erbin (erbin,erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960)


Basic Information

Item Value
gene id erbin
gene name erbin,erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19594101 ~ 19651418 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681204.1
atgagCTCTAAGCGGAGTCTGTTTGTGCGGCTGGTGCCGTGCCGGTGTCTGCGGGGGGAGGAGGAGACTGTCACACAGCTGGATTACTCCCACTGCAGCCTGGAGCAGGTGCCCAAAGAGATCTTCGGCTTCGAGAAGACGCTGGAGGAGCTCTACCTGGACGCCAACCAGATCGAGGAGCTGCCTAAAcAACTGTTTAACTGCCAGTTACTGCACCGGCTGAGTCTGCCAGACAACGACCTCACCGTACTGCCGCCGGCCATCGCTAACCTCATCAATCTCAGGGAGCTTGACGTCAGCAAGAACAGCATTCAGGAGTTTCCTGAGAACATTAAGAACTGCAAGGTCCTGACCATCGTTGAAGCGAGCGTGAATCCCATTTCAAAacTCCCAGAAGGATTCACGCAGCTCCTCAGTCTGACCCAGCTCTACCTGAATGATGCCTTCCTTGAGTTCCTGCCAGCCAGCTTTGGCAGGCTCACCAAACTGCAGATCCTGGAGCTCCGGGAGAACCAGTTAAAGATGCTGCCAAAaAGCATGCATAAACTCACGCAGCTGGAGCGTCTGGACCTGGGGAGTAACGAGTTCACTGAAGTGcCTGAGGTTTTGGAACAGCTGACAGGAATAAAGGAGCTGTGGATGGATGGGAATAAACTCACGATGGTACCCGGGATGGTTGGGATGCTGAAACAGCTGACCTACCTGGACGTGTCTAAGAACAACGTGGAGCTGGTGGATGAGCAGATCAATGGCTGTGAGAACCTGCAGGACCTGCTGCTGTCCAACAATGCCCTCACACAGCTACCCGGCTCTATAggtTCTCTGAAGAAGCTGACGGCTCTGAAAGTGGATGAGAATCAGCTGGTGTGTCTGCCGGACTCTATAGGCGGGTTGTCTGCTCTGGACGAGCTGGACTGCAGCTTTAATGAAATAGAGTCTCTACCCGCTGCTATTGGTCAGTGTGTAAACCTGCGCACTTTTGCAGCTGATCACAACTTCCTCAGCCAGCTGCCTCCGGAGATGGGCTGCTGGAAGAATGCCACCGTTCTGTTCCTGCACTCCAACAAGCTGGAGTCTCTGCCGGAGGAGATGGGCGACATGCAGAAACTCAAGGTCGTCAATCTCAGCGACAACAAGCTGAAGAACCTTCCCTACAGTTTCACCAAACTCAATCAGATGACCGCTATGTGGCTCTCTGAGAACCAGTCCAAGCCCCTCATCCCCCTGCAGAAGGAGGAGGATCCAGAGACGCACAAAACGGTCCTCACCAACTACATGTTCCCACAGCAGAGCCGAGCTGAAGAATatgtgCCTAATTCAGACAGTGAGAGCTTTAACCCGACTCTGTGGGAGGAGCAGAGGAAGCAGAGAGCCCAGGTGGCGTTCGAGTGTGACGAGGACAAGGATGAGCGAGAGACTCCACCGCGGGAAGGGAATCTGAAGCGCTACCCCACGCCGTACCCCGACGAGCTGAAGAACATGGTGAAGACGGCGCAGTCCGTGGCGCACCGGCTGAAGGAGGATGAGTCAGGAGACGAGTTGGCCGGCGAGAGGAACCACATCGGAGTGCAGAGCGTGGGAGTGAAGGTGATTGAGACTCCGTGTGCCAATGGCAAAGCGCTGGAGCTGGAGTCCAAAACCACAGTGAACAGCATCCAGAACAGCACCCCACCCGAGCCAAGAGACGTTCCAGATAACCAGGATCCTGAGAGAGTTCCTCTGAAGACCTCAGATGGACCCAGAGCCATGGTCAACCATGAGGATACacttgagGACTCGGAGGAGCTGTCGTCTGAGGAAGAGGAGATGAAGATCGCAGAGATGAGACCGCCTCTCATCGAGATCTCCATCAACCAGCCCAAAGTAGTGGCCCTCAGCAAGGACAAAAAAGATGATAATAAAGATGCTGACTCTCTGCTGGACGAGACGGTGGCTAACAGTAACCAGAACAACAGTAACTGCTCCTCACCCTCTCGCATGTCTGACTCCGTGTCCCTGACCACCGACAGCAGCCAGGACAACTCACTGTGCACTCCTGAGAGAGAGGCCAAGATGCCCCTGGTACCCAAGAACAGACAAGAGGATGAGAACCTGAACCAGCTGAAGGAGACCGTTCCGCTGCTGCAGAACTGCAACGGCTCCGAGACGTCCCTGCAGACCGTCCTGAAGACCCAGCGCAGCTTCGAGAGCAAAGCTGGCAGGATGGCTGAGTATGATCTGTCTATGGAGGAGCGCTTAGCGGTCATCGAGAAGGGAATCAACAACGGCATGGCCGACCAGTACAGCAAGTGGGATCAGATCAACATGAACGTGTCTAAATTTCCTCCGGACAACAGAGTGGTGTACGACGACCTGGAGAAGACCAAGAGCAGCCTGGGGGAGCCTGGacttagcagcagcagcagcagcaacaacaacaacaccagCGCTCAGTCACTGGAGAATCTGGAGAACGGGAACCAGAACGGGAAGATGCAGCAGGCTGGGGAGCTGCATTTTAATGGGCGGATTGAGGAAACCCCAGTGAGGTATGAAGTTGTGAGGACGGCCTCGGCTGGAGTCACGGCGTCCAGTGATATGTCTCTGTCCCGCAGCACGGAGGAACTGTCACCGGAGAAAAGACGGCCTCCTCCGGTGATGAAGGCTCAGAGCATCAGCAATATGGAGGCTGGTGGGATGAAGCTGTACTCTATAGAGGGCGAGAGTCCTCCGTATGAAGCGgtagcggcagcagcagcagcgaggGCCTCTGGTGCTCAGGGTCAGAGCATCGTTCGTTCCAAATCAGCATCTCTCCTGAATGACCAGCAACTACAGGTTTATCCTGGATCCTCAGCATCATCTTCTGACCTCCTGTCCAGCTCTAAACCTCCAACCAGCATGGCCCGCTATCCTGCAGGCCCTCCACCCCAGTATAACGTCCAGTACACCAGCAGCACTGTGCCTAAGGACAATCTCTGGGGCCAGCGCACCCCCGTCCCCCCAGACCAGGCCTACCTCCCTCCACAGCATTCGCTCGCCAACACCAACTACTCCAATCGCAACAACGCCCCACCCTACCCCCACCAGCCCCAGCCCACCCGCGGCCCAGCGAAGGCCCCAGACATGTGGGCCAAAGAGCGCGTTCTGCCCCCCGGGAGCCAGCGAGGAACCCTGCAGCGGCAGAGCAGCACCTCCTCCAACGCCTCCATGGTCATGCAGGACCCTCGCCGCATGCCGGGCCCCGAGAGCGACTACCTAACCTACAGGGACATTCACACCATGGGCCGCGGACCCCCACACATGAGCCTCCAGAGGCCCCTCTCGGCACGCACCTACAGCATGGACGAGCCCGGAGCCCCCCGGCCGCAGAGCGCGCGCCCCCCCGCCCACGAGGTGCCCGAGAGGACCATGTCCGTCAGCGACTTCAACTACCAGCAGCACGGCAGCCCCACCAAGAGACCCAACATGAGAGTCAAGTCTGAGCACTCCCTGCTGGACGGACCTCCGGGCGGAGGAGGCAGAGTACCGGCAGACTGGAGAGACCAGGTGATGAGACACATCGAGGCAAAGAAGATGGAGAAGATGACTGCCCTGTCTCGGTCTTTGGCCACGCTGTATGGCAGCCAGGGCTCTCTGGCCTTTAGCACTCTAGATGGACGACAGTTTGGAGCCCACGGGCCCAGC

Function

symbol description
erbin Predicted to enable ErbB-2 class receptor binding activity. Predicted to be involved in several processes, including establishment or maintenance of epithelial cell apical/basal polarity; receptor clustering; and receptor localization to synapse. Predicted to act upstream of or within negative regulation of NF-kappaB transcription factor activity and signal transduction. Predicted to be active in basolateral plasma membrane and cell junction. Is expressed in intestine. Orthologous to human ERBIN (erbb2 interacting protein).
erbb2ip erbb2-interacting protein

NR:

description
PREDICTED: protein LAP2 isoform X1

GO: NA

KEGG:

id description
K12796 ERBIN, ERBB2IP; erbb2-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681204.1 True 3666 mRNA 0.57 21 19594101 19651418

Neighbor

gene id symbol gene type direction distance location
nln nln,LOC107705053,LOC107667266,LOC107548669 coding upstream 72028 19503557 ~ 19522073 (+)
trappc13 trappc13,LOC107667267 coding upstream 118924 19459956 ~ 19475177 (+)
ppwd1 ppwd1 coding upstream 148443 19432487 ~ 19445658 (+)
cwc27 cwc27,LOC102784682 coding upstream 268700 19261204 ~ 19325401 (+)
fam159b NA coding upstream 339294 19252744 ~ 19254807 (+)
LOC103023409 co-prmt,LOC108428880 coding downstream 245319 19896737 ~ 19918977 (+)
pum3 pum3,k0020,LOC107705054,LOC107742987 coding downstream 268459 19919877 ~ 19932820 (+)
LOC103030097 NA coding downstream 497840 20149258 ~ 20150118 (+)
LOC103027562 NA coding downstream 501043 20152461 ~ 20155315 (+)
smad2 smad2,LOC107743055,LOC107653131 coding downstream 578109 20229527 ~ 20257745 (+)
LOC111195062 NA non-coding upstream 43081 19526927 ~ 19551020 (+)
G177506 NA non-coding upstream 99727 19494175 ~ 19494374 (+)
G177485 NA non-coding upstream 114259 19411626 ~ 19479842 (+)
G177479 NA non-coding upstream 192420 19397948 ~ 19401681 (+)
G177472 NA non-coding upstream 235352 19353968 ~ 19358749 (+)
G177819 NA non-coding downstream 87962 19739380 ~ 19739598 (+)
G177822 NA non-coding downstream 90206 19741624 ~ 19741851 (+)
G177826 tjp2 non-coding downstream 124422 19775840 ~ 19779536 (+)
G177830 NA non-coding downstream 143726 19795144 ~ 19833110 (+)
G177833 NA non-coding downstream 166815 19818233 ~ 19818710 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 1035657 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 1263612 18324873 ~ 18330489 (+)
G177219 NA other upstream 1367968 18224273 ~ 18226133 (+)
xpo7 xpo7,LOC107678024,LOC107586117 other upstream 1419583 18138712 ~ 18174518 (+)
G176882 inpp5j other upstream 2547112 17042835 ~ 17046989 (+)
LOC111194983 NA other downstream 68883 19720301 ~ 19722560 (+)
LOC103042206 LOC108428882 other downstream 99524 19750942 ~ 19775791 (+)
LOC103043854 NA other downstream 437820 20089238 ~ 20096711 (+)
G177950 NA other downstream 487404 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 744959 20396377 ~ 20399165 (+)

Expression


Co-expression Network