LOC103022635 (mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437)


Basic Information

Item Value
gene id LOC103022635
gene name mat2al,LOC108440739,LOC108276530,LOC107732036,LOC107653488,LOC107573852,LOC102202437
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 22509888 ~ 22515585 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681262.1
CTTACGCATATTCCGTAGAGTCTGTCCAGCAGCGCTGCGGAGGATTTCCAGCTGCTTCTCTATTCGAGCTTTTTTCTACAATCATCATGAACAGTACCGGCTACAGCAGATCAGGAAAAACCTTCCTGTTCACCTCGGAATCGGTCGGACAGGGACACTCTGATAAAATGTGTGACCAAATTAGTGATGCCGTTTTGGATGCATATCTTTCTCAAGACCCTGACGCAAAAGTGGCATGTGAGTGTGTGGCCAAGACAGGTATGATTCTGCTGTGTGGAGAGGTGACATCAAAAGCAGTGGTGGATCTTGAGAAAGTGGTCAGAGACACTGTGAAGGACATTGGATATGACGACTCATCCAAGGGGTTTGACTACAAGACCTGCAATGTGCTTGTGGCATTACAGCCACAGTGTGAGGAGATTACTGACTGTGTATTTGAAGGCAGAGATGAAGAGGACATTGGCGCTGGGGATCAGGGTTTCATGTTTGGCTATGCAACAGATGAAACGGATGAGTGCATGCCACTGACCATCCTCCTGGCCCATAAGCTCAATCACAAGATGAAAGAATTGTCAAAGAATGGGGAGTGTGCATGGATACTACCTGACTCTAAATCCCAgGTTACTGTGGAATACCGTGATAACATGGGAGTCATGGAGCCTATCCGAGTCCACACAGTAGTCATTTCAGTCCAGCATACACCTGACATCACACTGTCGGAAATACGGAAGAATCTGATGGAAAAAGTGGTGAAGACAGTCATTCCAGCAAAGTATCTGGATGACCGGACTATCTATCACCTGCTACCTAGTGGAAAGTTCCTTATAGGTGGTCCGCAGGGAGATGCCGGCCTTACTGGAAAAATCATTGTGGACACATATGGTGGCTGGGGAGGCCATGGGGGCGGGGCCTTCTCAGGTAAGGACTATTCCAAAGTGGACCGTTCTGGAGCCTATGCAGCCCGATGGGTGGCCAAATCCCTTGTCAAGGCCAAGCTGTGCAGAAGAGTGCTGGTACAGATCTCCTATGCCATTGGCATCAGCCACCCTTTGTCCATCTCTGTTTTTCATTATGGTACGTCAACAAGAGATGAAGATGAGCTTCTGGAAATCGTTCAGAAGAATTTTGACCTACGACCAGGGGTGATTGTCAAGTAA

Function

symbol description
mat2al Predicted to enable methionine adenosyltransferase activity. Predicted to be involved in S-adenosylmethionine biosynthetic process. Predicted to act upstream of or within one-carbon metabolic process. Predicted to be active in cytosol. Is expressed in anterior neural tube and optic cup. Orthologous to human MAT2A (methionine adenosyltransferase 2A).

NR:

description
PREDICTED: S-adenosylmethionine synthase-like isoform X2

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0006556 S-adenosylmethionine biosynthetic process biological_process
GO:0004478 methionine adenosyltransferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681262.1 True 1157 mRNA 0.48 9 22509888 22515585

Neighbor

gene id symbol gene type direction distance location
tmem150c tmem150c,LOC107558260 coding upstream 33583 22468437 ~ 22476305 (+)
sec31a sec31a coding upstream 56277 22421362 ~ 22453611 (+)
LOC103047607 LOC103047607 coding upstream 175345 22322720 ~ 22334543 (+)
grin3a grin3a,LOC107750958,LOC107710005,LOC107702562,LOC107554227,LOC104941214 coding upstream 545180 21932331 ~ 21964708 (+)
musk musk coding upstream 1140614 21326212 ~ 21369274 (+)
LOC111195066 NA coding downstream 3834 22519419 ~ 22528083 (+)
ankrd55 ankrd55,LOC107670032,LOC107737049,LOC107702571 coding downstream 323923 22839508 ~ 22863383 (+)
il6st NA coding downstream 349556 22865141 ~ 22880314 (+)
slc38a9 slc38a9,LOC107670042,LOC107564110,LOC107740785,LOC107566906,LOC107715861 coding downstream 393208 22908793 ~ 22928244 (+)
LOC111194992 NA coding downstream 449408 22964993 ~ 22966528 (+)
G178320 NA non-coding upstream 113691 22391198 ~ 22396197 (+)
G178310 NA non-coding upstream 123227 22339979 ~ 22386661 (+)
LOC111195069 NA non-coding upstream 128310 22380610 ~ 22381578 (+)
G178289 NA non-coding upstream 195594 22313170 ~ 22314294 (+)
G178282 NA non-coding upstream 406842 22102749 ~ 22103046 (+)
G178344 NA non-coding downstream 946 22516531 ~ 22524073 (+)
G178368 tln1 non-coding downstream 89410 22604995 ~ 22605572 (+)
G178381 tln1 non-coding downstream 114326 22629911 ~ 22671830 (+)
G178392 map3k1,LOC107670047 non-coding downstream 192163 22707748 ~ 22708401 (+)
G178394 map3k1 non-coding downstream 198152 22713737 ~ 22720806 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 7729 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 18385 22486823 ~ 22491503 (+)
LOC103025565 scd5 other upstream 44159 22456319 ~ 22465729 (+)
LOC103046694 LOC108440723,LOC108277161 other upstream 194581 22127121 ~ 22315307 (+)
ier3ip1 ier3ip1,LOC106633120 other upstream 2110723 20396377 ~ 20399165 (+)
G178352 NA other downstream 29055 22544640 ~ 22546130 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other downstream 173416 22689001 ~ 22709557 (+)
G178485 NA other downstream 447862 22963447 ~ 22964989 (+)
LOC103032894 LOC108424565 other downstream 1932207 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 2728576 25244161 ~ 25257469 (+)

Expression


Co-expression Network