ddx4 (ddx4,LOC107740783,LOC107670045,LOC107715859,LOC107665473)


Basic Information

Item Value
gene id ddx4
gene name ddx4,LOC107740783,LOC107670045,LOC107715859,LOC107665473
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22899476 ~ 22907374 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681259.1
ctctcttttttccctctttccaTCAAACCGCTCTTCACCTGCGGCCGTGCTGGAGCCTCTCTTCGCCCCCAAGGACAAGATTTTTGAAACAGCTTAATTGCGAGGCTGCGTGtggtaaattaaaatCTTACATCTCCTGTGGTCAATTATGGACGACTGGGAGGAAGAAGAAAAGGGGCCTGTTGTGAACAACTCAAGTTTTGgAAATTCAGGGAGCTCATGGAAGAGTGGAGGTCAGCAGAACGGCTTCAAAAGCAATGACACAGAGGGAAGCTCTTGGAAAAAGGGCAGTGGTGAATTTGGGCTCCGAGGTGGTACAAGAGGTCGTGGCTCTAGAGGCCGTGGTGGAGGGTTCGGTAGCTTCAGTTCAGAAACGGATGAAAATGGCAACAATGAAGACGATGGAGGCAAATCCTGGAACAGTGGTGGTGGGGAGAGTGGTGGATTCAGGGGAAGAGGTGGCAGAGGGCGAGGATCGAGAGGCAGGGGAGGATTCAGGAATTTTAACAGCTCtgAGGCTGATGAAAATGGCAATGATGAAGGTTTCAAAAGTAGTTTTGGAGGCAGAGGAGGTCGCGGGGGCAGAGAGGGTCGTGGAGGTTTTGGACGAGGTGGTGGAGGACAAGGAGGTGGAGGTTACAGGGGAGGTGATGAGGAGGTGTTTTCCAAGGGCTCAGTGACTGGGGAAGAAGGTGGTGCTGAAGTCAGTGCAGGACCTAAAGTGGTTTATgtacctcctcctccaccagagGAGGAGAGCTCTATATTTGCCCACTATGAGACTGGCATAAATTTTGACAAGTATGATGACATTCTTGTGGATGTGAGTGGGAGCAATCCTCCGAAGGCCATCATGACATTTGAGGAAGCAGGCCTTTGTGAGACACTAAGCAGAAATGTTGCGAAGTCAGGATATGTAAAGCCCACTCCTGTTCAAAAATATGGCATTCCCATAATATCGGCCAAACGAGATCTCATGGCTTGTGCTCAGACTGGATCAGGGAAGACGGCTGCCTTCTTGCTTCCCATTCTTCAGCAGCTGATGGCTGATGGTGTGGCTGCCAGCAAGTTCAGTGAGGTGCAGGAACCTGAGGCAATCATTGTGGCCCCCACCAGAGAACTCATCAATCAGATATATTTGGAGGCCCGCAAGTTTGCATATGGGACCTGTGTGCGTCCTGTCGTGGTTTATGGAGGTATAAACACTGGATACACAATACGAGAGGTGTTGAAGGGTTGCAATGTGTTGTGTGGGACCCCTGGAAGATTGCTGGACATTATTGGTCGTGGAAAGGTTGGACTAAGTAAACTTCGTTATTTGGTGCTGGATGAGGCTGACCGCATGCTTGATATGGGCTTTGAGCCAGACATGCGAAAACTGGTGAGCTCTCCAGGCATGCCTGCTAAGGAAGAAAGGCAAACCCTCATGTTCAGTGCCACCTATCCAGAGGATATTCAGAGGCTGGCAGCAGACTTCCTAAAGGTGGATTATTTGTTTCTTGCTGTGGGTGTGGTGGGAGGAGCGTGCAGTGATGTGGAACAGCATATCATTCAGGTGGATCAGTACTCCAAGAGGGAACAGCTACTGGAATTGCTAAAGACCACAGGAACTGAGCGAACAATGGTTTTTGTCGAAACCAAAAGAAGTGCAGATTTCATTGCAACATTTCTTTGCCAAGAGAAGGTTCCAACTACAAGCATTCATGGAGACCGGGAACAGCGAGAGCGTGAGAAAGCTCTCAGTGACTTCCGCACAGGCCAGTGCCCTGTGCTTGTTGCTACATCTGTTGCTGCTAGAGGCCTGGACATTGAGCATGTCCAGCATGTAGTAAACTTTGACCTGCCTAATAACATTGAGGAGTATGTTCACCGCATTGGAAGAACAGGCCGCTGTGGAAACACTGGGAGAGCGGTTTCCTTCTTTTACCCAGAGTCTGATACTCCACTGGCACGGTCTCTGGTGAAAGTTCTCACAgggGCCCAGCAGGAAGTCCCACCATGGCTGGAGGAAATTGCGTTTAGTGCCCATGGCACAACAGGATTTAACCCACGTGGTAAAGTGTTTGCTTCTACAGACACTCGCAAGGGTGGCTCCTTCCAGAAAAACCAGgcagcagcaccaccaccagCTGCTCAGAGCACCGGTGCAGCAgcagatgatgatgaagaatgGGAGTAGATTCACACATCCCCTGCTtcgttttatgtttttcttttgtagCAAAATAATCCTGTGTTcagcttttatattatgttaatGGCTCCAAGTTAAAATGTGCAGAGAAGAGTACAAAGCTTTAGACAAAGATGCTCTAAGAAAAATTGCACTTGAAGATTGATTGGTGTAACTGGAGGTTTGGCTTCATATAAAGAGAATGTCTTGAGAATTAATCCAAGATGACCTGTTTGGCTAAGTGGCGTGTATGTGGGGATGAATCACTTTTGCtggtattttttgcacttaacCGTGTGTTTCGTTTGAAGAATAATGAGTGGAGTTCTAGCACTAGCAGCATCTGTTTCTAGTTGGGAAGTCAACATGTTGTGAATTTTCAGATacccaaaaacatttatttgtgcAAGTGTTGCTAAAGATTGCTTCTGCACTTTCAGCTGACTGAGCAGTTATTTGTGCCATGTTTCCTGTTTTACCTTTGTCGAAGATGGTACAGTTTTGTGAAATAAATTGGCCATTTACACAA

Function

symbol description
ddx4 Predicted to enable RNA binding activity and RNA helicase activity. Acts upstream of or within germ cell development; gonad development; and regulation of meiotic cell cycle. Located in P granule. Is expressed in several structures, including blastodisc; germ line cell; reproductive system; shield; and unfertilized egg. Orthologous to human DDX4 (DEAD-box helicase 4).

NR:

description
probable ATP-dependent RNA helicase DDX4 isoform X2

GO: NA

KEGG:

id description
K13982 DDX4, VASA; probable ATP-dependent RNA helicase DDX4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681259.1 True 2702 mRNA 0.48 24 22899476 22907374

Neighbor

gene id symbol gene type direction distance location
LOC103040684 NA coding downstream 1931 22881124 ~ 22897545 (-)
map3k1 map3k1,LOC107558252,LOC107670047 coding downstream 135064 22696309 ~ 22764412 (-)
LOC103042817 hmgcs1,LOC108427280,LOC108277226,LOC107737058 coding downstream 205544 22679197 ~ 22693932 (-)
LOC103043437 tln1 coding downstream 227625 22581421 ~ 22671851 (-)
LOC103044350 tpm2,LOC103044350,LOC108427282,LOC108276716,LOC107670037,LOC107737084,LOC105894628,LOC106571564,LOC107394912,LOC103389160,LOC108242564,LOC107572193,LOC107715874,LOC107102752,LOC102218310 coding downstream 321045 22541964 ~ 22578431 (-)
nrg1 nrg1 coding upstream 349151 23256525 ~ 23403475 (-)
wrn NA coding upstream 503809 23411183 ~ 23453696 (-)
ubxn8 NA coding upstream 607878 23515252 ~ 23521636 (-)
LOC103038694 LOC108427265,LOC108277159 coding upstream 799327 23706701 ~ 24078366 (-)
apbb1 apbb1 coding upstream 1309798 24217172 ~ 24231664 (-)
G178505 NA non-coding downstream 19167 22870158 ~ 22880309 (-)
G178452 NA non-coding downstream 149397 22749513 ~ 22750079 (-)
G178436 NA non-coding downstream 351496 22511049 ~ 22547980 (-)
G178521 NA non-coding upstream 1418 22908792 ~ 22913269 (-)
G178528 NA non-coding upstream 22735 22930109 ~ 22930968 (-)
G178550 NA non-coding upstream 211334 23118708 ~ 23188801 (-)
LOC111195071 NA non-coding upstream 314180 23221554 ~ 23222498 (-)
G178575 NA non-coding upstream 347864 23255238 ~ 23255493 (-)
G178450 NA other downstream 226793 22672132 ~ 22672683 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 389693 22501318 ~ 22509783 (-)
G178426 NA other downstream 442697 22455497 ~ 22456779 (-)
G178267 grin3a,LOC107710005,LOC107750958 other downstream 965645 21933519 ~ 21933831 (-)
G178173 NA other downstream 1603643 21291522 ~ 21295833 (-)
LOC111195067 NA other upstream 28116 22935490 ~ 22941664 (-)
sh2d4a sh2d4a other upstream 37787 22945161 ~ 22957226 (-)
G178982 hint1,LOC107665476 other upstream 2223608 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 2295951 25203325 ~ 25207386 (-)
thsd1 thsd1 other upstream 2386301 25293675 ~ 25303083 (-)

Expression


Co-expression Network