LOC111195066


Basic Information

Item Value
gene id LOC111195066
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22519419 ~ 22528083 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681261.1
GTATAGAACGCGTGGCTGACCTGGTGACGTCACTGCAGACATCACTATATATACCTGCCTCATTTCACTTCTGCACtgacggagagagagacagagatagagacagagaacCGCAATGGATTTCGGTGACCAGCTGAGAAGCGTAGACGACATAATGGCAGACATTCGGGAGAGACTCCAGGACCCGAAGGACCAGCATGTCCTGCCGGTGAGGGAGGATGAtgcacagagagaggagagaggagagagcgaGTCGGAGGGAAGTGAAGACAGAGAGTCTGTGAGTGAAGAGGAGACAGATGATGaggaacagagagaggagaatgtGGGAGAAAGACAGGGAGAAATGGAGAACCAGAAACAAGAGCTTCTAGGGCTTGTCAAGTACTGGAAACAAGTTGCTTTAAACATTATGGAGCATAAGCATCAGAGCGAGAGGAAAGATCAGGAGAGATTACATGCAATGAGGAAGACGGTCCAGGAGGCTCAGAGGGAGGAGAATGTACTGCAGGAAAAAAGAGCCGAGATGGAGTATGAGAAAAAGCAGGCATTGGTGGAGCATAAGCATCAGAGCGAGAGGAAAGATCAGGAGAGATTACAGGCAATGAGGAAGACGGTCCAGGAGGCTCAGAGGGAGGAGAATGTACTGCAGGAAAAAAGAGCCGAGATGGAGTATGAGAAAAAGCAGGCATTGGTGGAGGTCGAACAGGTGAGCAGACAGCTGGAGCTGAGTTTAAAGGATAATATTAAGATGCTCTGTGAAAAAGAACAGCAAATTTTAATGCAGAGGGAGGAAATTAAAAAGGAGAAGAGCAAGAtcaggaaagagaaagaggccatcagacatgagagagagaaaaatgaaattATCCAGAGCTTCAGAGAGAAAATGGCAGAGAGAGACCTTGAGTTCCTTAAAAGGAGGCTGGAGAAAAGGGAGGGTGAAATGATAGAGGCTCTCGAAAAGGAGTGGAAAAATATTGCAATCGAGAGAAAGCTGGTTGAGGAGAAGAGAGAAGCCATAGAATTGAAGAAAAGGATGGAAGAGAAAGAACTGAGGAGACAGAGGAAGAAATCTCAAGACATTATTTCTGTAGTTAGAGAGGAGGTACTGCTACATCTGAAACAGGAACCAAAGTCTAGGACGTGGAGAAGCAGGCTGTTTTCTCCACACAAGAAAATGAGGGACGTCTCATCAAGAATTAGTGCCTGGTTCTCTAGAGGCCTCTCCAGTGAgcacttctctctctcagacctAAGAGAAActgagagggagatagagagactAAAAGAGAGGACAGAGCAAAATGAGAAAGATATGTTACAGGCTTTAGGTAGGGAATCGGAAAAAACTGAGTTCGAGAAAATGCAGACCAAGGACGAGAGGGAAGCCctggaagaaaagaaaaagaaggctGAGAAAAAGCTTAGGAAGCAGAGGAAGAAAGCTGAgcgagaggaggagagaaaggaaagagacCCTCTTGCTGGAAGTGATATCACAAGAGAAGACATAGCCAAGGCTATAGAGGAGATACTGCAGCAGAACAAGGCAGCTCAGAAGAAAGATGAACcagcaaagagagagacagggaggggTAGGCTGAAGAAGAAGCTGATTTCTGCATTCAAAAAGGCAAAAGCTGGCTTGAAGACTGCGGCCTTCTGGAGGGACTAAGGACTGTGTTTTCAGGGATCGGTACCTTTCTCCGTGGAGTCTGTTGCAGCATAAGCTCTTTCTTCAAGAAGATCTGTGAGaggttgtgctgtttttaaATGCTACTCCTTCAGCACTCCAGCTACTCCTTAAGA

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681261.1 True 1812 mRNA 0.46 2 22519419 22528083

Neighbor

gene id symbol gene type direction distance location
LOC103022635 mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437 coding upstream 3834 22509888 ~ 22515585 (+)
tmem150c tmem150c,LOC107558260 coding upstream 43114 22468437 ~ 22476305 (+)
sec31a sec31a coding upstream 65808 22421362 ~ 22453611 (+)
LOC103047607 LOC103047607 coding upstream 184876 22322720 ~ 22334543 (+)
grin3a grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214 coding upstream 554711 21932331 ~ 21964708 (+)
ankrd55 ankrd55,LOC107670032,LOC107737049,LOC107702571 coding downstream 311425 22839508 ~ 22863383 (+)
il6st NA coding downstream 337058 22865141 ~ 22880314 (+)
slc38a9 slc38a9,LOC107670042,LOC107564110,LOC107740785,LOC107566906,LOC107715861 coding downstream 380710 22908793 ~ 22928244 (+)
LOC111194992 NA coding downstream 436910 22964993 ~ 22966528 (+)
LOC111194985 NA coding downstream 442339 22970422 ~ 22973005 (+)
G178320 NA non-coding upstream 123222 22391198 ~ 22396197 (+)
G178310 NA non-coding upstream 132758 22339979 ~ 22386661 (+)
LOC111195069 NA non-coding upstream 137841 22380610 ~ 22381578 (+)
G178289 NA non-coding upstream 205125 22313170 ~ 22314294 (+)
G178282 NA non-coding upstream 416373 22102749 ~ 22103046 (+)
G178368 tln1 non-coding downstream 76912 22604995 ~ 22605572 (+)
G178381 tln1 non-coding downstream 101828 22629911 ~ 22671830 (+)
G178392 map3k1,LOC107670047 non-coding downstream 179665 22707748 ~ 22708401 (+)
G178394 map3k1 non-coding downstream 185654 22713737 ~ 22720806 (+)
G178472 NA non-coding downstream 402140 22930223 ~ 22930945 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 17260 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 27916 22486823 ~ 22491503 (+)
LOC103025565 scd5 other upstream 53690 22456319 ~ 22465729 (+)
LOC103046694 LOC108440723,LOC108277161 other upstream 204112 22127121 ~ 22315307 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 2120254 20396377 ~ 20399165 (+)
G178352 NA other downstream 16557 22544640 ~ 22546130 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other downstream 160918 22689001 ~ 22709557 (+)
G178485 NA other downstream 435364 22963447 ~ 22964989 (+)
LOC103032894 LOC108424565 other downstream 1919709 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 2716078 25244161 ~ 25257469 (+)

Expression


Co-expression Network