAAGACGTCAGTGCGTATGAACTGCGCGTGGAGGCTCGAGACAAAGGCCACAGTCCACTAGCATCTCATTGTAAAGTGCTAGTAGAGGTCTTGGACGTCAACGACAATGCGCCAGATATTAAACTCACATCGCTACTGGATAACGTCAGCGAAGGCGCCAAAAAGGGCTCAGttattgcatttattacagTTCAAGACAAAGACGAAGGTAAAAATGGAATAGTGCACTGTTCTATATCAAACAACTCTCCATTTATTTTGGAATCCACACAAGGGAAATATTATTCGCTTGTATTGGGGCAAGAGCTTGACAGAGAACAAAACGAGCTTTATAATGTATCAATAACAGCCACAGATGAAGGTATACCTCCTCTCTCCAGCACTACTGTCGTGACTGTTCGTGTTTATGATGTGAATGATAATCCACCTCGCTTCTTAGAACAGTTTGTTAATGTTTATGTAAAAGAGAACAGTCCAGCAGGCGGGTTAATAGCTCTGGTCTCTGCACAAGACATTGACATTGGTGAAAATTCCCAAGTCACCTACTCATTATTTGCTAAATCATATTTATCATCCGCTGTCAGTATTAACTCTATGACAGGAGAAATTTACAGTATGCAGTCTTTCAATtatgaagaaataaaacactttcaGTTCCAAGTTCAGGCTACCGACTCTGGAACACCTCCACTCAGCAGCAACGTGACTGTTAATGTATTCATCTTGGATGAAAATGACAACAGGCCTGTTACTTTACCTCCTTATTCTGAAGCTGGGTCAGTAAGTACTGAGAACATCCCCTATTCTGCTGAAGCAGGATACTTTGTGGGTAAaatcagagctgtagatgctgATTCTGGTTATAATGCACTGCTGTCTTATCACATCACTGAACCCAAGGGGAATAATCTTTTCCGCGTCGGAAGCAGCTCTGGAGAAATAAGGACTAAAAGACGATTGAGTGACAATGATTTAAAAACTCACCCCCTTGTTATAACAGTGTGTGACCATGGAGAACCGTCTCTCTCAGCTACAGTGAGTGTGGATGTTGTAGTGGTTGAAAATGTGGACAGCGTGCGGCCTTCCCTAAGTCAAGTGCCCATGAAGGAGGAGGGTTTCTCTGATCTGAACTTATATCTGCTCATCGCTATTGTCTCAGTGTCAGTGATCTTTCTGCTGAGCCTCATCGCTTTAATAGCAGCTAAATGCTACAGTTCAAATGACCCTTTCAGCAGATGCAGCCCTCCAGTGGTCACTACACACCCTGACGGGAGCTGGTCTTACTCTAAATCTACTCAGCAGTACGACGTGTGTTTTAGCTCAGACACGCTGAAGAGTGACGTAGTGGTTTTCCCCTCACCGTTTCCACCTGTAGACGCAGAGCTCATCAGCATTAATGGAGGAGATACTTTCACACGGACACAAACTCTCCCAAGCAGTGAGAAGGTAAGATga

Function

NR:

description
PREDICTED: protocadherin alpha-8-like

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681047.1 True 2507 mRNA 0.43 1 10707324 10709830

Neighbor

gene id symbol gene type direction distance location
LOC107197089 LOC107197089,LOC108437815 coding upstream 2426 10696559 ~ 10704898 (+)
LOC103034638 LOC108437817 coding upstream 11862 10690842 ~ 10695462 (+)
LOC103029337 fbxw11,LOC108277126,LOC105905987,LOC106603254,LOC107687420,LOC106568099,LOC107678030 coding upstream 52521 10633834 ~ 10654803 (+)
LOC103035292 trpc7a,LOC108437819,LOC107552051,LOC107677994,LOC108277129,LOC107720592,LOC105905985,LOC106603261 coding upstream 92855 10588031 ~ 10614469 (+)
LOC111194980 NA coding upstream 398631 10305916 ~ 10308693 (+)
LOC111195025 NA coding downstream 677 10710507 ~ 10713283 (+)
LOC111195103 NA coding downstream 4276 10714106 ~ 10716445 (+)
LOC107197092 NA coding downstream 7164 10716994 ~ 10719326 (+)
LOC111195104 NA coding downstream 10697 10720527 ~ 10722752 (+)
LOC103030520 NA coding downstream 18505 10728335 ~ 10730665 (+)
G174813 NA non-coding upstream 31323 10675716 ~ 10676001 (+)
G174812 NA non-coding upstream 36153 10670898 ~ 10671171 (+)
G174811 NA non-coding upstream 40144 10666950 ~ 10667180 (+)
G174810 NA non-coding upstream 41896 10665077 ~ 10665428 (+)
G174809 LOC103034963,LOC108437818,LOC108276546 non-coding upstream 43830 10661290 ~ 10663494 (+)
G174930 NA non-coding downstream 377889 11087719 ~ 11088839 (+)
LOC103022678 NA non-coding downstream 383887 11093717 ~ 11095900 (+)
G174944 NA non-coding downstream 427719 11137549 ~ 11137957 (+)
G174964 NA non-coding downstream 480651 11190481 ~ 11265122 (+)
G174983 NA non-coding downstream 691563 11401393 ~ 11401613 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 75559 10621028 ~ 10631765 (+)
rexo2 NA other upstream 1554191 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 2154714 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 2540662 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 2781884 7904595 ~ 7925440 (+)
G174874 LOC108437803 other downstream 122338 10832168 ~ 11019418 (+)
G174994 NA other downstream 720041 11429871 ~ 11436530 (+)
G175108 NA other downstream 1199042 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 1481526 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 1814311 12524141 ~ 12540201 (+)

Expression


Co-expression Network