adamts6 (adamts6,LOC107685101,LOC107713302,LOC107744255)


Basic Information

Item Value
gene id adamts6
gene name adamts6,LOC107685101,LOC107713302,LOC107744255
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19358122 ~ 19430590 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681196.1
GAGACCGGTGGGCAGCTGCACCGGCCTGCCTGCCTTCAGCTCTCCTGTAGCTTCTTCTTTATCTCCTTATCTGCTGTATTTTACCACGATCCTGCAGCAGCACGAGCCTGCAGCAGCACGagcacacacactaaacaagcAGACACACAGCAAACAACCTGGAAAACATCAACAcaactacaacaacaacaacagcaaagtGAACTACACAGCTGCACACGTGCTAATGAAGCATATGCAACCTGTTCCACAGTCTGGAGTCTTCATGGATCATTAATGGAGCttgattttttgggggggcaTGTCCGTGCACCCCTTGCATTCCCGTGCACGCGCGATCTCCAGTTCTTCCTGCACCGGGACGACTAGTTTCATTCTCATCATCCAGTCGGCATGAAGAGTCACAGAAGAGAGGACTGCAGAAGAAGATTGCACTGGGCTGAAACCCACTGTCTGCATCCTCTACAGTCAATGTAGATGAAGACGGCAGCCAAATGGATAATTCAAGACAACCTCCAAATATAGATCTGCTGCTTTGGAATTACTTGAAGTAATTTGCTTGCACCACTCATGGCTGACCCAAGTTCAGAGGCAGATGCAAGTCAAGTCTGGAGGCTCAGACTTACCAAAGACTTTTGAACCCTGGATCACTCACAGACTTAAAGCtcccccacccccctcccccaccccaTGTCAGATCTTCTCTAAATTATGGAAATTTTTTGGAAGACGCTGACTTGGATATTGAGCCTGCTCTTGGCCGCTGCTGATCCTCAGAGCCTTTCGTACACTTCTCAAGAGGAGTTCCTGTCCCACCTGGAGGACTACCAGCTCACAGTGCCTGTTCGTCTTAACGAGAAGGGCGAGTTCATGAGTTACACTGTGAAACAGCACCGGCCTGGCCGACGGAGACGGGGTCTGGACCAACCTGGACCAGATCACGCTGAGACCAGGCTCTTTTACAGACTCTCAGCTTATGGCAAGCACTTTCACCTGAACCTGACTCTCAACCCCAACCTGGTTTCTAAACATTTCACTGTAGAGTACTGGGGTAAGGATGGGCAGGAGTGGCGGCACTCCACAGTGGATGATTGCCATTATGTTGGATACCTACTGGATCACTACAGCACTACAGGAGTGGCACTAAGTAACTGCAAAGGCTTGCATGGTGTCATCTCCACTGAAGAAGAGCAGTATTTAATAGAGCCATTAAAAGACATAACCTCCAAAAACTCCAGTGATTTCCGGCTCACAGGAGAGGGGCAGCCACATGTTATTTATAAAAAGTCCTCCATCCCTTCACCACAGCAGCCCAGCGAGGAGTTCAGTTGTGGTGTCTCAGACCTCACATTAAGCCAGACACCATGTTTGGGAACCAGTCCTGCCCCATTGTCCCCGTCTCCAGTACAAAATAATGGCAGCTCCAGCAACGCACACCGGCAGCGGCGCTCTGTCAGCACTGAGCGTTTCGTAGAAACTCTGGTGGTGGCTGACAAAATGATGGTGGGCTACCATGGCCGCAAGGACATTGAGCACTACATCCTGTCTGTCATGAATATTGTTGCCAAACTTTACCGTGATGCCAGTCTAGGAAACGTTGTGAACATTATTGTAACCAGACTGATTGTTTTAACTGAAGACCAGCCCAACTTGGAGATTAACCACCATGCAGACAAGTCTCTGGATAGTTTCTGCAAGTGGCAGAAATCCCTCCTCTCTCATCAGGGAGATGGAAACAGCATCCCAGAGAATGGCATAGCTCACCACGACAACGCTGTTCTCATCACAAGGTTCGACATCTGCACCTACAAAAATAAGCCATGTGGTACACTCGgCCTGGCGTCTGTAGCTGGAATGTGTGAACCAGAGAGGAGCTGCAGCATTAACGAAGACATAGGACTGGGTTCTGCTTTCACCATCGCACATGAGATCGGACACAACTTCGGAATGAATCACGATGGAATAGGGAACACCTGTGGGACCAAAGGCCACGAAACGGCCAAACTGATGGCGGCGCACATCACGGCCAATACCAACCCATTTTCCTGGTCCACCTGCAGCAAAGACTACATCACCAGCTTCCTAGActcAGGTCGGGGAACGTGTCTGGACAATGAGCCTCTGAAACGAGACTTCCTGTACCCCACAGTGGCTCCGGGGCAGGTGTACGATGCGGACGAGCAGTGTCGTTTCCAGTACGGCGCCTCCTCCAGACAGTGCAAATATGGGGAAGTGTGTAGAGAGCTCTGGTGCCTTAGCAAAAGTAACCGCTGTGTCACCAACAGTATCCCAGCCGCAGAGGGAACACTCTGCCAGACTGGCAGCATTGAGAAAGGGTGGTGCTACCAGGGCGAGTGTGTGACTTTTGGGACGTGGCCGCAGAGCGTGGATGGTGGCTGGGGACCTTGGTCCATGTGGGGCGAGTGCAGCAGGACTTGTGGTGGTGGAGTATCCTCATCCATGCGCCACTGTGACAGCCCAGCGCCGTCTGGTGGAGGAAAGTACTGTCTTGGGGAGAGAAAGCGCTACAGGTCATGCAACACTGATGCCTGTCCAACAGGGTCACGAGACTTCAGAGAAAAGCAGTGTGCCGACTTTGACAGCATGCCTTTCCGTGGGAAGTACTACAACTGGAAACCTTACACTGGAGGTGGCGTGAAGCCCTGTGCTCTGAACTGCCTGGCCGAGGGCTACAACTTCTACACGGAGCGCGCCCCTGCTGTCATCGACGGCACACGCTGCCAGGCCGACTCTCTAGATATCTGCATCAACGGAGAGTGTAAGCATGTGGGCTGCGACAACATCCTTGGATCGGATGCTAAAGAGGACAGATGTCGTGTTTGTGGAGGAGATGGCAGCACATGTGAAGCTACTGAAGGCCTGTTCAATGACTCCCTGCCCAGAGGAGgTTACATGGAGGTGGTCCAGATCCCCAGGGGTTCAGTTCACATTGAGATCAAAGAGGTGGCCATGTCAAAGAACTATATTGCTTTAAAATCCGAGGGAGATGATTATTACATCAACGGTGCATGGACCATCGACTGGCCTCGTAAGTTCGACATTGCAGGAACAGCGTTTCACTACAAGAGATCTGCAGATGAGCCTGAGTCTCTGGAAGCACTTGGAGCAACTTCTGAAAACCTGGTTGTCATGGTACTACTACAAGAGCAAAACCAGGGCATTCGTTACAAGTTCAATGTGCCTATACAGCGCACTGGCAGCGGGGATAATGAGGTGGGCTTCTCCTGGCATCATCTGCCGTGGTCCGAATGCTCCTCCACCTGTGCAGGAGGTTCTCAGAAACAGGAGGTGGTTTGCAAGAGGCTGGACGACAACTCGGTGGTCCAGAACAGCTACTGCGACCTTGATATCAAACCGCCCGAGAATCAAAGACCCTGCAACACAGAACCTTGCCCACCTGAatGGTTTATCGGAGACTGGTTGGACTGTAGTAAAACGTGTGATGGAGGGATGCGTACGCGCACTGTTCTCTGTATTCGCAAAACTGGACCAGCAGAGGAGGAGAACCTCGAAGACAGTCACTGCCTGACCCATCGACCCATTGAACGCGAATCCTGCAACAATCAGTCCTGTCCTCCTCAGTGGGTAACTCTGGATTGGTCAGAGTGTACCCCAAAGTGTGGCCCAGGCTTCAAACACCGCAACGTTTTGTGCAAGAGTAGTGACCTGACCAAAACCTTCCCACCAGCTCTATGTTCAGACCATAACAAACCCCCAGTCCGAATCCGCTGCAGTCTGGGCCGCTGTCCTCCACCACGCTGGATCCCtggagagtggggacagTGTTCAGCACAGTGTGGGCTGGGACAGCAGATGCGGACAGTGCAGTGTCTCTCATACACAGGGCAGCTCTCCAACGAGTGTCCCGAGTCGCTGCGACTCAGCACTATGCAGCAGTGTGAGAGCAAGTGTGATGCTACCCCCATCTCCAACGGTGACGAGTGCAAAGATGTAAACAAGGTGGCATATTGCCCACTGGTGCTGAAGTTCAAGTTCTGCAGCCGTGCCTACTTCAGACAGATGTGCTGCAAGACTTGCCAAGGACACTGatcctacagagagagagagcaagagagaaaaagagagagagaggaagagaagaggggagagaaaaaaaagacgcagaggaAAGGATAGCGTatacagaagaacagaaaagcAGTCGTGGGCTGGAAGAGCAGCACAAGGCAAAGAAACTGCtgtctcctcttctctctcactctctccctttctctctctctgtctctctcactctctctctctttattacacacacatacacacacaacactcctGCTTTCTTACACCTGTGGAACCCATACCACTGGTCAGCAACATGCtgacacattttgttttattttcacttcTGTGAAGTTGGAACTTgatcattattgttattttattataataataataattgttattattgtaattattgttattattattgttgttattgttattgatgTCTATCTGTTTTGTAATCCAAAGTGCTGGACACATCCTTTGCAGAAGTGGCACAGCTGAGAACCTTTTTtccaaaaaggaaacaaaacaaaactgggaa
>XM_022681197.1
tagcttaactaGCTGCCTAGGGTTAAcaaaatttgtcatttttaacgTTTTTGCTTAATTATGTCAAGTTTAAGATGGTAAATAAGTTGTTTTCTGtgatttaaaagctttttaaccATCTGTTTTTGTAGCTTAAGCAGATTTTTGCTGAGGTAACTTTCACTCAAAAGTGACGGCTAGAGCGTCGTCGTTGCTCTTGCGGTAACGTTACGCTAGTTTAGAGAGTTTTCTTCGTATTTAAGGGGCCAGTGTAATGTACTTGGGCCGGTTGCCAGCTGTCTGGGTCAGACACGTTTCAGACACCCAGCCAGACTCAACTACTCCACTCTGCCGTCTGGGGTTTTTGGTTCATTTCTTTCAGAGGCAGTGAAATGTGGAGCCGGTGCTTTTCTAGCGCTGCTGCCTTCGCGTTAACGCAGGCTGCTTCTAACAGAGTAGTTTGTGTTAATTTCCTAACTTCTCGCAGAGATTTGGCATTTTTCTCCTTCTGGTTGACACTTCGAATGATCATCATTGCTGCTCTAAGGGCAGCCAAATGGATAATTCAAGACAACCTCCAAATATAGATCTGCTGCTTTGGAATTACTTGAAGTAATTTGCTTGCACCACTCATGGCTGACCCAAGTTCAGAGGCAGATGCAAGTCAAGTCTGGAGGCTCAGACTTACCAAAGACTTTTGAACCCTGGATCACTCACAGACTTAAAGGTGAAGTTCAAGAATATCAAGGATGCTCATCCTCATGGGCGTGTTATGGTGCAAGGCTGGATTGACTGAAGTGTTTTAATTCTCGTGTAGCtcccccacccccctcccccaccccaTGTCAGATCTTCTCTAAATTATGGAAATTTTTTGGAAGACGCTGACTTGGATATTGAGCCTGCTCTTGGCCGCTGCTGATCCTCAGAGCCTTTCGTACACTTCTCAAGAGGAGTTCCTGTCCCACCTGGAGGACTACCAGCTCACAGTGCCTGTTCGTCTTAACGAGAAGGGCGAGTTCATGAGTTACACTGTGAAACAGCACCGGCCTGGCCGACGGAGACGGGGTCTGGACCAACCTGGACCAGATCACGCTGAGACCAGGCTCTTTTACAGACTCTCAGCTTATGGCAAGCACTTTCACCTGAACCTGACTCTCAACCCCAACCTGGTTTCTAAACATTTCACTGTAGAGTACTGGGGTAAGGATGGGCAGGAGTGGCGGCACTCCACAGTGGATGATTGCCATTATGTTGGATACCTACTGGATCACTACAGCACTACAGGAGTGGCACTAAGTAACTGCAAAGGCTTGCATGGTGTCATCTCCACTGAAGAAGAGCAGTATTTAATAGAGCCATTAAAAGACATAACCTCCAAAAACTCCAGTGATTTCCGGCTCACAGGAGAGGGGCAGCCACATGTTATTTATAAAAAGTCCTCCATCCCTTCACCACAGCAGCCCAGCGAGGAGTTCAGTTGTGGTGTCTCAGACCTCACATTAAGCCAGACACCATGTTTGGGAACCAGTCCTGCCCCATTGTCCCCGTCTCCAGTACAAAATAATGGCAGCTCCAGCAACGCACACCGGCAGCGGCGCTCTGTCAGCACTGAGCGTTTCGTAGAAACTCTGGTGGTGGCTGACAAAATGATGGTGGGCTACCATGGCCGCAAGGACATTGAGCACTACATCCTGTCTGTCATGAATATTGTTGCCAAACTTTACCGTGATGCCAGTCTAGGAAACGTTGTGAACATTATTGTAACCAGACTGATTGTTTTAACTGAAGACCAGCCCAACTTGGAGATTAACCACCATGCAGACAAGTCTCTGGATAGTTTCTGCAAGTGGCAGAAATCCCTCCTCTCTCATCAGGGAGATGGAAACAGCATCCCAGAGAATGGCATAGCTCACCACGACAACGCTGTTCTCATCACAAGGTTCGACATCTGCACCTACAAAAATAAGCCATGTGGTACACTCGgCCTGGCGTCTGTAGCTGGAATGTGTGAACCAGAGAGGAGCTGCAGCATTAACGAAGACATAGGACTGGGTTCTGCTTTCACCATCGCACATGAGATCGGACACAACTTCGGAATGAATCACGATGGAATAGGGAACACCTGTGGGACCAAAGGCCACGAAACGGCCAAACTGATGGCGGCGCACATCACGGCCAATACCAACCCATTTTCCTGGTCCACCTGCAGCAAAGACTACATCACCAGCTTCCTAGActcAGGTCGGGGAACGTGTCTGGACAATGAGCCTCTGAAACGAGACTTCCTGTACCCCACAGTGGCTCCGGGGCAGGTGTACGATGCGGACGAGCAGTGTCGTTTCCAGTACGGCGCCTCCTCCAGACAGTGCAAATATGGGGAAGTGTGTAGAGAGCTCTGGTGCCTTAGCAAAAGTAACCGCTGTGTCACCAACAGTATCCCAGCCGCAGAGGGAACACTCTGCCAGACTGGCAGCATTGAGAAAGGGTGGTGCTACCAGGGCGAGTGTGTGACTTTTGGGACGTGGCCGCAGAGCGTGGATGGTGGCTGGGGACCTTGGTCCATGTGGGGCGAGTGCAGCAGGACTTGTGGTGGTGGAGTATCCTCATCCATGCGCCACTGTGACAGCCCAGCGCCGTCTGGTGGAGGAAAGTACTGTCTTGGGGAGAGAAAGCGCTACAGGTCATGCAACACTGATGCCTGTCCAACAGGGTCACGAGACTTCAGAGAAAAGCAGTGTGCCGACTTTGACAGCATGCCTTTCCGTGGGAAGTACTACAACTGGAAACCTTACACTGGAGGTGGCGTGAAGCCCTGTGCTCTGAACTGCCTGGCCGAGGGCTACAACTTCTACACGGAGCGCGCCCCTGCTGTCATCGACGGCACACGCTGCCAGGCCGACTCTCTAGATATCTGCATCAACGGAGAGTGTAAGCATGTGGGCTGCGACAACATCCTTGGATCGGATGCTAAAGAGGACAGATGTCGTGTTTGTGGAGGAGATGGCAGCACATGTGAAGCTACTGAAGGCCTGTTCAATGACTCCCTGCCCAGAGGAGgTTACATGGAGGTGGTCCAGATCCCCAGGGGTTCAGTTCACATTGAGATCAAAGAGGTGGCCATGTCAAAGAACTATATTGCTTTAAAATCCGAGGGAGATGATTATTACATCAACGGTGCATGGACCATCGACTGGCCTCGTAAGTTCGACATTGCAGGAACAGCGTTTCACTACAAGAGATCTGCAGATGAGCCTGAGTCTCTGGAAGCACTTGGAGCAACTTCTGAAAACCTGGTTGTCATGGTACTACTACAAGAGCAAAACCAGGGCATTCGTTACAAGTTCAATGTGCCTATACAGCGCACTGGCAGCGGGGATAATGAGGTGGGCTTCTCCTGGCATCATCTGCCGTGGTCCGAATGCTCCTCCACCTGTGCAGGAGGTTCTCAGAAACAGGAGGTGGTTTGCAAGAGGCTGGACGACAACTCGGTGGTCCAGAACAGCTACTGCGACCTTGATATCAAACCGCCCGAGAATCAAAGACCCTGCAACACAGAACCTTGCCCACCTGAatGGTTTATCGGAGACTGGTTGGACTGTAGTAAAACGTGTGATGGAGGGATGCGTACGCGCACTGTTCTCTGTATTCGCAAAACTGGACCAGCAGAGGAGGAGAACCTCGAAGACAGTCACTGCCTGACCCATCGACCCATTGAACGCGAATCCTGCAACAATCAGTCCTGTCCTCCTCAGTGGGTAACTCTGGATTGGTCAGAGTGTACCCCAAAGTGTGGCCCAGGCTTCAAACACCGCAACGTTTTGTGCAAGAGTAGTGACCTGACCAAAACCTTCCCACCAGCTCTATGTTCAGACCATAACAAACCCCCAGTCCGAATCCGCTGCAGTCTGGGCCGCTGTCCTCCACCACGCTGGATCCCtggagagtggggacagTGTTCAGCACAGTGTGGGCTGGGACAGCAGATGCGGACAGTGCAGTGTCTCTCATACACAGGGCAGCTCTCCAACGAGTGTCCCGAGTCGCTGCGACTCAGCACTATGCAGCAGTGTGAGAGCAAGTGTGATGCTACCCCCATCTCCAACGGTGACGAGTGCAAAGATGTAAACAAGGTGGCATATTGCCCACTGGTGCTGAAGTTCAAGTTCTGCAGCCGTGCCTACTTCAGACAGATGTGCTGCAAGACTTGCCAAGGACACTGatcctacagagagagagagcaagagagaaaaagagagagagaggaagagaagaggggagagaaaaaaaagacgcagaggaAAGGATAGCGTatacagaagaacagaaaagcAGTCGTGGGCTGGAAGAGCAGCACAAGGCAAAGAAACTGCtgtctcctcttctctctcactctctccctttctctctctctgtctctctcactctctctctctttattacacacacatacacacacaacactcctGCTTTCTTACACCTGTGGAACCCATACCACTGGTCAGCAACATGCtgacacattttgttttattttcacttcTGTGAAGTTGGAACTTgatcattattgttattttattataataataataattgttattattgtaattattgttattattattgttgttattgttattgatgTCTATCTGTTTTGTAATCCAAAGTGCTGGACACATCCTTTGCAGAAGTGGCACAGCTGAGAACCTTTTTtccaaaaaggaaacaaaacaaaactgggaa

Function

symbol description
adamts6 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and thymus. Orthologous to human ADAMTS6 (ADAM metallopeptidase with thrombospondin type 1 motif 6).

NR:

description
PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 6

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08621 ADAMTS6; a disintegrin and metalloproteinase with thrombospondin motifs 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681196.1 False 4588 mRNA 0.51 26 19358122 19430590
XM_022681197.1 True 4719 mRNA 0.50 25 19358122 19429085

Neighbor

gene id symbol gene type direction distance location
srek1ip1 srek1ip1,LOC107658680,LOC107744254,LOC107685105,LOC107713259 coding downstream 98205 19256089 ~ 19259917 (-)
plac8 plac8 coding downstream 108327 19246002 ~ 19249795 (-)
lin54 lin54,LOC107744261 coding downstream 122514 19219834 ~ 19235608 (-)
inip inip,LOC107658659,LOC107558675,LOC107571239 coding downstream 144744 19210880 ~ 19213378 (-)
LOC103047514 NA coding downstream 172453 19182249 ~ 19185669 (-)
trim23 trim23,LOC107658681 coding upstream 19155 19449745 ~ 19458441 (-)
sgtb sgtb,LOC107667268,LOC107558703,LOC107548671,LOC107705058 coding upstream 45738 19476328 ~ 19507826 (-)
LOC103041684 tjp2 coding upstream 345214 19775804 ~ 19832975 (-)
LOC103023098 LOC108428883,LOC107705047,LOC107667273,LOC107726562,LOC107558698 coding upstream 405042 19835632 ~ 19863882 (-)
kcnv2 kcnv2,kcnv2a,LOC108428855,LOC107558705,LOC107667263,LOC107726563 coding upstream 508105 19938695 ~ 19942763 (-)
G177762 NA non-coding downstream 16273 19341542 ~ 19341849 (-)
G177751 cwc27,LOC107744252,LOC107713303 non-coding downstream 91655 19261021 ~ 19266467 (-)
G177746 cops4,csn4,LOC106562268 non-coding downstream 117358 19237351 ~ 19240764 (-)
G177734 NA non-coding downstream 138727 19217115 ~ 19219395 (-)
G177735 NA non-coding downstream 142012 19214306 ~ 19216110 (-)
G177766 NA non-coding upstream 17178 19447768 ~ 19449065 (-)
G177769 trappc13,LOC107667267 non-coding upstream 40532 19471122 ~ 19472634 (-)
G177779 NA non-coding upstream 59811 19490401 ~ 19490877 (-)
G177783 NA non-coding upstream 78708 19509298 ~ 19555843 (-)
G177808 NA non-coding upstream 289737 19720327 ~ 19722425 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 229999 19119786 ~ 19128123 (-)
G177704 NA other downstream 265976 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 423522 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 739510 18614892 ~ 18618612 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 826487 18485642 ~ 18531635 (-)
LOC111194984 sh2d4a other upstream 308059 19738649 ~ 19739313 (-)
G178173 NA other upstream 1860932 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 2502929 21933519 ~ 21933831 (-)
G178426 NA other upstream 3024907 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 3070728 22501318 ~ 22509783 (-)

Expression


Co-expression Network