LOC103030174


Basic Information

Item Value
gene id LOC103030174
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19038310 ~ 19048336 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681189.1
TTTGGTTTGTCTGTCCGTGACGTCACGGGCCACTACACGAAAAAGATGGTTCCTACTTTAGTTTAGAGTCTCACTCAAGCGCACTGATACTCACGCGCACTGATACTCGCGCGCACGCGCAGGAACAGGCACAGGCGCGCGCAGTGAGCGGGTGAGCGCGTGAGGGGTGAGATGGAGGAGTGATCGGGAGTGATCAGCGCTGCGGGATGGAGGCGCGCGAGGAGCCCGGCCGCAGGCTGGTGTGTATCCGGGGATCCGCgaggaggCGCTCCAAGTGCAGGAGGATGTACGATGAAGAGGAGGATTTATCAGACGTGGAAGACATTGCCAACATCAGAGGCTTTGATCTGGAGGATAAACTGTGCAGCGACCACTACAGCAGCAATTTCATACACTATATGGAGGGCAAAGATTTCACATACGAGTATGTTCAGAGAGAAGCCCTGCGAGTCCCCCTGGTGTTCAAATCCAAAGAGGGGCTGGGGATCAGAATGCCTGAGCCAGAGTTCACCGTCAGCGAAATTAAAGGACTCGTTGGAAGTCGGCGGACGGTGGACGTGATGGATGTCAGTACGCAGAAAGGCTCAGAGATGAGCATGTCGCAGTTTGTTCGTTATTACGAAACtccagaggaagagagagacaaactGTTTAATGTGATCAGCCTGGAGTTCAGCCACACCAAACTTGAGAACCTGATCCAGAGACCCGCTGTGGTGGATCTGGTGGACTGGGTGGACAACATGTGGCCTCTTCACCTGAAACAGCGCCAAACTGAGGCCACTAACGTCATCTCTGAGATGAAATACCCCAAAGTCCAGCGGTACTGTTTGATGAGTGTTAAGGGATGCTACACTGATTTCCACATCGATTTCGGCGGAACGTCAGTGTGGTACCACGTCTTCAGAGGAGAGAAGGTGTTTTGGTTGATCCCACCCACCCCTTGTAATCTGGACCTGTATGAGCAGTGGGTTCTGTCTGGGAAGCAGAGCGACGTGTTTCTGGGCGATCAGGCCGACGGCTGCCAGCGAATTGTCCTCAAACAGGGGCACACCTTCTTCATCCCATCAGGGTGGATCCACGCTGTGTACACTCCGGAGGatgcgctggtgtttggtgggAATCTGCTGCACAGCTTTAACATCCCCATGCAGCTCCACGTCTACGACATTGAGAACCGCACTAAAGTCCACTCTAAGTTCCGTTACCCATTCTTCTACGAGATGTGCTGGTACGTTCTGGAGAGATACGTGCAGTGTCTCACCAACCAGTCCTACCTCACCCTGGAGTTCAAGACAGATGTTAGACTGActgGTTCAGAGTCTCTGCACTGCAGTCCTGTCTCTGAACTGCGGGCAGATGTGGGCGAGTCCAGTGAGGTGCTAATGGAGACTGAGCGGTCACTTCAGTCCAGTCCgaacacacaccatacacattCCACACACTCTGCAACCTCCTCATCACAACCTACACACCCACCACACACAGTAAGGTTTTCGCTTAAACCTAACGCCATTGGGGACTCTAAAGCCAATGGGGACTCTAAAGCCGTCGGGGACCCTAAAACCAATGGGGACCCTAAAGCCAATGGGGACCCTAAAGATGTGGCATCCGGATGGACTTACCTGACAGAGTTTGAGCTGAACGGTCTGCACGCGCTGGTGGAGAAACTGGAGTCGCTGCCGGAGGGAAAACGCTGCGTTCCAAACGGGATAGAAAACCCCCAGGCTCTGCTGCAGCACATGAAGgcgGTGCTAAAGGAACATGCAGATGATGACCCCCAGCTGGCTGTCACAGGAACACCTATCGTTTGCTGCCCCAAGAAATCCATTAAGCTGCGTCCCCCAGCCGGCCCCCGGTCacgggtgagtgtgtgtagtgggtCGGGTGTAAGTGCAGCGCGGAGTGCGGCGGCACGACGGAGGCGGACACGGTGTAGGCAGTGTGCAGCATGTGTGCGGACTGAGTGCGGGCAGTGCCACTTCTGTAAAGACATGAGAAAGTTTGGCGGGCCGGGAAGGATGAAGCAGACCTGCATCCTCAGACAGTGCATCGCTCCTATGCTGCCTCACACAGcggtgtgtgcagtgtgtggggAGGCAGGAAAGGAGGAAACAGTGGAGTCGGACCTAGAGAAGTTTGGGTTGATGCTGATGGAGTGCTCCATCTGTAATGAGATCATCCACCCAGCCTGcctgaagGAAGCGGGCGGGGTGGTGAATGAGGAGCTACCAAACAGCTGGGAGTGTCCCAAATGCAACCATGCAGGAAAAGCTGGAAAACAGAAAAGGGGTCCGGGCTTTAAATTTGCACCTACCCTCCCAGGTTCTGTAGCCAAGCCCCGCCCCCAACCGGACCTGACAGACAAACTGGATATTAACCGAACTACAGAAATTACCTGTGACTCGTTCGCTGATTCCTCAGCATTAAATCAGAAAACAGAGCCAGAGGACACGCCCATTAGCAAGCCTGACGATGCCAATCAGAAACCCCTCCCCTTTCTGGGGTCATCACCTGTGCTGAAGCCCaaagtggaggaggaggaggaggagcctgTGAACAGGAAGAGGAGGTGCTGTAAGGACTCAGAGCCCAGGAGAAAGAAGGTCTGCTGAaccaatacacaaacacacacacaaacattcacacacactgttaGAATAGAGCAAAGTGATGAAGACATCGGCCAGAAAAACGTGGAGCACAGAGATGAAGATGCAGTGAAAAACAGgtttggaggaggaggagctagAGTTAACCACACCTCCATTTCTCCAAACAGGACGTCAGCATCGCATGATAACAGCCAATCCTGTGGCGAGGAGGATGCTGACAGACAGCTTAAGCCCAGGAGCAAACGGCTGAAGCAGGAACTCCAGAAGGCCGAGGGGAGGTGGGGCCAGTACGGAGTGCTGTCTGGAAACGGTTGCCTGGGCGACTGGCTTGGACCCAAGGAGGAACCAGAGGGGGAGGAGCCTCCAGCAAATAAGGGTCCGCCTTCAGCTGCCACCACCTCCTTACACCAGCCCAACTGCGCTCAGGTGGAACGGCATGTCATCAGGCCGCCGCCCATCTGCCCCCCACCGGACCGCCTTCCACTGAATGATGGCCGGAGCCACGTGATTGGCAGGGAGGAGTGGATGGGTGTGTTCAGTTACCTGCAGTACAGCgagctgtgtatgtgtatgcgCGTCTGCAGGACCTGGAACAGGTGgtGTTGTGATAAGAGTCTGTGGAGGTGGATTGATCTGAGCCGCTGTAAGTCTATCAGTCCCCTGATGTTGAGTGGAGTGATCCGCCGGCAGCCCGTTTCCCTCAACCTCAGTTGGACCAACATCTCCAAGAAGCAGCTCAGCTGGCTAATCACCCGCCTTCCAGGCCTGCGGGAGCTGCAGTTGGCTGGGTGTTCGTGGGCGGCGGTTTCGGCGCTGTGCTCCTCCTCCTGCCCAATGCTGCGGGCGCTGGACCTGCAGTGGGTGGAGGGGCTGAAAGACCAGCAGATCACTGACCTACTGACCCCGCCTTCAGACTACAGaccagGTCAGCAAGACTGCAGCAGTAAGCTCTGTAATGTGGAGGATCTGAATCTGGCTGGGCTGGACATCACGGACCACTCACTCCGCCTCCTCATCAAGCTTCTCCCCTCCCTGACCCGCCTGGACCTCAGCTACTGTAACCACATCACTGACCACAGCATCAACCTCCTCACTGCCGCTGGAACCAGCAGCCGAgacaccctcacacacatcaACCTATcagtgtgtcaCCGGGTGACGGACGTGTCTCTGGTGTATTTTAAACGCTGTGGCAACATCAGCTCCATCGACCTGCGCTCCTGCAGTCAGGTGACCCGGCAGGCCTGTGAGCGCTTCATCGCCGAGATTTCAGTCAGTGTTCAGTTCACCCTGACCGATGACAAACTGCTGACCAGGGTGAGCTAGCCTCCATTAGCTAACCCGACCCGGGCTGACCGCAGGGCGGGTGGTGGGGAATGAACTGCCCAGGGAGGCAGAACAAAGTCCTGCATTCTCCACCAATCTGCAGGACTGCCATGCGGAACCTAGTGTGTCCAGCAGGGGGAGCATCAtccacttttttacatttactcactGCAGATTTTCACTCTGCGTTTGGAAAACCACCTGACATCACTGGACACGGCCCGGGACTGTTCGGACTGTATGTGTTTATAGTAAACAGAACCTTGGCGCAGGTTGCGCTGCGGGACGTAAAAGTAATTTTTGTATCAGAAAGTTGTTTacattgttctttgtttatgtgCATTTTTATCTGCACTCCTGAGCAGAGcagagtttagtttagttccaGCAGATTCCGCTCTGACTGTTTCTACCGTCCTTTAGACCCGATAGAACAGTCCAAACTCTCGGTTGTGTAAACTGCTCTGTTCCGCTAGACCTGGTGTGAATATCTGAGTAACATTTGCACAGTTTAACCCAAATAAATACCTTATTTTTCCTACA

Function

GO: NA

KEGG:

id description
K10276 FBXL10_11, KDM2; F-box and leucine-rich repeat protein 10/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681189.1 True 4484 mRNA 0.54 23 19038310 19048336

Neighbor

gene id symbol gene type direction distance location
LOC103029848 ggt1 coding downstream 32449 18994874 ~ 19005861 (-)
LOC103029209 gpat4,LOC108440151,LOC108277038,LOC107746208,LOC107558124 coding downstream 155139 18873117 ~ 18883171 (-)
LOC103028676 NA coding downstream 168169 18847995 ~ 18870141 (-)
brf2 NA coding downstream 190929 18841071 ~ 18847381 (-)
LOC103045990 aak1b,LOC108440145,LOC107583399 coding downstream 247258 18746248 ~ 18791052 (-)
LOC103031534 NA coding upstream 4655 19052991 ~ 19056252 (-)
rhof rhof,LOC108425170,LOC105014892,LOC106568222 coding upstream 15214 19063550 ~ 19072529 (-)
LOC103047211 LOC108425134 coding upstream 51526 19099862 ~ 19106136 (-)
dgcr2 dgcr2 coding upstream 63698 19112034 ~ 19121657 (-)
dusp11 NA coding upstream 80871 19129207 ~ 19133378 (-)
G177678 NA non-coding downstream 50895 18983812 ~ 18987415 (-)
G177669 NA non-coding downstream 83370 18950852 ~ 18954940 (-)
G177644 NA non-coding downstream 209023 18827603 ~ 18829287 (-)
G177617 NA non-coding downstream 240176 18743510 ~ 18798134 (-)
G177626 NA non-coding downstream 297731 18736864 ~ 18740579 (-)
LOC111195061 NA non-coding upstream 26911 19075247 ~ 19076916 (-)
G177688 NA non-coding upstream 27039 19075375 ~ 19078334 (-)
LOC103033103 NA non-coding upstream 29235 19077571 ~ 19077976 (-)
G177685 NA non-coding upstream 61825 19110161 ~ 19159146 (-)
G177717 NA non-coding upstream 95942 19144278 ~ 19147039 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 103710 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 419698 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 506675 18485642 ~ 18531635 (-)
G177568 NA other downstream 635302 18397582 ~ 18403008 (-)
G177526 NA other downstream 863785 18171849 ~ 18174525 (-)
G177704 NA other upstream 42810 19091146 ~ 19092146 (-)
LOC103035567 LOC103035567,LOC108425166 other upstream 71450 19119786 ~ 19128123 (-)
LOC111194984 sh2d4a other upstream 690313 19738649 ~ 19739313 (-)
G178173 NA other upstream 2243186 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2885183 21933519 ~ 21933831 (-)

Expression


Co-expression Network