ptrh2 (ptrh2,LOC107744620,LOC107548881,LOC107699263,LOC107693958,LOC107747021,LOC107576753)


Basic Information

Item Value
gene id ptrh2
gene name ptrh2,LOC107744620,LOC107548881,LOC107699263,LOC107693958,LOC107747021,LOC107576753
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12673878 ~ 12692133 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681073.1
ggacgcagccagagagagagagagagagagagaaagaaagagagagagagagagactgcgcGCGGTGAGCGGATTCACTAAAGAACAGGCATCAGGATGGACTCTTACAGCCCATTGGCCTTGGGCATACTAGCTGGGGTTGGTTGTGGACTCTGCCTTGGATGGTACCTTCGAGGCCGGATCAGCAGACCCGCTCGTGACCTGATGGCAGCTTGTGGAAATGCCAGTGAAAACTGCATCATGGGTGAAAATGGAGAATTCAAAATGATCTTAGTCGTCCGAACTGACCTAAAAATGGGCAAAGGCAAAGTGGCTGCTCAGTGCTCTCACGCTGCAGTGTCCGCATACAAGCAGGTCCAGCGCCGAAACCCTGACCTTCTGAAGCAGTGGGAATACTGTGGTCAGCCCAAAGTAGTCGTCAAGGCTCCGGATGAAGAGTGCCTTTTAGAACTATTGACCCACGCTAAAGAGGTTGGGCTGCCCGTCAGCCTTATTCAAGATGCTGGAAGGACCCAAATTGCTCCAGGTTCAAGGACAGTTCTTGGCGTTGGACCAGGACCTGCAGATCTTGTGGACAAAGTAACAGGACACTTGAAACTATTCTAGACACCTAATTGATAAGAGATGTGATATGCAAGATTGTTCTAGTTCAAGTTCTATTGTGTTTTTAGATCAAatgcaatatatattaaaacggCATTGTAACACaaga

Function

symbol description
ptrh2 Predicted to enable aminoacyl-tRNA hydrolase activity. Predicted to be involved in negative regulation of anoikis and positive regulation of anoikis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol and mitochondrion. Orthologous to human PTRH2 (peptidyl-tRNA hydrolase 2).

NR:

description
peptidyl-tRNA hydrolase 2, mitochondrial-like isoform X1

GO:

id name namespace
GO:0004045 aminoacyl-tRNA hydrolase activity molecular_function

KEGG:

id description
K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681073.1 True 712 mRNA 0.48 2 12673878 12692133

Neighbor

gene id symbol gene type direction distance location
LOC111195108 NA coding upstream 357144 12314732 ~ 12316734 (+)
cnih2 cnih2,LOC100706298 coding upstream 522828 12144051 ~ 12151050 (+)
LOC111195107 NA coding upstream 578589 12090628 ~ 12095289 (+)
LOC107197312 NA coding upstream 680654 11988169 ~ 11993224 (+)
LOC111195033 NA coding upstream 734781 11935660 ~ 11939097 (+)
LOC103039534 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 coding downstream 99090 12791223 ~ 12794193 (+)
katnal1 katnal1,LOC107741157,LOC107653760,LOC107578067,LOC107697436,LOC107743395 coding downstream 103983 12796116 ~ 12809169 (+)
ubl3 ubl3,LOC107741158 coding downstream 144597 12836730 ~ 12870232 (+)
LOC103046100 NA coding downstream 335988 13028121 ~ 13029690 (+)
LOC103041695 LOC108412888 coding downstream 346817 13038950 ~ 13040433 (+)
G175368 NA non-coding upstream 13595 12659470 ~ 12660283 (+)
LOC111195043 NA non-coding upstream 38085 12633680 ~ 12635793 (+)
G175351 NA non-coding upstream 77041 12596638 ~ 12596837 (+)
G175350 NA non-coding upstream 79250 12594224 ~ 12594628 (+)
G175348 NA non-coding upstream 81843 12585931 ~ 12592035 (+)
G175356 cltc non-coding downstream 11481 12703614 ~ 12708778 (+)
G175372 cltca non-coding downstream 18181 12710314 ~ 12711384 (+)
G175378 cltc,LOC107693955 non-coding downstream 39949 12732082 ~ 12738872 (+)
G175384 btg3 non-coding downstream 66100 12758233 ~ 12760229 (+)
G175388 NA non-coding downstream 178649 12870782 ~ 12872646 (+)
rnft1 rnft1 other upstream 133677 12524141 ~ 12540201 (+)
LOC103027177 tmem261,LOC103027177 other upstream 464429 12191356 ~ 12209449 (+)
G175108 NA other upstream 760422 11908872 ~ 11913456 (+)
G174994 NA other upstream 1237348 11429871 ~ 11436530 (+)
G174874 LOC108437803 other upstream 1654460 10832168 ~ 11019418 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 47370 12739503 ~ 12745053 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 601165 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 661635 13353768 ~ 13418416 (+)
G175900 NA other downstream 987226 13679359 ~ 13685563 (+)
LOC103038733 bcl7b other downstream 1106506 13798639 ~ 13889044 (+)

Expression


Co-expression Network