Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC103021760 |
| gene name | loxl2,loxl2a,LOC108440557,LOC107720722,LOC107678026,LOC107705082,LOC107687596,LOC107553706 |
| gene type | coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035916.1 |
| NCBI id | CM008319.1 |
| chromosome length | 36262418 |
| location | 18349905 ~ 18388403 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| loxl2a | Predicted to enable calcium ion binding activity; copper ion binding activity; and protein-lysine 6-oxidase activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in several cellular components, including basement membrane; chromatin; and endoplasmic reticulum. Predicted to be active in extracellular space. Is expressed in eye; intersegmental vessel; midbrain; midbrain hindbrain boundary; and notochord. Orthologous to human LOXL2 (lysyl oxidase like 2). |
| loxl2 | Enables metal ion binding activity; oligosaccharide binding activity; and protein-lysine 6-oxidase activity. Involved in several processes, including collagen fibril organization; peptidyl-lysine oxidation; and response to copper ion. Located in several cellular components, including chromatin; endoplasmic reticulum; and nucleoplasm. Colocalizes with collagen-containing extracellular matrix. |
| description |
|---|
| PREDICTED: lysyl oxidase homolog 2A-like |
| id | name | namespace |
|---|---|---|
| GO:0006898 | receptor-mediated endocytosis | biological_process |
| GO:0032332 | positive regulation of chondrocyte differentiation | biological_process |
| GO:0002040 | sprouting angiogenesis | biological_process |
| GO:0030199 | collagen fibril organization | biological_process |
| GO:0001837 | epithelial to mesenchymal transition | biological_process |
| GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0001935 | endothelial cell proliferation | biological_process |
| GO:0001666 | response to hypoxia | biological_process |
| GO:0043542 | endothelial cell migration | biological_process |
| GO:0005604 | basement membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005694 | chromosome | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005507 | copper ion binding | molecular_function |
| GO:0004720 | protein-lysine 6-oxidase activity | molecular_function |
| GO:0005044 | scavenger receptor activity | molecular_function |
| id | description |
|---|---|
| K00280 | LOXL2_3_4; lysyl oxidase-like protein 2/3/4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_022681166.1 | True | 3319 | mRNA | 0.52 | 14 | 18349905 | 18388403 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC103046908 | NA | coding | downstream | 32343 | 18307853 ~ 18317562 (-) |
| LOC103046193 | LOC103046193,LOC108440561,LOC107553709,LOC107720725,LOC107678020,LOC107705087,LOC107586120 | coding | downstream | 47863 | 18257392 ~ 18302042 (-) |
| LOC103045884 | NA | coding | downstream | 123728 | 18224236 ~ 18226177 (-) |
| pbdc1 | pbdc1,LOC107678025,LOC107687677,LOC107730415,LOC107705089 | coding | downstream | 168826 | 18175471 ~ 18181079 (-) |
| LOC103043435 | NA | coding | downstream | 214776 | 18103831 ~ 18135129 (-) |
| tacc1 | NA | coding | upstream | 16600 | 18405003 ~ 18449203 (-) |
| LOC103023096 | ddhd2,LOC108440555,LOC107678050,LOC107553701,LOC107720719 | coding | upstream | 70601 | 18459004 ~ 18482116 (-) |
| LOC103025514 | NA | coding | upstream | 177298 | 18565701 ~ 18570062 (-) |
| LOC103025819 | rassf2 | coding | upstream | 182826 | 18571229 ~ 18577765 (-) |
| LOC103026456 | kcnip3,kcnip3b,LOC107092684,LOC106535652,LOC103473704,LOC103026456,LOC108440143,LOC107678047,LOC107572711,LOC107720714 | coding | upstream | 191348 | 18579751 ~ 18595814 (-) |
| G177559 | NA | non-coding | downstream | 1251 | 18348298 ~ 18348654 (-) |
| G177555 | NA | non-coding | downstream | 11073 | 18338544 ~ 18338832 (-) |
| G177546 | NA | non-coding | downstream | 11439 | 18263803 ~ 18338466 (-) |
| G177551 | golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053 | non-coding | downstream | 21726 | 18324755 ~ 18328179 (-) |
| G177545 | NA | non-coding | downstream | 82398 | 18262603 ~ 18267507 (-) |
| G177584 | NA | non-coding | upstream | 146482 | 18534885 ~ 18537687 (-) |
| G177589 | NA | non-coding | upstream | 160607 | 18549010 ~ 18550867 (-) |
| G177596 | NA | non-coding | upstream | 172949 | 18561352 ~ 18565313 (-) |
| LOC111195060 | NA | non-coding | upstream | 231796 | 18620199 ~ 18624721 (-) |
| G177605 | NA | non-coding | upstream | 237886 | 18626289 ~ 18626532 (-) |
| G177526 | NA | other | downstream | 175380 | 18171849 ~ 18174525 (-) |
| stoml2 | stoml2,LOC107686459,LOC107688641,LOC107569390,LOC106563216 | other | downstream | 2559261 | 15780555 ~ 15790644 (-) |
| LOC111194989 | NA | other | downstream | 2784442 | 15528296 ~ 15565463 (-) |
| LOC103044788 | wnt11,wnt11r,LOC107686210,LOC107589704,LOC107747044 | other | downstream | 3679235 | 14657270 ~ 14670670 (-) |
| G176138 | NA | other | downstream | 4277221 | 14069749 ~ 14072684 (-) |
| G177568 | NA | other | upstream | 9179 | 18397582 ~ 18403008 (-) |
| nsd3 | whsc1l1,LOC107720716,LOC107687514,LOC107705078 | other | upstream | 97239 | 18485642 ~ 18531635 (-) |
| LOC111195059 | NA | other | upstream | 226489 | 18614892 ~ 18618612 (-) |
| LOC103029522 | LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 | other | upstream | 498625 | 18887028 ~ 18934600 (-) |
| G177704 | NA | other | upstream | 702743 | 19091146 ~ 19092146 (-) |
