nln (nln,LOC107705053,LOC107667266,LOC107548669)


Basic Information

Item Value
gene id nln
gene name nln,LOC107705053,LOC107667266,LOC107548669
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19503557 ~ 19522073 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681199.1
GAGAATTTAAGttcttataatattttataatagtgAAATATCACTATTTGAGTTTTTACTTGGATTCATTGGGTAAGGCTGATTCATTGAAAAGAATCGGTTTAGATTAACTCGATTCACTCGCGCGTGCAATGTATTCCCTCAGCATGGTTGTGGTTCGAGCCGGTTTCTGCAGAGTTTTCCGCTGCAGCTCCAGAGTCAGGATGACCCTTCTGAACGAATTGGAAGTTTCATCCAGGAACTGTTCAAACTCTGCTGACAACAGGAACGATCTGAGATGGGATCTGAGCCCAGAGGAGATCAAACACAGGACGGAGAGGCTGATCCAGCGGATAAAGCAAGCCTACGACTCGGTTGGTTCGGTGGAGATTGGTAAAGTGTGTGCTGACAACACTCTGCAAATCCTGGCAGATGCTAAACTGGATTACGCTGCTTCCCGCCATGTGCTGGACTTCCCGCAGTACGTGTCCCCGTGCAAAGAGGTGCGATCTGCAAGCACTGAGGCTGACAAGCGCCTGTCGGAGTTTGACGTGGAGATGAGCATGAGAGCAGACGTGTTCCAGAGGCTTGTAGCCCTGCAGGAAAGACAACCCAACAGTTTATCTCCAGAGTCTAAAAGATTAATGGAGAGGTGGATCAAACTCGGGAGACGGAATGGGCTGCACCTGTCTGCACAAGTACAAGAAGAGATCAAAAATCTCTCTAAGCAAATAAGTGAACTTTCCATTGATTTTAATCAGAACATTAATGAAGAGAATACCGTTCTGATCTTCTCTCCAGAGGAGTTGGGTGGTCTTGCGGAGAGCTATATGAACGGTCTGGAGAAGACAGAGGATGGGTGCTACAAGGTTAGCCTGGCTTACCCTCACTATTTCCCTCTGATGAAGAGATGTCATGTTCCAGACACCAGAAGAAAGATGGAGAAGGCTTTTCACAGCAGGTGTAAAGAGgTGAACACGGAAATACTTGAACAGCTGATTGAGCTGCGGGCAAAGGTGGCTAAACTTCTTGGTTTCACCAACCATGCTAACTACGTGCTGGAGATGAACATGGCCAAGAACACCAAGAATGTGGCTTGTTTCCTTGATGAGCTCCTTGAGAAGCTGAAGCCGGTGGGCGTGAAGGAGAGGCAGTACCTGCTGTCACTCAAACAGGCAGAGTGTCACAGGCGAGGGCTGGAGTTCGATGGTCAGCTGAACGCGTGGGATTTGCCGTATTTCATGAACCAGGTGGAGCAGGTGAAGTTCTCGGTGAATAAGGACAAGCTGCTGGAGTACTTCCCTCTGGAGGTGGTGACGCAGGGCCTGCTGGGAATCTACCAGGACCTGCTGGGGCTCATGTTCAAGCAGGTCCAGAATCCACATGTGTGGCACGAGAGCGTGAAGCTCTACACCGTCCACGACTCCACAACCGGGGAGGAAATCGGACAGTTTTATCTGGACTTACATCCCAGGGAGGGGAAATATGGCCATGCTGCATGCTTCGGACTCCAGCCAGGCTGTCTCGGGCCTGATGGGACACGTAGGATCCCAGTGGCGGCCATGGTGGCCAACTTCACCAAACCGACACGTAACTGGCCTTCTCTACTCCAGCACCATGAAGTGGAGACCTTCTTCCATGAGTTCGGCCACGTTATGCATGAGCTGTGCTCCAAGACTCGCTACGCAGAGTTCAGCGGCACGCTGGTGGAGACGGATTTCGTGGAGGTGCCGTCTCAGATGCTGGAGAACTGGGTGTGGGAGAAAGAGCCGCTGAGGAGGATGTCCCAACACTACAAGGACGGCAGCCCCATCCCCGACGACCTGCTGAATAAACTCATCACCTCCAGAGTGGCCAACACTGGTCTGATGAACCTCAGGCAGATCGTTCTGGGTAAAGTGGATCAAGTGCTCCACACTAAGGCCTCTGCAGACACTGCAGCTGAGTTCGCCAAACACTGCAAGGAAATCTTGGGCATTCCAGCCACAGCAGgGACGAACATGACGGCGAGTTTCAGTCATCTGGCCGGGGGATATGATGGACAGTACTACAGCTACCTGTGGAGTGAAGTCTACTCTATGGACATTTTCTTCAGCCGCTTCAAAAAGGAGGGAATCATGAACCCAAAGGTGGGGAAAGAGTACAGGAGCGTGATTCTGGAGGCTGGAGGCTCAGTGGACGGGATGGAGATGCTGAGAGTGTTTTTGGGTCGAGAGCCGTGTCAGGATGCTTTCTTCCAATGTAAAGGACTGGCCCAGATCCAAAACGGACGGAACTGTTGAATTAACTGCTCATTACAGTATTAATGGGAAAATAGCTGTTTTTTCATCTTTCTAAATGTACCACAATCTGTTATTTATATGTACgcatatttatatgttttagaGACTGCAGAATTTGTTGTTCTTACAACTTCAGAgagtttgtatatttttgtagatTGTTCAATTTGTGTTCAAATAATCTTTTGTATCATTAATAAATTACTTGATCATGTAA
>XM_022681200.1
TATTGCTCAGCCCTGCCTCTAAAGTCACAGActtgcttgtttatttatttatacaccaGAGAACAACTTAAAGCACTCAATAAATGCCTTCTTTGGCACCTTTAAGAGTGATTGGCATTTTATGGGCATGCCCTCAGGTCAGCTCTGGTGTCTGGTGTGAATCAGAAGCTGTGAATGAGAGGCCAGACGGATCGGAAGCTGTGAATACAAAGCCGAACTCAGCCCTCTGAAATGAACTCTCGATAATCTAACAGCCATGTGTGGGTCGTTGTAGGTTTCGGAAGGAGGGATCAGGTTCCCCTCGCCATGCTTTCAGGGTAAAGGAGAAGGTGAGCAGGCTTCGTACGTGTGCAGCTGCGAGGAGCTCGGCTTTCTGCCCTCAGGAGTTTACAATCTGTTTGTCTAAGGGTTAAAAATATCTGAAGACGTCTCTTCTGTCGTCTCACGGCTGGATTCGGTAGAGTTTTCCGCTGCAGCTCCAGAGTCAGGATGACCCTTCTGAACGAATTGGAAGTTTCATCCAGGAACTGTTCAAACTCTGCTGACAACAGGAACGATCTGAGATGGGATCTGAGCCCAGAGGAGATCAAACACAGGACGGAGAGGCTGATCCAGCGGATAAAGCAAGCCTACGACTCGGTTGGTTCGGTGGAGATTGGTAAAGTGTGTGCTGACAACACTCTGCAAATCCTGGCAGATGCTAAACTGGATTACGCTGCTTCCCGCCATGTGCTGGACTTCCCGCAGTACGTGTCCCCGTGCAAAGAGGTGCGATCTGCAAGCACTGAGGCTGACAAGCGCCTGTCGGAGTTTGACGTGGAGATGAGCATGAGAGCAGACGTGTTCCAGAGGCTTGTAGCCCTGCAGGAAAGACAACCCAACAGTTTATCTCCAGAGTCTAAAAGATTAATGGAGAGGTGGATCAAACTCGGGAGACGGAATGGGCTGCACCTGTCTGCACAAGTACAAGAAGAGATCAAAAATCTCTCTAAGCAAATAAGTGAACTTTCCATTGATTTTAATCAGAACATTAATGAAGAGAATACCGTTCTGATCTTCTCTCCAGAGGAGTTGGGTGGTCTTGCGGAGAGCTATATGAACGGTCTGGAGAAGACAGAGGATGGGTGCTACAAGGTTAGCCTGGCTTACCCTCACTATTTCCCTCTGATGAAGAGATGTCATGTTCCAGACACCAGAAGAAAGATGGAGAAGGCTTTTCACAGCAGGTGTAAAGAGgTGAACACGGAAATACTTGAACAGCTGATTGAGCTGCGGGCAAAGGTGGCTAAACTTCTTGGTTTCACCAACCATGCTAACTACGTGCTGGAGATGAACATGGCCAAGAACACCAAGAATGTGGCTTGTTTCCTTGATGAGCTCCTTGAGAAGCTGAAGCCGGTGGGCGTGAAGGAGAGGCAGTACCTGCTGTCACTCAAACAGGCAGAGTGTCACAGGCGAGGGCTGGAGTTCGATGGTCAGCTGAACGCGTGGGATTTGCCGTATTTCATGAACCAGGTGGAGCAGGTGAAGTTCTCGGTGAATAAGGACAAGCTGCTGGAGTACTTCCCTCTGGAGGTGGTGACGCAGGGCCTGCTGGGAATCTACCAGGACCTGCTGGGGCTCATGTTCAAGCAGGTCCAGAATCCACATGTGTGGCACGAGAGCGTGAAGCTCTACACCGTCCACGACTCCACAACCGGGGAGGAAATCGGACAGTTTTATCTGGACTTACATCCCAGGGAGGGGAAATATGGCCATGCTGCATGCTTCGGACTCCAGCCAGGCTGTCTCGGGCCTGATGGGACACGTAGGATCCCAGTGGCGGCCATGGTGGCCAACTTCACCAAACCGACACGTAACTGGCCTTCTCTACTCCAGCACCATGAAGTGGAGACCTTCTTCCATGAGTTCGGCCACGTTATGCATGAGCTGTGCTCCAAGACTCGCTACGCAGAGTTCAGCGGCACGCTGGTGGAGACGGATTTCGTGGAGGTGCCGTCTCAGATGCTGGAGAACTGGGTGTGGGAGAAAGAGCCGCTGAGGAGGATGTCCCAACACTACAAGGACGGCAGCCCCATCCCCGACGACCTGCTGAATAAACTCATCACCTCCAGAGTGGCCAACACTGGTCTGATGAACCTCAGGCAGATCGTTCTGGGTAAAGTGGATCAAGTGCTCCACACTAAGGCCTCTGCAGACACTGCAGCTGAGTTCGCCAAACACTGCAAGGAAATCTTGGGCATTCCAGCCACAGCAGgGACGAACATGACGGCGAGTTTCAGTCATCTGGCCGGGGGATATGATGGACAGTACTACAGCTACCTGTGGAGTGAAGTCTACTCTATGGACATTTTCTTCAGCCGCTTCAAAAAGGAGGGAATCATGAACCCAAAGGTGGGGAAAGAGTACAGGAGCGTGATTCTGGAGGCTGGAGGCTCAGTGGACGGGATGGAGATGCTGAGAGTGTTTTTGGGTCGAGAGCCGTGTCAGGATGCTTTCTTCCAATGTAAAGGACTGGCCCAGATCCAAAACGGACGGAACTGTTGAATTAACTGCTCATTACAGTATTAATGGGAAAATAGCTGTTTTTTCATCTTTCTAAATGTACCACAATCTGTTATTTATATGTACgcatatttatatgttttagaGACTGCAGAATTTGTTGTTCTTACAACTTCAGAgagtttgtatatttttgtagatTGTTCAATTTGTGTTCAAATAATCTTTTGTATCATTAATAAATTACTTGATCATGTAA

Function

symbol description
nln Predicted to enable metalloendopeptidase activity. Predicted to be involved in peptide metabolic process and proteolysis. Predicted to be active in mitochondrial intermembrane space. Is expressed in hypaxial myotome region; musculature system; myotome; and pectoral fin musculature. Orthologous to human NLN (neurolysin).

NR:

description
neurolysin, mitochondrial-like isoform X2

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01414 prlC; oligopeptidase A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681199.1 False 2478 mRNA 0.49 13 19503557 19522073
XM_022681200.1 True 2764 mRNA 0.49 13 19505252 19522073

Neighbor

gene id symbol gene type direction distance location
trappc13 trappc13,LOC107667267 coding upstream 28380 19459956 ~ 19475177 (+)
ppwd1 ppwd1 coding upstream 57899 19432487 ~ 19445658 (+)
cwc27 cwc27,LOC102784682 coding upstream 178156 19261204 ~ 19325401 (+)
fam159b NA coding upstream 248750 19252744 ~ 19254807 (+)
cops4 cops4,csn4,LOC106562268 coding upstream 258970 19237435 ~ 19244587 (+)
erbin erbin,erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960 coding downstream 72028 19594101 ~ 19651418 (+)
LOC103023409 co-prmt,LOC108428880 coding downstream 374664 19896737 ~ 19918977 (+)
pum3 pum3,k0020,LOC107705054,LOC107742987 coding downstream 397804 19919877 ~ 19932820 (+)
LOC103030097 NA coding downstream 627185 20149258 ~ 20150118 (+)
LOC103027562 NA coding downstream 630388 20152461 ~ 20155315 (+)
G177506 NA non-coding upstream 9183 19494175 ~ 19494374 (+)
G177485 NA non-coding upstream 23715 19411626 ~ 19479842 (+)
G177479 NA non-coding upstream 101876 19397948 ~ 19401681 (+)
G177472 NA non-coding upstream 144808 19353968 ~ 19358749 (+)
G177449 NA non-coding upstream 287437 19214411 ~ 19216120 (+)
LOC111195062 NA non-coding downstream 4854 19526927 ~ 19551020 (+)
G177819 NA non-coding downstream 217307 19739380 ~ 19739598 (+)
G177822 NA non-coding downstream 219551 19741624 ~ 19741851 (+)
G177826 tjp2 non-coding downstream 253767 19775840 ~ 19779536 (+)
G177830 NA non-coding downstream 273071 19795144 ~ 19833110 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 945113 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 1173068 18324873 ~ 18330489 (+)
G177219 NA other upstream 1277424 18224273 ~ 18226133 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 1329039 18138712 ~ 18174518 (+)
G176882 inpp5j other upstream 2456568 17042835 ~ 17046989 (+)
LOC111194983 NA other downstream 198228 19720301 ~ 19722560 (+)
LOC103042206 LOC108428882 other downstream 228869 19750942 ~ 19775791 (+)
LOC103043854 NA other downstream 567165 20089238 ~ 20096711 (+)
G177950 NA other downstream 616749 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 874304 20396377 ~ 20399165 (+)

Expression


Co-expression Network