LOC103023833 (LOC107678029)


Basic Information

Item Value
gene id LOC103023833
gene name LOC107678029
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 11324888 ~ 11334033 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681054.1
AGCTGTGGGCGTGTATAGAGTGGAACACAGTTCTCGGCCTCACTGCAGAGAACCTCCAGCTCAAAGATGGACGTGGAACAGATGGGTCCTCAGACTTTCCTTTACGGCTGTGAGCTGAAACAGGGAAAAGAAGTCACCTTCAACCCGGAAGATGACGACTTTGAGCATCAGTTATCCATCCGCATGGTCTGTGTTGACCCAGCAACCAAAGATGAGCTGAACATCGTGGAGGTTGAAGGACAGGACTCTGAGGGTCAGAAGGTCAAAGCTGTGCTGGCCACGCTCAAGCCGTCCACTCTGCCCAGCGTCTGTTTAGGGGGCTTTGAGATCGCTCCTCCTGTTGTTTTCAGGCTGCGGTCTGGTGCCGGTCCAATCCACATCAGCGGGCAGCACCTCGTCAtaacagGAGGTGATCAGTCTtttgatgaagaggaggaggaagatgaggaagagCTGAGGATGGCTTTGAAGAGGGCAGGTCCAGCAAATGCAAAATCCTCAaaaaagatgaagatggatgaagaGGAGGACGATGATGACGAGGACGACGATGATGACGATATggaggatgatgatgacgaggaggatgatgaggaagaggaggaagagacaCCTGTGAAAGTACAGCCAAAGAAGCCCGCAGCTAAACCCCAGACTCCCGCACAGAACGGCAAAGGACCCAAGCCCAACACGCCAGCTGCCAAAAAGGACCAAAAGACACCTGATACTGGAAAGAAGAATAACAACAAACCACAGACACCCAAAACCCCGAAAACTCCACAAGCTCCTCTGTCCATCCCAGAGATCAAAGCCAAAATTTTGGCCTCTGTTgagaagGGAGTGTCTCTGCCGAAACTCCAACCCAAGTTTGAGAACCTTGTGAAGAACGGTTACAAAGTGTCTGATCCAaagGTGGTTGAAGAGCTGTGGAAGTGGAGACAAACAGTGAAGGAGAAGAACTGATTgattttacttagttaaattattttctctCGTTTAATTTTTATAAACCCTTCTGAGTTTGTTGAATCCGTGCCATTCCTATAAAAGTGACTTTCTTCAGACTGTGCTCTGATGTATACATTCAGAATAACtgtttccacttttttttttttttttttcttttctcttcttctcctgcTTATGTTCAGCCAGTAGCAGGGTTGTCGGAAGATATGACTCTGTGCTTTGGGTCATACACCATagtatacttttttctttcttttcttttttccacttattttttttaaaccttttgttCCAGAAGGGTACTGTATGCGAATTCTGGCCTGTCCCAGCATAAGCAGAGAATTGGTCCTGTTCTCTGTGTGCACATGTTCTAATTAAAAGTGCAGCTAAATTAAGTGGTTTCTGAATGTTTCAGGGTTGTGTGCATCTTCAGGTCTGATGCAATCTACGCATGGCCACACTTGCAAagaaactgtaaaataattagAGTATATACGGTGGCTTATTGCTGGTTTTGACTTCAATTGTGGAGAAGCAGTTCTGTCCATGTCTCTACATACTGAAGAGTAGGAACCTGTTCTGTACTTTTGCAATGaagttaattacagttttactgtacaacaaataaacatttttggaaaaaaaaaa
>XM_022681055.1
TCTGAAGTCAGAAACATGAATGTTTCATCAAGTGCAGGCTGTGAGCTGAAACAGGGAAAAGAAGTCACCTTCAACCCGGAAGATGACGACTTTGAGCATCAGTTATCCATCCGCATGGTCTGTGTTGACCCAGCAACCAAAGATGAGCTGAACATCGTGGAGGTTGAAGGACAGGACTCTGAGGGTCAGAAGGTCAAAGCTGTGCTGGCCACGCTCAAGCCGTCCACTCTGCCCAGCGTCTGTTTAGGGGGCTTTGAGATCGCTCCTCCTGTTGTTTTCAGGCTGCGGTCTGGTGCCGGTCCAATCCACATCAGCGGGCAGCACCTCGTCAtaacagGAGGTGATCAGTCTtttgatgaagaggaggaggaagatgaggaagagCTGAGGATGGCTTTGAAGAGGGCAGGTCCAGCAAATGCAAAATCCTCAaaaaagatgaagatggatgaagaGGAGGACGATGATGACGAGGACGACGATGATGACGATATggaggatgatgatgacgaggaggatgatgaggaagaggaggaagagacaCCTGTGAAAGTACAGCCAAAGAAGCCCGCAGCTAAACCCCAGACTCCCGCACAGAACGGCAAAGGACCCAAGCCCAACACGCCAGCTGCCAAAAAGGACCAAAAGACACCTGATACTGGAAAGAAGAATAACAACAAACCACAGACACCCAAAACCCCGAAAACTCCACAAGCTCCTCTGTCCATCCCAGAGATCAAAGCCAAAATTTTGGCCTCTGTTgagaagGGAGTGTCTCTGCCGAAACTCCAACCCAAGTTTGAGAACCTTGTGAAGAACGGTTACAAAGTGTCTGATCCAaagGTGGTTGAAGAGCTGTGGAAGTGGAGACAAACAGTGAAGGAGAAGAACTGATTgattttacttagttaaattattttctctCGTTTAATTTTTATAAACCCTTCTGAGTTTGTTGAATCCGTGCCATTCCTATAAAAGTGACTTTCTTCAGACTGTGCTCTGATGTATACATTCAGAATAACtgtttccacttttttttttttttttttcttttctcttcttctcctgcTTATGTTCAGCCAGTAGCAGGGTTGTCGGAAGATATGACTCTGTGCTTTGGGTCATACACCATagtatacttttttctttcttttcttttttccacttattttttttaaaccttttgttCCAGAAGGGTACTGTATGCGAATTCTGGCCTGTCCCAGCATAAGCAGAGAATTGGTCCTGTTCTCTGTGTGCACATGTTCTAATTAAAAGTGCAGCTAAATTAAGTGGTTTCTGAATGTTTCAGGGTTGTGTGCATCTTCAGGTCTGATGCAATCTACGCATGGCCACACTTGCAAagaaactgtaaaataattagAGTATATACGGTGGCTTATTGCTGGTTTTGACTTCAATTGTGGAGAAGCAGTTCTGTCCATGTCTCTACATACTGAAGAGTAGGAACCTGTTCTGTACTTTTGCAATGaagttaattacagttttactgtacaacaaataaacatttttggaaaaaaaaaa

Function

NR:

description
PREDICTED: nucleophosmin-like isoform X4

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K11276 NPM1; nucleophosmin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681054.1 True 1617 mRNA 0.45 11 11324888 11334033
XM_022681055.1 False 1548 mRNA 0.44 11 11325247 11334033

Neighbor

gene id symbol gene type direction distance location
LOC103024145 kcnip1b,LOC103024145,LOC108444575,LOC107720696,LOC107552061,LOC102788752,LOC103363037,LOC107742366,LOC107676032,LOC107586147 coding upstream 2553 11250375 ~ 11322335 (+)
LOC103030157 NA coding upstream 166700 11154950 ~ 11158188 (+)
LOC103029829 NA coding upstream 199144 11113815 ~ 11125744 (+)
LOC103022370 LOC103022370 coding upstream 240241 11081892 ~ 11084647 (+)
LOC103029503 NA coding upstream 305456 10925074 ~ 11019432 (+)
LOC103027020 nlgn2b,LOC108443341,LOC107678031,LOC107554306,LOC107720555,LOC101475673,LOC102787387 coding downstream 416180 11750213 ~ 11865916 (+)
LOC111195033 NA coding downstream 601627 11935660 ~ 11939097 (+)
LOC107197312 NA coding downstream 654136 11988169 ~ 11993224 (+)
LOC111195107 NA coding downstream 756595 12090628 ~ 12095289 (+)
cnih2 cnih2,LOC100706298 coding downstream 810018 12144051 ~ 12151050 (+)
G174964 NA non-coding upstream 59766 11190481 ~ 11265122 (+)
G174944 NA non-coding upstream 186931 11137549 ~ 11137957 (+)
LOC103022678 NA non-coding upstream 228988 11093717 ~ 11095900 (+)
G174930 NA non-coding upstream 236049 11087719 ~ 11088839 (+)
G174813 NA non-coding upstream 648887 10675716 ~ 10676001 (+)
G174983 NA non-coding downstream 67360 11401393 ~ 11401613 (+)
G174986 NA non-coding downstream 76064 11410097 ~ 11416593 (+)
G174997 NA non-coding downstream 105108 11439141 ~ 11439725 (+)
G174998 cldn7,LOC108444573,LOC107552057,LOC107586151,LOC107676017 non-coding downstream 108319 11442352 ~ 11460006 (+)
G175004 NA non-coding downstream 162915 11496948 ~ 11503865 (+)
G174874 LOC108437803 other upstream 305470 10832168 ~ 11019418 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 693123 10621028 ~ 10631765 (+)
rexo2 NA other upstream 2171755 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 2772278 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 3158226 8149119 ~ 8166662 (+)
G174994 NA other downstream 95838 11429871 ~ 11436530 (+)
G175108 NA other downstream 574839 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 857323 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 1190108 12524141 ~ 12540201 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 1405470 12739503 ~ 12745053 (+)

Expression


Co-expression Network