LOC103037096 (LOC108410414,LOC108277158,LOC105901021,LOC106603263)


Basic Information

Item Value
gene id LOC103037096
gene name LOC108410414,LOC108277158,LOC105901021,LOC106603263
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 23541850 ~ 23690355 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681286.1
TGGCTCTCTGCTGCCTCATGGCGGAGCTACTGCAGCTGCGCAGCCTCGAGCTtggaggcagcagcagcacggcGCGTGCTCCTCCTGTAGACAGTGCACAGGCGCGCGCCTCTCCGCAGCTTTTGGACACCAGAGCGGATCGTTCCCCGTGCTGCGAGGActaatcattcattcattctttcgcGTTCTCTCCTTCCTCGCCGCGTGGATTTGTGCTTCTCCTGGAGGAAAgctgcatgtgcatgtgtgggTGCATGTGCACGGGGATGTCACGGAGCGCGCGGTGCTGAAATGTGGAGAGAAGCGCAGCGATCCCTCTCATCCAGCCGGCAGCGCGTGCTCGCTCTCTTAAGAATGACAACAAAACCGCGTGAACTGAGCCTCCCCCCGACTGTCAGACGCGTGCACGCGGCGTGCGCTGCACCGGCGGTGCTGTGAGGAAGGACGCTACTGTTCATTTttgctgttcatttttttcgctcgtttttatattttctgcgCGAGAGTTGCGGGACTTGGACCGCTGGAGAGAGTTCGCGCGCGCAGTGATGAGCGTTGCTGTGGCACCATGAAGCTCGTGCAGGTCATCGTTTTGTGTGGGTTTCTCAACGCTCACACCGACGCATCCCGCGTTCGTCAGGAGGACTACCCCCCTCGAATAGTGGAGCACCCCTCAGACCTGATCGTGTCGAAGGGCGAGCCGGCCACTCTGAACTGTAAGGCGGAGGGGCGGCCGTCCCCCACCGTAGAGTGGTATAAGGATGGCGAGCGCGTGGAGACGGACAGGGACAATCCCAGATCACACAGAATGCTGTTGCCCAGCGGGTCACTCTTCTTCCTGCGCATTGTTCACGGACGCCGCAGCAAGCCGGACGATGGCAGCTACGTATGTGTGGCCAGGAACTACCTGGGTGAAGCGGTCAGCCATAACGCCTCGCTGGAAGTGGCATtgTTGCGGGACGATTTCAGGCAGAATCCTCAGGATGTGGTTGTTGCAGTAGGTGAATCTGCCACACTGGAGTGCCAGCCTCCTCGGGGCCACCCTGAGCCCacaaccttctggaggaaagatAAAGCTCGTCTTGATCTCAAAGACGACAGGATTAGTATTCGGGGCGGAAAACTGACCATATCCAACACTAAAAAGAGTGATGGAGGAATGTATGTGTGCGTGGCAACCAACATGGTGGGGGAGAGGGAAAGCGAGATGGCTCAACTCTCCGTTTTTGAGCGACCCTCGTTCGTGCGCAGGCCTGTGAACCAGGTGGTGCTGGTAGATGAGAGCGTGGAGTTCAGGTGTCAGGTGGAAGGAGACCCCTCTCCATCGCTGCGCTGGAGGAAGGATGAGACGGAGATCCCCCGTGGCAGGTATGAGATGAAATACGAAAAAGATGACTTCATCTTAAGGATTAAGAAAGTATCTGCCGGAGACCAGGGAAGCTTTACGTGTGTGGCAGAGAATCGCGTGGGCAAAGTGGAGGCGTCAGCTACACTGACAGTCAGAGCTCGTCCTGTTGAGGCCCCCCAGTTTGTGGTGCGACCCCGGGACCAGATTGTGATGCAGGGACGCACCGCCATCTTTCCATGCGAGACCAAGGGAAACCCACAGCCCGCCGTGTTCTGGCAGAGAGAGGGCAGTCAGGATCTACTTTTCCCGAACCAACTTCCTCAGGCTGGAAGCCGTTTTTCGGTGGCGCCCAACGGCGATTTGACCATCTCCTCAGTCCAGCGCTCGGACGCGGGCTACTACATCTGCCAGGCTCTCACTGTAGCCGGCAGCATCCTGGCCAAGGCCCAGCTGGAGGTGTctgatgCTCTTAAGGACCGCCCACCACCCATCATTCAGCAGGGCCCGACCAATCAGACGGTGGCAGTGGGTGGCCTGGCTCTTCTTGGCTGCCGGGCGTCTGGAGACCCGGAACCCACCGTCACTTGGCTGAAGGATGGACTGAGTCTGCTGGGTAAAGAGCCTCAAATGTCCCTGCTGGAGCCTGGAAGTCTGCAGATTAAAAACACTAAGCTCTCGGACTCTGGCATGTATACATGCTTGGCAACAAGCTCCAGTGGAGAGACCTCATGGAGTGCCTTCCTTGATGTCAGAGAGTCAGCCGAGCTTATAGACCCCGTGTCCCACAATGCCACTGCTCTCCCGGGGCCCCCCTCCAAGCCAGAGGTCACAGATGTCACCAAGAGCAGCGTGTCTCTGTCATGGCGCCCAGGCCCCGAAGATGCCTCCCTTATTTCCTCCTATGTGATCGAGGCCTTTGGCCAGCTGGTGAGCAACAGCTGGCAGACTGTGGCCGACCATGTGAAGAGCACACAGTACACGGTCAAAGACCTACGCCCCAACACCGTCTACGTCTTCATCATCAGAGCTGTGAACACACAGGGGGTGGGAGACCCTAGCCCCATGTCTGAGCCTGTGCGCACCCAAGACATCAGCCCAGCAGTGCAGGGCATTGATCATCGGCAGGTGCAGAAGGAGCTGGGTGATGTAATCGTCAGCATGCACAACCCCGTGGTGCTCAGCTCCACTACTGTGCGGGTTACGTGGGCAGTTGAAAACCCATCCCAGTTCATTCAGGGCTACAGAGTTCTATACCGGCAGACTTCAGGACTACCTTCTCCAGGAGCTTGGCAAGTCCAGGACCTGAAGACTCCATCAGAGCGGGACATCAATCTACAGGAATTAAAAAAGGGCGTTGTTTATGAGATAAAAGTACGACCCTTCTTCAATGAATTCCAGGGAGCTGACAGCGAATCGATGACGGCGCGCACATTAGAAGaagCCCCCAGCGCCCCTCCCCAGCAAGTCACTGTGCTCACGGTGGGCAGCCAGAACAGCACCTCCATCAGCATCTCCTGGGACCCCCCACCCACAGACCACCAGAACGGCATCATCCAGGAGTACAAGATCTGGTGCCTGGGAAACGAAAGCCGCTTTCACGTGAATAAGACTGTGGATGCAGCGATCCGCTCAGTGGTGGTTGGAGGGCTTCAAGCTGGGGTGCAGTACCGCGTGGAGGTTGCAGCCGGCACTAGTGCAGGCCTGGGGGTGAAGAGCGAGCCACAGCCCATTGTGATTGGTGCAGAGTTACGGGATGTGATGACTGGGGATGAGGGAAACAGCAGCATCACTGATGTGGTAAAGCAGCCAGCTTTCATCGCCGGTCTGGGGGGAGCCTGCTGGATCGTACTGATGGGCTTCAGTGCTTGGCTGTACTGGAGGAGAAAGAAGAGGAAAGGTCTCAGCAACTATGCAGTGACGTTCCAGCGTGGAGACAGAGGCCTGATGGGAAGTGGAAGtcGTCCTGGCCTGCTGAAAGCCGGTGATCCTGGCTTCCCTTGGCTGGCCGACTCCTGGCCCTCCACCAGCTTGCCTGCCAACGGAGGCCTGGGCGCCTCAAAAGACCACAGCAACTTTGGACGCGGAGACGTGCTGCCGGCTGGGGCTGGCGAGAAGACGGGCACCATGCTGTCAGACGGTGCCATCTACAGCAGCATCGACTTCACAGGCAAGACGGGCTACAGCAGCCCGGCCCGAGGCAACCAGGCCACCCCCTACGCCACCACTCAGATCCTGCAGTCCAACAGCTTCCATGAGCTGGCCGTGGATCGGCCTGACCCCCGCTGGAAAGCCTCGCTGCGTGCCCAACAAGAAATGGCCAGTCTGGGCTACTCGCTTACTGACAGCAGATCCTGCGCCAACGGAGGAAAGAATGGTAAAAAGAAGAAATCCAAAGGCGgcagtaaaacagcaaaaccCAACGGCTCCTGCTGGGCCAACATACCCCTCCCTCCCCCACCAATGAACCCCTTACCAGGGACTGAAATGGACCACTATGCCCCAGACCGTCAAGCTGAAGGAGGGTATGAGAGTGACAGCTGGGGTCCACCCCTTCCTGTGCAGACCTACCTGCACCAGGGCATGGAGGACGAGCTAGAGGAGGAGGAGCGAGTGCCCACTCCACCTCTCCGCGGCGTGGCCTCCTCTCCATCAGCACTGCCCTATGGCCAGGGCTCTTCTGCCTCACTAGGCTCCTCCCACCACGAGGAAATGCAGTCCATGCTTCAAGCCCATTTGGACGAACTTACCCGTGCCTACCAGTATGAGGTGGCCAAGCAAGCATGgcatcTGAAAGGCAGCTCTCACAAACCCAAGACCCCTGTCCCACCAGTGGCCTATGTGTCCAGTACATTAGGATCAGACATTCTGACGGAAGGAGAGGATGAGGAGGGTGACAGCGAAGAGTACGAGTTATCTCGGAAGCTCTGTGGAATAGACTACCCCCCGGGTCGCAGCCTGGAATCCATAGAGGGAGCGATCACAGGACATGCCTATTCCCACCGAACCCAGCCGACCAGTCCCGGGTCGATAGATGGAGGGCTGCTGGGGACTCAGAGTCTGGGCCATCAGAGGGTAACACAGGCTCCTCACAAACATCGGGCCGAGACGCTGGCCACCGAGCCCCGCAGGAGAGACAACGCTGCAGATGGTCGAGCTCCTGCCTCAGAGCCTCTTCACAGTGTGGGTGCGCGGCTGCACACGTCCTGGGGATCGATGGGATCGGAGCCCCCCGAGGAGTGCATGGTGTCCACGCTGGAGCGGCAGCATTTGGCCCCCTGGAGCTCCAGAGGCACGCTGGGACGAGGCTCTCACCAAAGGTCCAATACAGAGCAGCAGGATTCTTCAGGCCGGGGGTCCGCCAGCATGGAGCCCAACTATGGACACCTATAGTGCCCTGTGTGCGAGAGATGCGCCAGACTACTCACTGCCCACCCGAATGAAAGCAAGGacacgagagagtgagagagagagagattttcatAGTTCACCCGTGCAATGCCTGAAGAGCTTCTCCCACCGGTCTTCTGTGAGGTGATCTTtacctcagagagagagagagagtgagggagaaacaCTGAACTCTAATCTGAAGCTAATGTACAGACACACATCTCACAGTGGTCTTTGACTTGCGATTTGCTTTTGTCTACCTTACGGCGAGACGTCACATGTCCCTCCCATTACGTGTCACACAGTGTACAtcacttgttaaaaaaaagaaaaagcaagaaagaaagcCTTTTTGTTTTGCTCGTTTTTGGAAAGAATTAATATGAAAAATCACAAGTATGTAAATCCAAATAAATATGAGGGATGTGTATtacttgtaaatattttttttttatttgatgttgcTTTGCTATGCAAaccaaaatcagatttttaggtTTGTCTCTTAAATGGTCTTTTTAACATTGTGAATGGATAAAAAATGTGGTATCacgatttctgtttttttgtttgttttcataaatgctctgaatatttgctaagttattataaataattgtttattttgcaCAAAACATTCTTTGGTGATAAGCACAAAATATCTTCAGCTCCCGCTGACGTGGAAACAGAAAAGATATGCTACAGATATGCTAGAGAGTCTGCACTGCAgcctaaaaataaagagatttagGACAGAAGCGTCCACAAATACAGATGTATTATTACTGGATTGTTGCGATGGGATTTCCGCTGGACTGATGGAACAGAATGATATTGAAAGCGTATAGTACTTACAAATGCTAAGAGAGCAGGTGTAATGGAATTGCCTGTCCCTGGTCATTTGAGCCTGCTTTAAGAGCAGAAAATGCTCCATCACAGTCCGTCTCGAATGTTTTGGGCtacaaataatattaaactatatGAAGAAGCCTTTTTCTCAAGGACTCAAGGAAggagatatactgtatattactgaGTGAAATGAGTGCTCTGCAGTGGAGTTGGGGACTGAGAAATGAATGACATGATGATAATGTCACAGCGGATCGTCCTCCGTGTTTCTGAGTGAAACCGTAGTGAAAGTAGCAGTTGACAGCTGCTTGTGCTCGACCTCTAGCAGGTGTGTTTAACCTGTGCAAATGAAGGCAGGTTAGAACAGGTGGGATGAAATTTCGAGGAGGGGGGGGAAAGATTACAGAAAGGGAACATTGCCCTTGAaatcatttcctttttttggcaGCGATCCCAATTTCATTCCCAATTAGCATGGTTATTTAATATTCTGCTCTTCAGTAAGCCATTgtaaattaaaaagaagaatCAGTTACTTGTCAGATGTGTTTAAGCTCGATTGCTACTCTGTAAATGAGAGATTTTCAGTAAATACTGACAATTCCAAATGGAAACAAACATGCCATCTATTCTCAGCTGTTGAGAAAAGAGGAGAGTGACCGTCCTCTGGTCATCCTCACACGCTCATTAGTACGATGTTTCTCTGCTGagctttgatttttatttatttattttcgtgGTGTGCGTTTTCTCCACCTGTACAGAATCTCTAACCTGCCAGATTCGTTCTGCCCTCAGGAAACCACATGCACTTGCGAAATGTGACCGTTTCTGAAATcaacaatgcaaataaaatctGTATGTGAATACTGCGGATCTGTGTACTATGCTTCTCTCTTTCAAAGCTGGGTGTATCTAAGCTTATTAAAAAGTAAGCTCCCTAACTGAGAAAATAAACTTGGTTGGAATATCA

Function

NR:

description
PREDICTED: roundabout homolog 2-like isoform X3

GO: NA

KEGG:

id description
K06754 ROBO2; roundabout, axon guidance receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681286.1 True 6563 mRNA 0.53 28 23541850 23690355

Neighbor

gene id symbol gene type direction distance location
ppp2cb ppp2cb,LOC107758729 coding upstream 27139 23503307 ~ 23514711 (+)
LOC103034079 NA coding upstream 44232 23494154 ~ 23497618 (+)
LOC111188215 NA coding upstream 47550 23479537 ~ 23494300 (+)
purg NA coding upstream 79875 23459368 ~ 23461975 (+)
fut10 fut10 coding upstream 324592 23203476 ~ 23217258 (+)
LOC111195073 NA coding downstream 13632 23703987 ~ 23707849 (+)
gramd2b gramd3 coding downstream 781851 24472206 ~ 24482883 (+)
trnam-cau_40 NA coding downstream 811519 24501874 ~ 24501945 (+)
phax phax coding downstream 815282 24505637 ~ 24509580 (+)
lmnb1 lmnb1 coding downstream 834458 24524813 ~ 24542250 (+)
G178634 NA non-coding upstream 22636 23516311 ~ 23519214 (+)
G178635 NA non-coding upstream 25949 23515575 ~ 23515901 (+)
G178632 NA non-coding upstream 41509 23499843 ~ 23500341 (+)
G178611 NA non-coding upstream 66645 23447089 ~ 23475205 (+)
G178624 wrn,LOC107715857,LOC107573262 non-coding upstream 109139 23427385 ~ 23432711 (+)
G178781 NA non-coding downstream 497631 24187986 ~ 24191257 (+)
G178805 NA non-coding downstream 601620 24291975 ~ 24293344 (+)
LOC111195075 NA non-coding downstream 607757 24298112 ~ 24301847 (+)
G178844 NA non-coding downstream 822233 24512588 ~ 24513208 (+)
G178853 NA non-coding downstream 896152 24586507 ~ 24587635 (+)
G178485 NA other upstream 576861 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 832293 22689001 ~ 22709557 (+)
G178352 NA other upstream 995720 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 1039691 22493440 ~ 22502159 (+)
hnrnpdl hnrnpdl,LOC107715891,LOC107702595,LOC107653490 other upstream 1050347 22486823 ~ 22491503 (+)
LOC103032894 LOC108424565 other downstream 757437 24447792 ~ 24454622 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 1553806 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 3140282 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 3223395 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 3833947 27524302 ~ 27525441 (+)

Expression


Co-expression Network