LOC103046796 (atp8b5b,LOC108427255,LOC108277118,LOC107713374,LOC107686462,LOC107744118)


Basic Information

Item Value
gene id LOC103046796
gene name atp8b5b,LOC108427255,LOC108277118,LOC107713374,LOC107686462,LOC107744118
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 15943630 ~ 15985372 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681119.1
CCTGCTCCATTTCCTTCCAGCCTCAGGTGTGTCCACACTCCACCGCTTCACTTCCTCCCAACCGTCCTCCTAAACACCTGACCTGATCTGAAGACCAGACTACAGTCCCGAAGACCACAGACCTGAGGACCAGACCATAGTCCTGAAGACCAGACCATAGTTCAGACCACTTACCTAAGGACCAGGCCACAGTTTTGATCTGAAGACCAAAATATAGTCCTGAAGACTAGACTCCATTCCAGAGACCTGAGGACCAGACCACAGTCCTGTTCAGAAGATCTGACAAGACCACAGATCTGAAGACTAGACTACAGTCCAGAGACCTGAGGACCAGAGCCAGACCTGAACTAAAGGCCAGACCACAGACCTGAGGACGTGACCATAGTCCTGATCTGAAGACTAGACCAGTCCTGAAGACCATACTGCAGTCTAGAGGCTTGAGGATCAGACCACAGTTTTGATCTCAAGACCCAGTCTAGACCTAAAGACCAGACCACAGTCCTGATCTCAAGACCCAGTCTAGACCTGAGGATTAGCCCACAGTCCTGATCTCAAGACCCAGTCTAGACCTAAAGACCAATCCACAGTCTTGATCTTAAGACCCAGTATAGATCTGAGGACCAAACCACAGTTCTGAAAACAAGACCCAGACCTGATCTCAAGACCCAGTCTAGACCTGAGGACCAGACCACAGTCCTGATCTCAAAACCCAGTCTAGACCTGAAGACCAGCCCACAGTCCTGATCTCAAGACCCAGTCTAGACCTGAGGACCAAACCACAGTCCTGATCTCAAGACCCAGTCTAGACCTGAGGACCAAACCACAGTCCTGATCTCAAGACCCAGTCCTGAATTAAAGACCAGACCACAGTCTAGATCTGAAGACCAGAACACAGACCTAAAAAACAAGACCACAGACCTGAAGACCAGAGCTCAGTCTTGACCTCTTCCTTGGTTTTGACACCTGCCTTAAACAAACTACAGTGCAGAAAACAGTGCTGTACTGTTGGATTGTGGGAATTGTAGTCCTGCTGTATTGGTGTGTGATATCAAAGTTTAGTCTGGGACTTTGGAACTACTTCTCCAGGAACTGGATGGAGCGTTTCTGACTCAGAATTCTGATGGATGTTTAGAGTGAAAGATGGGCTCCGTGCTGTCAGCGTGTGGACTGAACTTTAAGAAGGAGAAAGTACAGGGAGAGAGGCACTTACGAGCCAACGATCGAGAATTCAATCTCTCCTTTAAATATGCTAATAATGCCATCAAAACCTCCAAATACAACATCTTCACCTTCCTGCCCCTCAACCTGTTCGAGCAGTTCCAGAGACTCGCCAACGCCTACTTCGTCTTCCTGCTCATCCTGCAGttGATTCCAGCTATCTCCTCTCTGTCCTGGTTCACCACGGTGGTTCCTCTGCTGCTGGTGTTGTGCATCACTCTGGTTAAAGATGGATCTGATGATATTaacCGTCACAAGAATGACCGGCAGGTGAATAACCGTAAGGTGGACGTCCTGATAGACGGACAACTGaagaatgagaaatggatgaatgTACAAGTGGGAGACATCATCAAACTGGAGAACAACCAGTTCGTCACGgctgatctgctgctgttgtccAGTAGTGAGCCTCTGAACCTGATCTATATCGAGACTGCTGAACTGGACGGtgaGACTAATCTGAAGGTAAAGCAGGCTCTGACAATTACTGGTGATTTGGGAGATAATATAGACAGACTGGCCGCCTTTaaaggtgaggtacgctgtgaagctccaaaTAATCGTCTGGATAAGTTTACCGGTACTCTGGCGGTGGAGGGTCAGACCTTCGCTCTGGATAATGAGCGTATTCTGCTGCGCGGCTGCACTCTGCGCAACACTGAGTGGTGCTTCGGCCTGGTGCTGTTCGGAGGTCCGGATACGAAGCTGATGCAGAACTCTGGGAAGTCCGTGTTTAAGCGTACGAGCATCGATCACCTGATGAACGTCCTGGTTCTGATTATTTTTGGGCTGCTGGCGTGCATGTGCACGATTCTGGCGATTGGGAACGGGATCTGGGAATATCAGCAGGGATCCTCTTTTACGGTGTTCCTCCCCCGGCAGGAGGGGGCAGACGCTGCCCTTTCCGGCTTCCTCACCTTCTGGTCCTACGTCATCATCCTCAACACGGTGGTGCCCATCTCTCTATACGTCAGTGTGGAGATCCTCCGGTTGGGGAACAGCTACTATATAGACTGGGACAGGAAGATGTACCACACTAAGAGTGATACTCCAGCCCAGGCTCGAACCACCACCCTAAACGAGGAGCTGGGCCAGATTAAATATATCTTCTCCGACAAGACCGGCACCCTGACCCAGAACATCATGACCTTCAACAGGTGCTCCATCAACGGCAAGTCATACGgtgAAGTTGTGGATTTCACTGGACAAAGGATTGAGATTACTGAGAAGACAGAAAAGGTAGACTTCTCGTGGAACTCGCTGGCGGACCCCAAGTTCAGTTTTCATGATCATGCTCTGGTGGAGGCAGTGAAGCAGGGCTCCACGGAGGTTCATGCTTTCTTCAGGCTGCTGGCACTGTGCCACACTGTGATGCCAGAGGAGAAGACTGTGGGTAACCTGTACTATCAGGCCCAGTCTCCTGATGAGGGCGCTCTGGTGACGGCGGCTCGTAATTTCGGATTCGTGTTTCGTTCCCGAACTCCTGAGACCATTTCTGTAGTGGAGATGGGGACCAACACCACGTACGAGCTGCTGGCAGTGCTGGACTTCAACAACGTCCGCAAGAGGATGTCTGTAATTGTCAGGAGTCAAGAAGGCAGGCTGACTCTGTACTGTAAAGGTGCAGATACCATCATCTACGAGAGGCTCCACCCCTCCTGCTCCAAACTTATGGAAGTCACCACTGAGCACCTCAATgagtATGCTGGTGAAGGTTTGCGGACTCTAGCTCTGGCCTATAAGGACTTGGATGAAGCCGAGTTTCAGGCGTGGAGAGAGCGCCACCATGAGGCCAGCACTGCTCTGGAGGAGCGGGAGGAAAAACTGGACGCCATCTATGAAGAAATCGAGACTGATCTTCTGCTTTTAGGGGCGACCGCGGTGGAGGATAAGCTGCAGGATGGCGTTCCTCAGACCATCGAGCAGCTCTCCAAAGCGGACATCAAGATCTGGGTCCTGACTGGAGATAAGCAGGAGACGGCGGAGAACATCGGATATTCCTGTAACATGCTGAGGGAGGAGATGACGGAGGTGTTCGTCGTAGCGGCTGATACAGCAGAGGGCGTGAGGGAGGAGCTAGTGAACGCCAGAAAAAAGATGTGTCCTGGCTCTCCAGACGAGGCTCCCTTCCAGAAGAGCAGGTTCGGGAGTAAAAAGCCCAAGCTGGTGCTGGATGAGAAGGCAGATGGAGAGTTCGGCCTGGTGATAAATGGACACAGCCTGTCGTATGGTCTTCAGAAGGATCTTCAGCTGGAGCTGTTGAGGACGGCCTGTATGTGTCAGACGGTGATATGCTGCAGGGTCACGCCCCTTCAGAAAGCTCAGGTGGTGGAACTGGTGAAGAAGTATAAGAAAGCCGTCACCCTCGCCATCGGAGACGGAGCCAATGATGTCAGCATGATCAAAGcTGCCCATATTGGAGTGGGTATCAGTGGTCAGGAGGGCATGCAGGCTGTTCTGTCCAGCGATTACTCCTTCGCTCAGTTCCGGTACCTACAGCGCCTCCTGCTGGTCCACGGGCGATGGTCTTATCTGCGCATGTGCAAGTTCCTGCGATACTTCTTCTATAAAAACTTCAGCTTTACGTTTATCCACTTCTGGTACGGCTTCTTCTGCGGCTTTTCTGCTCAGACGGTGTATGATGAATGGTTTATCACGATGTATAACCTGGTGTACACGGCGCTGCCCGTCATCGGCCTCAGTCTCTTCGATCAGGATGTAAATGACCGCTGGAGTTTCCAGTACCCCCAGCTGTACTCCCCGGGTCAGCAGAACCAGTACTTCAGTATAAAGGCCTTTGGGAAGATCCTCCTGCACAGCTGCTACAGCTCCCtcatcctcttcttcatccCGTACGCCGCCATGCACGACACGGTGCGCGACGACGGGAAAGACATCGCCGATTACCAGTCCTTCGCCCTGCTCGCCCAGACCTGCCTGCTGATGGTCGTTAACCTGCAGCTGGGACTGGACACGTACTACTGGACAGCAGTCAATCATTTTTTCCTGTGGGgaagtctgtctgtctattttgCAGTTTCCTTCACCCTCTACAGCAACGGCATGTTCCTCATCTTCACCTCCTCCTTCCCCTTCATCGgaaCTGCGAGGAACTCTCTGAACCAGCCCAACGTCTGGCTGACCATCTTCCTGACCACCATCCTGTGTGTTCTGCCTGTAGTTGCCCTCAGATTTCTGCTCATCCAGCTCCGGCCCACCATTAACGACAagGTTCGCTACAAAGTGAGACAAGCCAAAGCCGTGCTCCCTCCTCCTGTTCGCCGTTTCCCACGGCGACGCATCAGCACCCGTCGCTCTGGCTACGCCTTCTCTCACGCCCGCGGTTACGGCGACTTGGTAACTTCAGGACGTTTCCTGCGGAGGCCAGTAAAGAGCAGACCAGCGCTGTTCCCGTTAGCGGAGTCGCCTATAGCCGAAAATTCACCGCAGACCTACCGCAACATCGGAGAGGGGATGCCGAGCTCCTAGCAGCCCTGCCACCAGGGGGCGCTCTCAGGAACATTTACTGAACTGTACTTCTACGCCTACGTCTGTGAGCTCACGTCGTTTTACATCACATATAAGATTAGTGTGTTCACTATTTCACGAGGCTGTGTCACATCTACCAAACCTGAATGTATAGAAAATGATGATGAAACATAGAAATTGCAGAATTAAAAAATGGAGACAAAACTGTAAGTAACtaaattcttatatattttgGCCCCAAATGATAGAAAGCACTGCTTTGCAgaagcaaaaaaagagagatatacTGTGAAAAGcatatatggtaaaaaaaa

Function

symbol description
atp8b5b Predicted to enable ATP binding activity; ATPase-coupled intramembrane lipid transporter activity; and magnesium ion binding activity. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATP8B5P (ATPase phospholipid transporting 8B5, pseudogene).

NR:

description
PREDICTED: phospholipid-transporting ATPase ID-like

GO: NA

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681119.1 True 5024 mRNA 0.51 28 15943630 15985372

Neighbor

gene id symbol gene type direction distance location
LOC111195055 NA coding upstream 63009 15872252 ~ 15880621 (+)
LOC103024827 NA coding upstream 442315 15497479 ~ 15501315 (+)
LOC103024204 NA coding upstream 456419 15482059 ~ 15487211 (+)
trnal-uag_3 NA coding upstream 1016221 14927328 ~ 14927409 (+)
LOC103022111 LOC103022111 coding upstream 1021774 14918859 ~ 14921856 (+)
rusc2 NA coding downstream 6941 15992313 ~ 16008456 (+)
LOC103044056 NA coding downstream 36789 16022161 ~ 16035564 (+)
sppl3 sppl3 coding downstream 371811 16357183 ~ 16404802 (+)
LOC103042004 kcnn2,LOC108435393,LOC108276576,LOC106564970,LOC100135971,LOC106563202 coding downstream 580377 16565749 ~ 16654846 (+)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524 coding downstream 692124 16677496 ~ 16685482 (+)
G176549 NA non-coding upstream 69198 15873036 ~ 15874432 (+)
G176522 stoml2,LOC107686459,LOC107688641,LOC107744156,LOC107569390 non-coding upstream 152970 15784590 ~ 15790660 (+)
G176520 NA non-coding upstream 160243 15780450 ~ 15783387 (+)
G176511 NA non-coding upstream 186618 15755654 ~ 15757012 (+)
G176510 NA non-coding upstream 188451 15754554 ~ 15755179 (+)
G176561 NA non-coding downstream 42024 16027396 ~ 16029377 (+)
G176579 ywhah,LOC108427260,LOC107744159,LOC107562560,LOC107713377,LOC107555530 non-coding downstream 145120 16130492 ~ 16133397 (+)
G176582 NA non-coding downstream 157158 16142530 ~ 16142972 (+)
G176602 NA non-coding downstream 201301 16186673 ~ 16187045 (+)
LOC111195056 NA non-coding downstream 287285 16272657 ~ 16278281 (+)
LOC103039555 LOC108415819 other upstream 1874268 13951405 ~ 14069362 (+)
LOC103038733 bcl7b other upstream 2054586 13798639 ~ 13889044 (+)
prdm15 LOC108413920,LOC106511912 other upstream 2074775 13847262 ~ 13868855 (+)
G175900 NA other upstream 2258067 13679359 ~ 13685563 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other upstream 2525214 13353768 ~ 13418416 (+)
fam136a fam136a,LOC102792467 other downstream 835563 16820935 ~ 16824328 (+)
G176882 inpp5j other downstream 1057463 17042835 ~ 17046989 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other downstream 2153340 18138712 ~ 18174518 (+)
G177219 NA other downstream 2238901 18224273 ~ 18226133 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other downstream 2339501 18324873 ~ 18330489 (+)

Expression


Co-expression Network