LOC107197471


Basic Information

Item Value
gene id LOC107197471
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10830728 ~ 10838578 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681050.1
GGCTCACAAGGCAGCGACGTTGAAGCATTgtgagattatttttttttgtaaactgcTTTTCCATACTTCGGTTGGgtatttgattttatattaatacattaatcaGAAAACAGGACTTTAATCTTGGCAACAGTGGATGTGAACCAGTTTCGACAGATTAACATGGAGAACACCGGATTATTTGCTCGTTCATTTTTGTTCAAGgtgatgtgtgttttgattaTGTTTTTGACGGCGAATGGAGATGTAAGTTATTCTGTTCCCGAGGAGAAAAAGATTGGCTCTGTGATTGGGAATCTGGCCAGGGATCTTGGAATTAATGTGAAGACGCTAACCTTGCGTAAAGCGCGTTTGGATGTCGACGAGGGCAGCAATCGATATTGTGACATAGACATGAATACTGGAGATCTGATTGTCGCTGAGAGAATCGACAGAGAACAGCTATGTGGACCCGCGACTACTTGTAcgttaaaatatgaaataattattgAATACCCTCTGGAATTACATCGCATTGTTATAGAAATTATTGACATAAATGACAACTCCCCTGCGTTTGCAAAAGAAATGATTACAGTCGAAATCAGTGAATTAGCTATTAAAGGCGCTCGCTATGCTGTGAATGAAGCACATGATGCAGACATAGGAATCAATTGCGTGCAGAGCTACAAACTGAAAGAAAATccttacttttcttttctttttcataaTAAACCTGGTCAGGAAAAATATGGCGAGTTAGTCCTTGAAAAAGAACTGGATCGTGAACAGGAGCAGGAGGTGAGGCTCTTTCTCACCGCCATCGATGGGGGAAAGCCACCTAGATCTGCCTCTATAGTTATTCAGGTTACTGTACTTGATGCTAATGATAACTCTCCACAGATATTATACCCATCTCCAGAAGGAAAGGCTTTAATGACTGAGATGGTCCCTAAAGCTGCTCTGTCAGGCTCTCTGGTCTCCAAGGTGATCGCTGTGGATGCTGACTCTGGACAGAATGCATGGCTTTCATATCACATCATAAAGTCTACTGATCCAGGACTTTTCACCATTGGCCTCCACACTGGAGAGATCAGGGCACAGCGGGACATTACTGaatctgacaacatgaagcagaacCTTGTTATTTCTGTGAAAGACAATGGACAGTCTCCTCTCTCTACAACctgttctgtatttttacttatttctgATAACCTCGCTGAAGTTCCAGAACTTAAAGACATGACTTATGAAGAGAACAACTCCAATCTTACGTCATATTTGATCATCGCACTTGTTTCAGTGTCAACTTTCTTTCTAACGTTCATTATCTTGATCCTGGCTGTGAGGTTTTGTCACAGAAGAAAGCCCAGACTGTTGTTTGATGGGGCAGTCGCTATTCCCAGCGCATATCTCCCTCCCAACTATGCAGAGGTTGAGGGAGCTGGAACACTCCGCAGTTCTTATAATTATGATGCGTATCTAACAACAGGCTCACGCACCAGTGACTTCAAGTTTGTCAGATCCTACAATGATAATACACTTCCTGCCAGTGGCACTCTCAAAATGTGCCAGGATGATCCCTTTGGTTCAAGCATTATCACCACTGATTGCATTGAGGTGAGCAATCTtattttatgagtttttttttgtatatatgtgtatgcaCAGCCAGATGTGTTGAACAATACTGGGTCTCCTTCATGTGACATTAGAAGTGGATTGGAGCATTTCATGGGCAGAATGAGTTATTAAACACTTTCAGTTGTCACAGGTGTATTAACTGGTATTTTTGGGTGCATACTGTACAGTTGTAGATTAATTTTGTTTGTCACTGTTGATATTCTTGCAGATCTATTTCGAAATTCTacactgcatttttttcctttttacatttttataaagttaATAGGTGTACTCTTATTGTATCTTTCATTCATGTTTATggattttttcat

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681050.1 True 1940 mRNA 0.40 2 10830728 10838578

Neighbor

gene id symbol gene type direction distance location
LOC111195105 NA coding upstream 679 10826422 ~ 10830049 (+)
LOC103021388 LOC105909655,LOC105909654,LOC105905981,LOC105894871,LOC108276796,LOC105909651,LOC108276799,LOC108276792 coding upstream 4476 10821523 ~ 10826252 (+)
LOC103026865 LOC108437806,LOC108277182,LOC107687386,LOC107678002,LOC107552069,LOC107586137,LOC107742371,LOC105905983 coding upstream 13335 10780796 ~ 10817393 (+)
LOC103029876 NA coding upstream 72326 10756715 ~ 10758402 (+)
LOC111195027 LOC108437794 coding upstream 82576 10745542 ~ 10748152 (+)
LOC103029503 NA coding downstream 86496 10925074 ~ 11019432 (+)
LOC111195029 NA coding downstream 160918 10999496 ~ 11002897 (+)
LOC103022370 LOC103022370 coding downstream 243314 11081892 ~ 11084647 (+)
LOC103029829 NA coding downstream 275237 11113815 ~ 11125744 (+)
LOC103030157 NA coding downstream 316372 11154950 ~ 11158188 (+)
G174813 NA non-coding upstream 154727 10675716 ~ 10676001 (+)
G174812 NA non-coding upstream 159557 10670898 ~ 10671171 (+)
G174811 NA non-coding upstream 163548 10666950 ~ 10667180 (+)
G174810 NA non-coding upstream 165300 10665077 ~ 10665428 (+)
G174809 LOC103034963,LOC108437818,LOC108276546 non-coding upstream 167234 10661290 ~ 10663494 (+)
G174930 NA non-coding downstream 249141 11087719 ~ 11088839 (+)
LOC103022678 NA non-coding downstream 255139 11093717 ~ 11095900 (+)
G174944 NA non-coding downstream 298971 11137549 ~ 11137957 (+)
G174964 NA non-coding downstream 351903 11190481 ~ 11265122 (+)
G174983 NA non-coding downstream 562815 11401393 ~ 11401613 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 198963 10621028 ~ 10631765 (+)
rexo2 NA other upstream 1677595 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 2278118 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 2664066 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 2905288 7904595 ~ 7925440 (+)
G174994 NA other downstream 591293 11429871 ~ 11436530 (+)
G175108 NA other downstream 1070294 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 1352778 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 1685563 12524141 ~ 12540201 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 1900925 12739503 ~ 12745053 (+)

Expression


Co-expression Network