LOC103030413


Basic Information

Item Value
gene id LOC103030413
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20130604 ~ 20142570 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681227.1
AATTTCTTCCTCTCATCACTGACAGTTTCCTCCtctatcagcagcagcagccggcCGTGGAGTTACGAGCTTTATCCAGCAGCACGAGAGGGTAAAATGAGGGCCTGTGGTTCAGCAGTGAGCTTCTCTGTTGTTCTGATAGCAGgTTTGATGATCAGTAGGACATGTGGGGCTGAAACTGTGAACCCGAAATCCACACCATCgccatcttcatcatcttcgCCATCTTCCACACCAACTGCATCATTTACAACACCACTAAAACCAGCTTCTCCTGACAACTCATCTACAGTAACTTCTTCACCGAAGAGAAATGAATCTGAAACCAACTCCACAACTGCGGCCTTCAAACCAACATCTGCTTCCTCCTCCTCAAACACCTCAACTACAACGCTAGCACCTACAACGGCCAGTGCCATCCCCAAGACTAGTTCACAGACAACCGGAAGTACCACCTTAAACGCATCAAACAATGGCTccacagcaacaacacaatcaAACGTGACAACTGCTGTAACATCTGTAAATCAAACCACATCAAACTATTCATCTCCACAGACTGGAAATATGACAACAGCAGGACCTGCAGCAGTGAACTCCACAACATCTTTCTCTAATTTAACTACAAACAACACAGGTTCCATTACTGAAAGCCCTAAAATCTCAACTACAACTCAGCCCTCCACTTCAGCCGTTAAACAGACAACAGCCAAGCTGGTTACAAAAGCGAAGAAGGTTTTATTGACTACAACATCACAGCACGACAAATCAATACATCACACTGAAGGAGATCTTCCTGAAGCTCTGAGTTCAGCGAGTGTCGCAGCCATAGTCATCGGGTTCATCCTCTTTGTGATCATTATATTCGGAGGAGcttattatttcaaaatgagGCGACCTTCTTACGGCCGTCTGATGGACGACACTGAGTACGGATCTGTGGGAAACATCCTCAACCCCATGTTTGAAGGCTAAGTGAAGGAGTGAAGAACTTTCAGCTGCTCCAGTATTTCAGATgtcagtaggcctgtcacgataacctcatttgttttaatgatgtattgtcccagaaattatagcaataaaaaatattattctaatttaaatGTCACTGATagaatgataatataatagcataataatgcagttacacATTAATTTTAGTAATCAGTTTTTGAAGTAATTACTGTGACAGGCCTTGTGACAGAATTTTGACTGTTATTTGCAGTTTTATTGAAGACTCTGGTTAGATTGGGAAGATGCAGAGAGAAACCTCATGATCAGTGCTGTCTTCTGTTTTACCAGTGAATGTGTAATTGTCTGATATAGTCCCGAACCAGGGGGAATGtgaagtgtgatttttttttttttagagttaatATTTTCTTAAGGTTAATATGCTCTTAAGATTGTTCAGGTTTTACATATTagacattaaaatgtaaaaagtaaattcatgtatatttttattaaaatgttcttaatgtcattttattgttacattttcatttatcaAATCCAATCATTTGCAGTTTTAAAAGTAGTtacactttaataataaacaagctTATTTGGGGTTGAAACAAATGTTTACTTGCTGTGActgaaatagataaatagatttttatgtatgtttcagAGTACTGTTTATTACACTGTCCGTTTTTATGTGTTCGAATCGTAGTGAAATTCAGATGTGATTTTTGATTTTAGATGGTTttgatttataataaacagtgtAGCTCTCTACGTGAGCTGAAATTAGACCATAA

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0042110 T cell activation biological_process
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0030217 T cell differentiation biological_process
GO:0046649 lymphocyte activation biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0045321 leukocyte activation biological_process

KEGG:

id description
ko03050 Proteasome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681227.1 True 1772 mRNA 0.39 4 20130604 20142570

Neighbor

gene id symbol gene type direction distance location
LOC103028513 NA coding downstream 21443 20106939 ~ 20109161 (-)
sh3bp2 sh3bp2 coding downstream 96665 19994322 ~ 20033939 (-)
vldlr vldlr,LOC107548665,LOC107705052,LOC107558669 coding downstream 145394 19945770 ~ 19985210 (-)
kcnv2 kcnv2,kcnv2a,LOC108428855,LOC107558705,LOC107667263,LOC107726563 coding downstream 187841 19938695 ~ 19942763 (-)
LOC103023098 LOC108428883,LOC107705047,LOC107667273,LOC107726562,LOC107558698 coding downstream 266722 19835632 ~ 19863882 (-)
LOC111195065 NA coding upstream 15255 20157825 ~ 20163900 (-)
LOC103029774 NA coding upstream 26206 20168776 ~ 20218194 (-)
LOC103029139 NA coding upstream 76432 20219002 ~ 20228294 (-)
katnal2 katnal2,LOC107573073,LOC102797751,LOC104955398 coding upstream 265791 20408361 ~ 20420818 (-)
sigmar1 sigmar1,LOC107573076,LOC107653128 coding upstream 278780 20421350 ~ 20424770 (-)
G177967 NA non-coding downstream 11443 20115674 ~ 20119161 (-)
G177910 NA non-coding downstream 134823 19990445 ~ 19995781 (-)
G177911 NA non-coding downstream 238828 19891534 ~ 19891776 (-)
G177902 NA non-coding downstream 262704 19865415 ~ 19867900 (-)
G177821 NA non-coding downstream 390049 19740206 ~ 19740555 (-)
G178014 smad2,LOC107743055,LOC107653131,LOC101470473,LOC101159109 non-coding upstream 93121 20235691 ~ 20257726 (-)
G178030 NA non-coding upstream 144460 20287030 ~ 20287342 (-)
G178036 NA non-coding upstream 188647 20331217 ~ 20332128 (-)
G178069 NA non-coding upstream 253813 20396383 ~ 20399146 (-)
G178086 NA non-coding upstream 437134 20579704 ~ 20581712 (-)
LOC111194984 sh2d4a other downstream 391291 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 1002481 19119786 ~ 19128123 (-)
G177704 NA other downstream 1038458 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 1196004 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 1511992 18614892 ~ 18618612 (-)
G178173 NA other upstream 1148952 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 1790949 21933519 ~ 21933831 (-)
G178426 NA other upstream 2312927 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 2358748 22501318 ~ 22509783 (-)
G178450 NA other upstream 2529562 22672132 ~ 22672683 (-)

Expression


Co-expression Network