LOC111195033


Basic Information

Item Value
gene id LOC111195033
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 11935660 ~ 11939097 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681061.1
agtgtagtttgaagatttttagtgactgattaataaacagagtagcctacctattgactaatgccgtcaggTAACAGTTCTCGGTGTAACACCTGTTTaacttaacctcttaacacgccccgGCCCGCCGGagggccagaaaaatatcataattaatatctggctgtgtttatgaataattataggctCAATATATCAGTGACAGTCAGCTGACACTCAGGATTACGGAGCTGCAAAGCGTTTTACTGTCggatgtacggttcctgaataAGAGTGCGTTAGACGGTTCGGTCTGTGAACACGCTCTTTGATCCGCCTGGGGTTACTACAGGAcacctttaaggctggcttgtgtaaatgacgtgtccactgcttaaaatagacatgcatcatTTCGTACAGTTAGCAGACTGCCAGGAAAAAAGCAGTTCATTTAGTGGGGATACTGTAGAGTTTCCCATTCCCAATTAGGGCAAGGAAAGGTTGACACCTGCTGGTAAACATTAGAATTGGTGGTGGTTGTGAGTGGTTTCAGAATGCCACCACCACTGTTTTGCTTGACATAGATGACTGTTTTAATATGCGTACATTATTAGATAATAATGTAATTGTTTCTTGTAATTTTTCATGCAGTCATATCATTATGGAATACACTGGATActagataaaataaatataataaaatataaaatataatataaaaataatatatatataaaatataaaatataaatatagtaaatagaTAAAATGATATTGCGTCTTACAGTTCAACAGAAAACCTACACTGATGTGTATTTTATGCACTTGTTTAGTatgataaaattataattttccaATTCAAAATATTTTCACAGGATCAATTCTTAAATATGTGCAAGGAGTACCTGCAATTCAGGATGAGCAAGCGCAAGAAGCAGAAGATTCTAGTtcaggtacacacacatacacgacCTCAGAATGTAGTAGGCCTACTACATCCACATGTGAACGCCTTCCGCCTTTAAATGATGATGGTGAAGTAAATGTGCCATCTCCAAATGATGATGGTGAAGTAAATGTGCCATCTTCAAAAGACCCTGCCCTTTGGCCTGTACACATCTCTGACAGTGACAGGGTTGAGCTTGTGAGGGGAGGACCATTAATGGTTCCTGACACATTCCAATTCCCAAGAGGCCCAGATGGAAGGGCATTTCATGCAGGCTTGCAATATAAATCACtaccaaataaagaaaaaatcaaGCGAAGCTGGATGGTCTACTCTGCACAGAGCAATGCAGTGTTCTGTTTCCCATGCAAGCTTTTTGGAACAAAGAGCACTAGGTTAACAAAAACAGGCTATAGCGACTGGTCGAACATTAACATCTGCTTGCGGAGCCATGAAGGCAGCCCAGACCATACAAAGTGTATGCTGCAATGGAGGGAACTAGATAGGAGACTGAGGAAGAATCTTGCTATAGACCAGCAGGAGCTGTCCTTAATGGAGGCAGAGAGGAAAAGATGGCACGATGTTCTTAAAAGGCTTTTTTCAATTACTTTGTCTCTAGCCACCAGAAATTTGCCATTTAGGGGCTCTTCGCAAAGTCTGTACGTACAAGACAATGGCAATTTTTTGAAGGAGGTGGAGCTGCTGGCTCAGTTTGATTCAGTTACAGAGGGACATGTGGCCAGAATTAAAGATGATGCATCCAGAACGCACTATCTGGGCCAACAAACGCAAAATGAAATCATTGAGATTATCTGCTCCCAGACCATTCAAACCATTGTGGCAAAAATCAAACAGGCAAAATATTATGCCATCATCCTTGATTGCACCCCAGACATCAGTCATAAGGAACAAATGTCTCTTGTTGTGCGCATTGTGGAATTGGTGCCTGAGCCACACATCAGAGAGTACTTCCTTGGATACATGAACGTGGTTGAAACGACAGGCCTGAATCTGTCAAATGTTGTTCTGGAAAAGTTGAGGGCACTTGGTATTCCCTTTGAAGATTGCAGAGGACAGGCCTACGATAACGGTGCCAACATGAAAGGAAAGAGGCAAGGAGTGCAGGCCAGACTACTACAGCTAAATCCAAGGGCAGCCTTTGTCCCTTGTGCCGCACATACAATGAATCTGGTCATATCAGATGCAGCTAAGTCATCTACAGATGCAATTAGCTATTTTGGATACCTTCAGaggctgttttgttttttctcagcAGCCACACAGCGGTGGGACATCTTACTCAAACATGTCAAGTTGACCCTGAAATCATGGTCTGATGTAAGATGGGAGAGCAGACTTCAAAGTGTTGTTGCTGTCCGAAGTCAAGTGAAAGAAGTGAGAGAAGCTCTCTTAGAAGCAAGACAAGCAGTTACCGAACCCGTTGCAAGGTCAGAGGCTCAAGGCTTGGCAGAAGAGGTTGGCTCATTCAGATTTCTGATCTGCACTGTTGTTTGGGCTGAAGTTCTTTCCGTCACCAGTCAGGTGAACAAGGTGCTGCAGTCATCCTCAATGCAGCTTGACATTGCTGCCAGGCTAATCAAGACTGCAAAGGAATCTCTTACAAAGTACAGGCAGTCTGGGTTTTCTGAGGCCATAGAATCTGCAAAGGAGCTGTGTGAGGCTCTTAACATCGAACCTGAGCTCAAACAGAAGAGGTTGAGAAGCACTAAAAGGCAGTTTGGTTATGAAGCACCTGATGAGCCCTTCAGTGATGCACAAAAGAGACTAGAGGTGGAATTTTTCAACCATGTTGTTGACTCTGCTCTGACATCGCTGCAGGAGCGGTTCGAGACCATGAGCCAAGTGAGGGACACATTTGGAGTGCTGCTTGATTTTCAGAAAGTACATGGTATTTCAAAGCAGGACCTGCACAATCACTGTATGGATGTGGAGAAAAAACTCACAGATAAAGGTGAAGCTGATATTGATGGACAGGAGATGATGCAGGAGATAATCAATCTCCCTCAGCTGTCACCACAGACAACTGCCTTTGAGTTGCTCACCTATCTGCATGATAATAGCCTGCAAGAAGTGTACCCAAATCTGTGGATTGCTCTCAGAATCGCCTTGACTCTTCCGGTCACAGTTGCCTCTGCCGAGCGTAGTTTCTCAAAACTGAAACTCATCAAAACATATCTGAGGTCAACAATGGGACAGGAGCGTTTAAGTGGCCTTGCCGTCATCAGCATCAATGCTGAAGTAGCACATAGTCTGTCTTTGGATGACCTGATCAGTGATTTTGCTGCCAGGAAAGCTCGCCGTGCACTTTTGTAAAGCCTTCTTCTTTGTTCATGCTTGTTTGGAACTTGTTgttcattgtatttattttattatcatgaagctgtctttatttatttgcataattatTTGTTCATAGCTCATTTTGTTTGGAATCgacagcatttttatttaagtaatttctaATGCTGGTGTTAAgaaagttatttatt

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681061.1 True 3438 mRNA 0.42 1 11935660 11939097

Neighbor

gene id symbol gene type direction distance location
LOC103027020 nlgn2b,LOC108443341,LOC107678031,LOC107554306,LOC107720555,LOC101475673,LOC102787387 coding upstream 69744 11750213 ~ 11865916 (+)
LOC103023833 LOC107678029 coding upstream 601627 11324888 ~ 11334033 (+)
LOC103024145 kcnip1b,LOC103024145,LOC108444575,LOC107720696,LOC107552061,LOC102788752,LOC103363037,LOC107742366,LOC107676032,LOC107586147 coding upstream 613325 11250375 ~ 11322335 (+)
LOC103030157 NA coding upstream 777472 11154950 ~ 11158188 (+)
LOC103029829 NA coding upstream 809916 11113815 ~ 11125744 (+)
LOC107197312 NA coding downstream 49072 11988169 ~ 11993224 (+)
LOC111195107 NA coding downstream 151531 12090628 ~ 12095289 (+)
cnih2 cnih2,LOC100706298 coding downstream 204954 12144051 ~ 12151050 (+)
LOC111195108 NA coding downstream 375635 12314732 ~ 12316734 (+)
ptrh2 ptrh2,LOC107744620,LOC107548881,LOC107699263,LOC107693958,LOC107747021,LOC107576753 coding downstream 734781 12673878 ~ 12692133 (+)
G175085 NA non-coding upstream 34113 11890741 ~ 11901547 (+)
G175083 NA non-coding upstream 203647 11668901 ~ 11732013 (+)
G175073 NA non-coding upstream 291212 11644141 ~ 11644448 (+)
G175068 NA non-coding upstream 297169 11638254 ~ 11638491 (+)
G175065 NA non-coding upstream 336427 11599021 ~ 11599233 (+)
G175157 NA non-coding downstream 6300 11945397 ~ 11945895 (+)
G175160 NA non-coding downstream 9711 11948808 ~ 11949769 (+)
G175169 NA non-coding downstream 44166 11983263 ~ 12037811 (+)
G175201 NA non-coding downstream 126181 12065278 ~ 12069322 (+)
LOC111195036 NA non-coding downstream 248146 12187243 ~ 12189381 (+)
G175108 NA other upstream 22204 11908872 ~ 11913456 (+)
G174994 NA other upstream 499130 11429871 ~ 11436530 (+)
G174874 LOC108437803 other upstream 916242 10832168 ~ 11019418 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 1303895 10621028 ~ 10631765 (+)
rexo2 NA other upstream 2782527 9126708 ~ 9153133 (+)
LOC103027177 tmem261,LOC103027177 other downstream 252259 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 585044 12524141 ~ 12540201 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 800406 12739503 ~ 12745053 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 1354201 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 1414671 13353768 ~ 13418416 (+)

Expression


Co-expression Network