katnal2 (katnal2,LOC107573073,LOC102797751,LOC104955398)


Basic Information

Item Value
gene id katnal2
gene name katnal2,LOC107573073,LOC102797751,LOC104955398
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 20408361 ~ 20420818 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681239.1
ttggatCTGACTCTGGGTCAGGTTTGCCAGCAGAGGGGACCAATGACAGAAGTGCTGGGACACAGGATCATCTGCCTGGAACAACACTAGTGTTAGTTGGCTGGCaacttgtgtgtgtgagagagagagtgagtgtgagagagagagtgtgtgtgtgtgtgtgtgtggctgttgaGTTGCAGCAGCTCCACACAGCGAGCTACAGCATGGAATTGTCATATCAAGCCATAAAAACTGCAAACCAGGCCAGAGAAGCGGATGAATTGAGAACagaaacaagaagaagaaacttGCTTGTGttaatttatcattatttgatGGAGGAAGgGTATATGGACGCTGCTAGCTGCCTGGAGCAGGACACTAATTTTGGATTGCGGCGTTTTGAAGTGTGTGACAATATTGACTTGGACACTATTCTAATGGAGTatgaaagttattattttatcaaatttcAGAAATATCCCAAACTAACAAAGAAACTGCCAGAACAAGGGGAGACCAGAGCAGTGAGAAGCTGTGGTAAAAAGAGGACCCCATGCACAACCCAGACACTGCCAAGAATCGCCTGCGTCCAGCGGCCCCAGTCCAGGAACAGTATTAAAAAGCCAGACTCTAAAGCAGCAGTGAAAGACTGCAGTAAATCTAACAGCTTTCAGGAGAACGGAGGAGGGTACGTGCGAGAGAGGAGCGGGTTTGGCCTGAATGTGTCTCCCGTTATCAGGAATGGAGGTGGTGAGGGGATGCAGAGGAAGGGTCCACAGTTTGACTACAGGTGTCTTTTTCAGGACACAGTCAAGGGAGCAGTGCATGATACTAATGCAAATGGATTTACCTACAATCTAGATCCTACGGAGCGGCTGCTGAAACCCATTAGCTCCTTCTATTGGATGGATAGTGAAATGAGAGAGCTGGCAGCTGTGATTAGCAGGGATATCTATTTACACAACCCCAACGTGCGCTGGGACGACATTATAGGTCTGGAGGCCGCCAAGCGATTAGTCAAAGAGGCTGTCGTCTACCCCATTAAGtATCCTCAGCTCTTTACAGGCATTCTCTCTCCGTGGAAGGGTTTACTGCTCTACGGACCCCCAGGCACAGGCAAGACAATGCTGGCGAAAGCTGTAGCCACAGAGTGCAACACAACGTTCTTTAACATCTCTGCCTCCAGTATTGTCAGCAAGTGGAGAGGAGACTCTGAGAAGCTGGTTCGGGTTTTGTTTGAGCTGGCCAGATACCATGCCCCATCCACCATCTTTCTGGATGAGCTGGAGTCAGTGATGAGCCAGAGAGGTGTTGGACAAGGAGGTGAACATGAAGGCAGCAGGAGAATGAagactgagctgctggttcagATGGACGGACTGGCACGATCTAAAGATCTGGTGTTTGTGTTGGCTGCCTCAAACCTACCCTGGGAGCTGGACCACGCCATGCTGAGAAGACTGGAGAAGAGGATACTAGTGGGTCTTCCCTCCGACCCAGCCAGAAAAGCAATGATCAATCACTGGCTTCCTCCAGTCAGTAACAACGGTGGAATAGAACTTCGAACTGAGCTAGCCTATGACATTCTTGCCCAGGAAACAGAGGGGTACTCCGGCTCAGATATCAGACTCGTGTGTAAGGAAGCGGCGATGAGGCCTGTCCGGAAGATTTTTGACGCTCTGGAGAATCACAGCGAGGGTCACTGCGACATGTCGTTTATTGAGCTAGAAACGGTGACCACAGCAGATTTCCTGGAGGTGATCGCTCACACCAAACCATCAGCCAGAAACCTGACGGACAGATTCTCGGCCTGGGAGAGGGAGTACGAATCTGTCTGAGCTTACACCATCCTGAACTACACTTATCACACTACAGTTTTTACTGCACACCATGCAAGTTCTTCTCCATGTGATTCATCCATCCTTAGAAATGTTTTCAGTAGCATCATCACAGGCTGTAAACATAACAAACACtgtccaaaaaatataaaaataaaccctttttccattttta
>XM_022681240.1
ggatCTGACTCTGGGTCAGGTTTGCCAGCAGAGGGGACCAATGACAGAAGTGCTGGGACACAGGATCATCTGCCTGGAACAACACTAGTGTTAGTTGGCTGGCaacttgtgtgtgtgagagagagagtgagtgtgagagagagagtgtgtgtgtgtgtgtgtgtggctgttgaGTTGCAGCAGCTCCACACAGCGAGCTACAGCATGGAATTGTCATATCAAGCCATAAAAACTGCAAACCAGGCCAGAGAAGCGGATGAATTGAGAACagaaacaagaagaagaaacttGCTTGTGttaatttatcattatttgatGGAGGAAGgGTATATGGACGCTGCTAGCTGCCTGGAGCAGGACACTAATTTTGGATTGCGGCGTTTTGAAGTGTGTGACAATATTGACTTGGACACTATTCTAATGGAGTatgaaagttattattttatcaaatttcAGAAATATCCCAAACTAACAAAGAAACTGCCAGAACAAGGGGAGACCAGAGCAGTGAGAAGCTGTGGTAAAAAGAGGACCCCATGCACAACCCAGACACTGCCAAGAATCGCCTGCGTCCAGCGGCCCCAGTCCAGGAACAGTATTAAAAAGCCAGACTCTAAAGCAGCAGTGAAAGACTGCAGTAAATCTAACAGCTTTCAGGAGAACGGAGGAGGGTACGTGCGAGAGAGGAGCGGGTTTGGCCTGAATGTGTCTCCCGTTATCAGGAATGGAGGTGGTGAGGGGATGCAGAGGAAGGACACAGTCAAGGGAGCAGTGCATGATACTAATGCAAATGGATTTACCTACAATCTAGATCCTACGGAGCGGCTGCTGAAACCCATTAGCTCCTTCTATTGGATGGATAGTGAAATGAGAGAGCTGGCAGCTGTGATTAGCAGGGATATCTATTTACACAACCCCAACGTGCGCTGGGACGACATTATAGGTCTGGAGGCCGCCAAGCGATTAGTCAAAGAGGCTGTCGTCTACCCCATTAAGtATCCTCAGCTCTTTACAGGCATTCTCTCTCCGTGGAAGGGTTTACTGCTCTACGGACCCCCAGGCACAGGCAAGACAATGCTGGCGAAAGCTGTAGCCACAGAGTGCAACACAACGTTCTTTAACATCTCTGCCTCCAGTATTGTCAGCAAGTGGAGAGGAGACTCTGAGAAGCTGGTTCGGGTTTTGTTTGAGCTGGCCAGATACCATGCCCCATCCACCATCTTTCTGGATGAGCTGGAGTCAGTGATGAGCCAGAGAGGTGTTGGACAAGGAGGTGAACATGAAGGCAGCAGGAGAATGAagactgagctgctggttcagATGGACGGACTGGCACGATCTAAAGATCTGGTGTTTGTGTTGGCTGCCTCAAACCTACCCTGGGAGCTGGACCACGCCATGCTGAGAAGACTGGAGAAGAGGATACTAGTGGGTCTTCCCTCCGACCCAGCCAGAAAAGCAATGATCAATCACTGGCTTCCTCCAGTCAGTAACAACGGTGGAATAGAACTTCGAACTGAGCTAGCCTATGACATTCTTGCCCAGGAAACAGAGGGGTACTCCGGCTCAGATATCAGACTCGTGTGTAAGGAAGCGGCGATGAGGCCTGTCCGGAAGATTTTTGACGCTCTGGAGAATCACAGCGAGGGTCACTGCGACATGTCGTTTATTGAGCTAGAAACGGTGACCACAGCAGATTTCCTGGAGGTGATCGCTCACACCAAACCATCAGCCAGAAACCTGACGGACAGATTCTCGGCCTGGGAGAGGGAGTACGAATCTGTCTGAGCTTACACCATCCTGAACTACACTTATCACACTACAGTTTTTACTGCACACCATGCAAGTTCTTCTCCATGTGATTCATCCATCCTTAGAAATGTTTTCAGTAGCATCATCACAGGCTGTAAACATAACAAACACtgtccaaaaaatataaaaataaaccctttttccattttta

Function

symbol description
katnal2 Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Predicted to be involved in cytoplasmic microtubule organization. Predicted to be located in cytoplasm and microtubule. Predicted to be active in nucleus. Orthologous to human KATNAL2 (katanin catalytic subunit A1 like 2).

NR:

description
LOW QUALITY PROTEIN: katanin p60 ATPase-containing subunit A-like 2

GO: NA

KEGG:

id description
K07767 KATNA1; katanin p60 ATPase-containing subunit A1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681239.1 True 1998 mRNA 0.48 16 20408361 20420818
XM_022681240.1 False 1963 mRNA 0.48 16 20408361 20420816

Neighbor

gene id symbol gene type direction distance location
LOC103029139 NA coding downstream 180067 20219002 ~ 20228294 (-)
LOC103029774 NA coding downstream 190167 20168776 ~ 20218194 (-)
LOC111195065 NA coding downstream 244461 20157825 ~ 20163900 (-)
LOC103030413 NA coding downstream 265791 20130604 ~ 20142570 (-)
LOC103028513 NA coding downstream 299200 20106939 ~ 20109161 (-)
sigmar1 sigmar1,LOC107573076,LOC107653128 coding upstream 532 20421350 ~ 20424770 (-)
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107750222,LOC107756535,LOC107554236 coding upstream 853702 21274520 ~ 21284697 (-)
rassf6 rassf6 coding upstream 876566 21297384 ~ 21312937 (-)
LOC103045065 lpar1,LOC107554848,LOC107723319 coding upstream 968409 21389227 ~ 21423245 (-)
epha5 epha5,LOC108428864,LOC107702602 coding upstream 1124399 21545217 ~ 21665726 (-)
G178069 NA non-coding downstream 9215 20396383 ~ 20399146 (-)
G178036 NA non-coding downstream 76233 20331217 ~ 20332128 (-)
G178030 NA non-coding downstream 121019 20287030 ~ 20287342 (-)
G178014 smad2,LOC107743055,LOC107653131,LOC101470473,LOC101159109 non-coding downstream 150635 20235691 ~ 20257726 (-)
G177967 NA non-coding downstream 289200 20115674 ~ 20119161 (-)
G178086 NA non-coding upstream 158886 20579704 ~ 20581712 (-)
G178090 NA non-coding upstream 194984 20615802 ~ 20616011 (-)
G178096 NA non-coding upstream 296935 20717753 ~ 20718065 (-)
G178134 NA non-coding upstream 421229 20842047 ~ 20842374 (-)
G178157 NA non-coding upstream 835831 21256649 ~ 21265014 (-)
LOC111194984 sh2d4a other downstream 669048 19738649 ~ 19739313 (-)
LOC103035567 LOC103035567,LOC108425166 other downstream 1280238 19119786 ~ 19128123 (-)
G177704 NA other downstream 1316215 19091146 ~ 19092146 (-)
LOC103029522 LOC103029522,LOC107746207,LOC108440152,LOC107689072,LOC107658587,LOC107583405,LOC107758669,LOC106564675,LOC105890914 other downstream 1473761 18887028 ~ 18934600 (-)
LOC111195059 NA other downstream 1789749 18614892 ~ 18618612 (-)
G178173 NA other upstream 870704 21291522 ~ 21295833 (-)
G178267 grin3a,LOC107710005,LOC107750958 other upstream 1512701 21933519 ~ 21933831 (-)
G178426 NA other upstream 2034679 22455497 ~ 22456779 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other upstream 2080500 22501318 ~ 22509783 (-)
G178450 NA other upstream 2251314 22672132 ~ 22672683 (-)

Expression


Co-expression Network