cxadr (cxadr)


Basic Information

Item Value
gene id cxadr
gene name cxadr
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 11957424 ~ 11987914 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681062.1
GAGCACGTGATCGGATTCCTGCCAGAATCCACCTGCCCAGCTCTGTGTTCGATGCTCCTGGAAGCGTGAGGATAACCCGACCGTCTAAACTGgaaaagttgattttttttgccgCTTTTCGGGAAAAACATATCGAAATGGTTCATATCAAACTGGATCATGTATTTTACCTGTGCACGTTTTTCTCCGCAGCATATGGGCTGGAAATCACCTCCACTGGAACCACCTCTATAGAGAAGGCGAGTGGTGAGAGCGTGAAGCTGGACTGTCAGTTCACTCTGGCTTCGGAGGACTCGGGCCCACTGGACATCGAATGGAGCCTCCAACCCTCCGACAACCAGAAAGAGGAGATAGTGGTAATTCTATACTCAGGTGATCGAGCATACGAGCATTATTACCCTCCTCTGAATGGTCGAGTGCACTTTAACTCTGCTGACCCAAAGTCAGGCGATGCCTCCATTAATTTACTGCGGGTTGAAGCGAAGGATACAGGGACGTATCAGTGCAAAGTGAAGAAGGCACCAGGTATCAGGAGTCGCAAGATCCTGCTGACTGTcatggTACGCCCCTCTAAGCCCAGGTGTTCTATAGAAGGGTCTGCTCAGGTTGGCAGTGAGGTAATGCTGAAGTGTAAATCCACTGATGGGACGAGTCCTTTGCAGTACATCTGGGAGAAAACCAATGGCAACAAATTGCTGCCAGCAAGTGCTGTACTAGatcctGTTGGAGGAACCATCAGCATCCGTAATGCAACTGAAGCTGTGTCAGGAATGTACCGCTGTACTGCCAAGAACCGCGTTGGAACTGACGAATGTGTTCTAGAGGTCAACATCACACCTTCCCCTAACACTGCAGGTGTGATTGCCGGCTCTGTGATCTGTGTGTTGTTGATTCTACTCCTCATCGCGCTCCTTCTGTTTTGCTGCTGCCGTGCTCAACACAGGAAAAAGTATGAGAAGGAAATTTCGTATGAGATCAGGGAGGACGTCCCCCCCCCTAAGAGCCGGGTCTCAACAGCTCGGAGCTTCACCAGTGTGGGCAGCCAGCGGTCTTCTCTGGGCTCCATGTCCCCCTCCAATCTTCACGAGTACTCCAAACCCCAGTATGACAAAATCCCTGCCGATGAGTATGAGAGGCCCCCCAGCCACGCCCCCCTCCCCCTTAGCCATGCCCCCAGTAGAATGGCTGCTTCCAACCTGAGTCGCATGGGAGCTGTTCCGGTCATGATCCCAGCACAGAACCGGGACGGGTCCATTGTGTAGAGCTGGGGGAGGGGCGTGTTAACAAGGAGGGGTTACTGTTCCAGCCAGACAAAGGGTCCCTGACTGAAGCCTCTCCATAAAACACATGATGCCACTGATGAGCAAAAAGATGATCTTAAAGTTATAAAATGAAGAAGAACAAACTGGGATCTCACTTGTAAATAGTAAATAGCTGAtttctgtttctattttggtggtTCTGTTTATTAAGATTTCTTGCAGATTAAAGGTTCTCTGTATCTGTGAGATATTTCAGTTTCGAACCtacagctgattttttttttaaaaccaattgattgagtgtaacccttcctgAATGTTGAAATCCACACACACGTGGTTTTCTATAGACCTGTGGATTTACCTGTTATGTGTTCAAACACTCCAATCTAGAGCTGTTTGGTCCAATTGGTGTAGTTGGTGAAGCAGTCAAATTTGCTGATTTTGGACTGTTCAGTTAAACACTTAAAACCCTGCTCCCTGCTTTAGAAAAGGAAGGACCTTTAAATGAAGattatttagaaattatcagGTGTTCATTTGTCTAATCTTTTTAGTCTGGAACAGTTCCTGTTCTACCTTAATGCCTACAGGAGAACCTTACCATTCCCACAGTCGGCCATGTTGGTGGACATGAAGGCACTTTCCTGACAAATTGCTggtgcctttttttattttgttggctAAAATGAAATCTCAAATATCTCAAATAAATCCTCAACCAGTGACTCTGCTGCAGTATGGCTGGTTTTCTGATCAGTTTTTATTGTCTAAAATCGTCTGGATAACTGTATAAAGCAATGCGGGACACTTTCAATGTTCACTAATGATGATATTAACTAATTTTGAACTAATATTAACAAATTACTATTttctatgcttttttttttttttttttttagcagttccTGTAAGAACTTAAGCTTTGCTCCTTTTATGTGCATTGTGgtgaactttttaaataaacaaaaaatcacTTCTCAACCCCCA

Function

symbol description
cxadr Enables virus receptor activity. Acts upstream of or within kidney development. Located in bicellular tight junction and cell surface. Is expressed in several structures, including digestive system; epithelium; heart; nervous system; and pronephros. Orthologous to human CXADR (CXADR Ig-like cell adhesion molecule).

NR:

description
coxsackievirus and adenovirus receptor homolog

GO:

id name namespace
GO:0001822 kidney development biological_process
GO:0007155 cell adhesion biological_process
GO:0005912 adherens junction cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06788 CXADR, CAR; coxsackievirus and adenovirus receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681062.1 True 2252 mRNA 0.45 7 11957424 11987914

Neighbor

gene id symbol gene type direction distance location
LOC103036348 NA coding downstream 80242 11875826 ~ 11877182 (-)
LOC103026543 fgf11b,LOC103026543,LOC108443340,LOC107677987,LOC107586150,LOC107720691,LOC107676016 coding downstream 365258 11508142 ~ 11592166 (-)
LOC103025611 LOC108410401,LOC108277330 coding downstream 520970 11408683 ~ 11436454 (-)
LOC103024668 tlx3b,LOC108444569,LOC105024610,LOC106603212,LOC106563176 coding downstream 609847 11338418 ~ 11347577 (-)
LOC103023510 NA coding downstream 753708 11185608 ~ 11203716 (-)
LOC103046645 ehd1b,LOC108414013,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding upstream 20667 12008581 ~ 12080631 (-)
wdr74 wdr74 coding upstream 132072 12119986 ~ 12138789 (-)
ints2 ints2,LOC107744627,LOC107699256,LOC107747027 coding upstream 268947 12256861 ~ 12306683 (-)
med13 med13,LOC107744626,LOC107699258,LOC107693951,LOC107747042,LOC107548827 coding upstream 349298 12337212 ~ 12468682 (-)
LOC103039067 cltc coding upstream 704951 12692865 ~ 12753715 (-)
G175417 NA non-coding downstream 642 11955441 ~ 11956782 (-)
G175423 NA non-coding downstream 7722 11948361 ~ 11949702 (-)
G175422 NA non-coding downstream 10256 11946825 ~ 11947168 (-)
LOC103026826 NA non-coding downstream 89349 11854081 ~ 11868075 (-)
G175118 nlgn2b,LOC108443341,LOC107678031,LOC107554306,LOC107675989,LOC101475673 non-coding downstream 206542 11748676 ~ 11750882 (-)
LOC111195034 NA non-coding upstream 88197 12076111 ~ 12077692 (-)
LOC111195035 NA non-coding upstream 128754 12116668 ~ 12118843 (-)
G175526 NA non-coding upstream 359593 12347507 ~ 12349912 (-)
G175529 NA non-coding upstream 407536 12395450 ~ 12402338 (-)
G175530 NA non-coding upstream 434229 12422143 ~ 12427144 (-)
G175119 NA other downstream 25670 11827807 ~ 11931754 (-)
G175072 NA other downstream 313792 11643317 ~ 11643632 (-)
LOC103024982 cldn7,LOC108444573,LOC107552057,LOC107586151,LOC107676017,LOC107678043,LOC107720692 other downstream 497394 11442311 ~ 11460030 (-)
LOC103030477 NA other downstream 553723 11397549 ~ 11403701 (-)
LOC103034963 fgf18,LOC103034963,LOC108437818,LOC108276546,LOC107588396,LOC107747128,LOC107660900 other downstream 1285943 10661604 ~ 10671481 (-)
G175583 NA other upstream 635297 12623211 ~ 12623555 (-)
G175647 NA other upstream 909126 12897040 ~ 12898630 (-)
G175707 NA other upstream 1001023 12988937 ~ 12996934 (-)
LOC111195039 NA other upstream 1015473 13003387 ~ 13007061 (-)
LOC103044870 NA other upstream 1264243 13252157 ~ 13254568 (-)

Expression


Co-expression Network