LOC103029503


Basic Information

Item Value
gene id LOC103029503
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10925074 ~ 11019432 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681048.1
cacacattaatattaaacGTTAACAGTGAATATACGCTATTAGTTGTGTGATGAAGAAAGTAACTACGTAAATGTGCATACAGTTTTATGTAATttcaaagcacaatacattaaATATCCAAATATTATTACCTGCTTGTAGTTCCCTTTTTTGGCTCAGAGGGCCGCTGTTGAACTGCTGTGGGTTTGCGCTGTGGTTAAGCTCGTCTAACCCCTCTCAACGAATCTCCTTGTCCCCGAAAGAAAAGAATGAAGGCAGGTTATCCGTGCAGTGTATAAGTAATGCTATTGTAAAATAGCTTGCTGTAAACTAGTTACATATTCAATTTTTCGTTTCTGTGGATCCAAAAACACCGCTGTAAGGATGGGAATTTTGCTCATCTCAGATAAAGGAGTGTCCTTGTTTGCTTTATGGCATATCGTACTGCTTTTTCTGGTCTTTTGTTCTCGCATCGTGTTTGGGCAGATGACTTATTCCATTCCAGAGGAAATGCAGAAAGGCTCTACAATTGGAAATATCGCTCAGGATTTGGGTTTGGATCTGAAACGACTGAAGGCCGGGAGAGCTCGGATTTATACAGGCGATAATATGGAATACATTGAGCTCAACCGAGACAACGGACGACTTCTCATCAAAGAAAGCATTGATCGTGAGTCTCTGTGCGCAAAAATCACCCCATGTGCTCTGCATCTCCAAATGATTCTGGATAATCCGATGGAGTTATATTCTGTTACTGTCGAAATTAAAGATCTAAACGATAATTCCCCTTATTTTCAGAAGAGCGAAATTAGGTTTGAGATAAGCGAGTCAGCAGCGGTGGGGGCCAGATTCGTGTTGGGCAGAGCTGTGGATCCAGACGTGGGAGTCAATGGACTTAGTACTTATTCTCTTAACCCTACAAAGAACTTTGTTTTAGATGAGCAATCTGATGTGGGAAAAACTATAGAGATGGTGTTGCAACAACCCCTTGATCGAGAAAAGGAAGAACGATTAAATTTGTTGTTGACAGCGTTTGATGGAGGAGAACCACGGCTATCGGGCACAATGAATATTtatgtaaaagtactggatgcTAATGATAATGCGCCTGTTTTTTCCCAAAAGGCGTATAAAGCTACAGTAATTGAAAATGCAGCAAAAGGAACCAGACTGACATCCGTAAGCGCTACCGATTCAGATGAAGGCTCTAACAGTCTTGTGACCTATCACATATCTGACGCAGTAGACAACTCTGTGACTGACGTATTTGTTGTAGACTCCCAAAGTGGAGAGGTGACATTAAACGGTAAGATTGACTATGAAACATGCAACCATTATCAGCTTGATATCCAGGCTAGAGACCAGGGAGGGCTCTCTGACTCATGCAAGGTATTTATTGACGTATTAGACGTTAATGATCATCAGCCAGCAATTGACATCATTTCTATGTCCAGTTCTATATCCGAGGAGTCCAAGCCTAACACTGTCGTTGCCATGATAAAAGTAAATGACCCGGACTCGGGTGCAAATGGCCAAGTTCATTGTACCATCAGCGACAACATTCCATTTGCGGTGAATACACCATCCGATAATTTCTTTAGCCTGCGCACAGAGCAGGAACtggacagggagagagaggctGAGTACAACATCACTATGATGTGCTCTGATGAGGGAGTTCCCCCACTTTCCAGCAGCGTTTCTCTCCGTTTACAGATATCAGATGTTAATGATAATGCTCCAGTCTTTGAGAGAAGTAGCTACGAGGCCTTTGTGCTGGAGAACAACACACCAGGTCTCTCTATATTCAAAGTGAAGGCCAGGGATGCAGATTCGAATCAGAATGCCCGTGTTTCTTATATTTTAGAAGACAGTACTGTTAATGGGGTTCCTGTATCATCATATGTGTCTGTCAGTGCTGACAGTGGAGTCATTAATGCTGTACGCTCTTTCGACTATGAGCAGTTAAAGGACTTCCATTTCCGCGTAATTGCTCAGGATGGAGGCTCTCCTCCACTCAGTGGCAACGTGACAGTGACCATTGCAATCCAAGATCAGAACGACAACGCTCCTCAGGTACTGTATCCCGTACAGACTGGTGGATCTCTGGTGGCTGAGATTGTGCCTCGTTCAGCAGATGTTGGCTATCTTGTGACTAAAGTTGTGGCTGTTGATGTGGACTCTGGCCAGAACGCCTGGCTCTCCTACAAACTCCAGAAAGTTACAGACAGGGCACTGTTTGAAGTGGGACCACAGAATGGAGAGATACGGACTGTGCGCCAGGTCACTGATAAAGATGCTGTAAAACAGAAGCTCACTGTTGTTGTGGAGGATAACGGACAACCATGTCGTTCAGCTGTAGTTAATATTAACGTAGCTGTAGCGGACAGTTTCCCGGAAGTGCTGTCAGAATTTACAGACTTTACAAAAAGCAAAGAATACAACGATAACCTGacgttttatttagttttagcaCTGGCTGCTGTTTCTTTCCTCTTCATTACCTGTGTAGTTGTCATAATATCAGTGAAGATCTACAGGTGGAGACAGTCTCGTATTTTCTATAAATCCAATCTCCCAGTTATTCCGTACTATGCACCTGGATACACAGACACTGGAGTTACTGGAACTCAAATGTATGACGTTTGCATGACGACTAACTCGAGGAAGAGTGACTGCAAATATTCTACACTTGGTGGGCGGAGTGTTTTGATGGTGGACCCCAGTTTCTCAGAGACTATGCAGTTttcaacaaaagaaaataactttCTTGACGGTCAAGTATCTCCTGAGCTGCAAAAGCCACCTAACAATGACTGGCGCATGCCCCCAAACCAGAGACCCGGACCAAGTGGCCAGCACAGGTTCCACACCCTGCAGCAGAGATGGACTCCCTACGAGAAGTCCAGAGCTGGACCTCGTCCTGAGGAAGCTGGTGCAGGTGCAGTAGGTGGGACGGGACCATGGCCCAACCCCCCCACCGAAGCCGAACAGCTCCAGGCTCTGATGGCTGCAGCGAATGCAAATGAAGCTACCGCGACTTTGGGTCCTCGCTACAATGCTCAGTATGTCCCTGACTACCGCCAGAACGTCTACATCCCAGGCAGCACCGCTACGCTTACGGCTAacccccagcagcagcagatgccCCAGCAGGCTCTACCCCCACCACAAGCCCTGCCTCCAACAGAGGCTCCAAAGGCTGCCCCAACTCCGGCCAGCAAGAAGAAGGTCACCAAGAAAGACAAGAAGTAAGACGGAGTGAGAGAACAGACAGAGGGAGAATTAGCTGAGCTATATAGATCCGGGCATTTCTCCTCTGCACGTGTTAGCTTTTCCCTCTCTAGAATGTTGACACCCCTTAAACTCTAGGCTTATTGTTCATTAATACACACTATCCAGGATGATTGGGTACCTTCTATCACAGCTACTGTTTAAGGATGTTTCGATACAATTGCAAGGAATGGAAGTCGTAGAGTTTAAGGGGTTTATAATCAGAATATTCTGAGACATTTCAGCTGTATttggttttctgtttttttgaatTTGTATTTCTTAGTCTACGGTGTAACTCACCACTTCCTTTAATCATTATTGGTATTTTTTTGGTGTACTGCAACATCAAGAAGGACATAGTAGGATGAGATGTGTTTAGATCCCAAAGTGACCCTTTACGCAGGGAAGTCTGTCTTGTAAgatagattttaaaaaaaatactgattctTTGTCATGTTAAgttttttgtgttctttttaatGCAAAGTAGATCCTTCTTGTTgtgacaaatatttaaaaaaaatgtcaatgttAGAATTCTCAAGAGGATGTGCCATAGCTCTGCCCCAAcccttattatattattttttttttttgcatgctcCACTTTGACATCAGTAAGGGTATTGAAAATGAACTATGCAGTGTGGCAAAGATGTTAAAGCAAAGATGCAAATTTCGGTAAATGCTAAAAATGATTAGAATTAGAGAATGCATTTCTTTGTAAACCAGCAGCAACTGAAAAGCTGGACTGAAAAGTTCTAAGAAAGTAAAAACCTGGTATCATTCTAAAAAGCGAGTTAGAAACACCCATCAATGTTACTGCGATACTATTAATAGTCGTAAATATCAATCCTGTGGACTTGCATTAGATAATGTTTGCCATGTATAAAACCTTGGATAAGGTGGCAGATACCCAGACTGTTAGCCTGTGTGTTATGCCATATTGGTTAAGTGTTAGTGAACAGGGGCTTGTGCTCCAAGAGTGATGAAAAAGTGCTTAAGCAGAAGATGACTGGGTTGGTGTGTCATTTGCTTGGGTTCTATGTTTGGGGTTGAGAAGAAGTTAGAAAGGCACTGGGTAACATAAGCACTGTACGCAGGTTTGATGCTCCAAAGTGGGCCTCACGCAAATGAAGGCAATTTCTGTAAAGACATTTCCAACTGAGAAGAACAACAGATCAGATAACTGGTCTTAAACTCTCGGTAGGCCACTCCATCCTTGGCCAGCTTCAAGAGAGTGGAATGAGGAGCTCCTTACTCCTCAAAATTCTGCACAACCCTAATATAAATGCACCAACCCTTCATCACAGTGTAAATAAGATACAGTATGTAACCTGTCTGTATAAACTAGAGCCACAAGGTTCAGGCCAACACAGGAatgtttcagtattttttagaaaaacagaaaagaaaaaatacataaaaaaacataaaactgatCAAGTGTAGTGCTATAGATACAAAAGCTTCGAGCTCACTGACTAACTCAACTTGTACATAAAACCTGCAGTCTCCGCAAGACATGCAGCTTAGTAGCTTATAGGGCTTGTGAAAATGTGtgcatatttttgtgttttttccttctcttttactttatttcttcaATCATCTGAACatcaaaagcttaaaaaaaaaagaaacaaaaaaaaagcaaacctaTGGTTCCTAGCGTGCTCTACCCCCACCCCAACCCACCACCCACCTCTCTATAGTCTTCTGTGTTTGTAATTACAGTCAGCTGTTAATGCTACCGGAATGCCATTCCTGTCTGTTTAACTATGaacctataatatatataaatatatctatctAAATGTCTGTCTGCTGCTTGAATACCTTTCTGTATTCTACCGTGATAACCTTCCTTTAAAGCTTAGCGCTTCATgttatgcttttattttataacgCAGATATTTATAtggctgtttatttgtttatgttattGTTTACTAATGGAACACTTACATTTCAAATAAAAGTTTGTCAGAACTCACAA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16495 PCDHGA; protocadherin gamma subfamily A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681048.1 True 5255 mRNA 0.42 6 10925074 11019432

Neighbor

gene id symbol gene type direction distance location
LOC107197471 NA coding upstream 86496 10830728 ~ 10838578 (+)
LOC111195105 NA coding upstream 95025 10826422 ~ 10830049 (+)
LOC103021388 LOC105909655,LOC105909654,LOC105905981,LOC105894871,LOC108276796,LOC105909651,LOC108276799,LOC108276792 coding upstream 98822 10821523 ~ 10826252 (+)
LOC103026865 LOC108437806,LOC108277182,LOC107687386,LOC107678002,LOC107552069,LOC107586137,LOC107742371,LOC105905983 coding upstream 107681 10780796 ~ 10817393 (+)
LOC103029876 NA coding upstream 166672 10756715 ~ 10758402 (+)
LOC103022370 LOC103022370 coding downstream 62460 11081892 ~ 11084647 (+)
LOC103029829 NA coding downstream 94383 11113815 ~ 11125744 (+)
LOC103030157 NA coding downstream 135518 11154950 ~ 11158188 (+)
LOC103024145 kcnip1b,LOC103024145,LOC108444575,LOC107720696,LOC107552061,LOC102788752,LOC103363037,LOC107742366,LOC107676032,LOC107586147 coding downstream 230943 11250375 ~ 11322335 (+)
LOC103023833 LOC107678029 coding downstream 305456 11324888 ~ 11334033 (+)
G174813 NA non-coding upstream 249073 10675716 ~ 10676001 (+)
G174812 NA non-coding upstream 253903 10670898 ~ 10671171 (+)
G174811 NA non-coding upstream 257894 10666950 ~ 10667180 (+)
G174810 NA non-coding upstream 259646 10665077 ~ 10665428 (+)
G174809 LOC103034963,LOC108437818,LOC108276546 non-coding upstream 261580 10661290 ~ 10663494 (+)
G174930 NA non-coding downstream 68287 11087719 ~ 11088839 (+)
LOC103022678 NA non-coding downstream 74285 11093717 ~ 11095900 (+)
G174944 NA non-coding downstream 118117 11137549 ~ 11137957 (+)
G174964 NA non-coding downstream 171049 11190481 ~ 11265122 (+)
G174983 NA non-coding downstream 381961 11401393 ~ 11401613 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 293309 10621028 ~ 10631765 (+)
rexo2 NA other upstream 1771941 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 2372464 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 2758412 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 2999634 7904595 ~ 7925440 (+)
G174994 NA other downstream 410439 11429871 ~ 11436530 (+)
G175108 NA other downstream 889440 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 1171924 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 1504709 12524141 ~ 12540201 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 1720071 12739503 ~ 12745053 (+)

Expression


Co-expression Network