LOC103034699


Basic Information

Item Value
gene id LOC103034699
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24590973 ~ 24596595 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681295.1
CGAGAAGAGTGCTCGCTACTACAGCGCAAGCAGAGCTTAATAACAGCGATGTGACGCACATGCGTGATTCGCGAGGGTTTGTTTGGGTTCTGAGCGCCAcgtggagcagcagcagtgtcGACAGACCCTGCAGAGATAGAGCAGAGGAGCACGATCACAGTGTGCATCCTCAGACCACTGCTCTGGCTGCACTGCTGGGGGATGTCTTCAGGCTGCAGAGATGTGCAGCTCTCCGGATGATTATCACATCACTGTTCCGCCTTCATATGAGAACCTGGACGATGAGATATACCAGCCGTTTCCTCCACCACTGTCTCCAACATGTGCACATCTCTCAGAGACATCCAACAAGTCTGGGGAACAGGAGCAGAAGATTGGTGGCTTACTCTTGTCTCAGATGGAAGAGGAGCCGGTGATGCAGATGGACATGCCTCATACCGCTCTGAATGTGGACAGGCCAGTGAAACAATGCAtaatACTTGTGTCTGAAAAAGGAATACCTGCACTATGGGATGTTCTCAACAACACGTCTTTCAAAGGACAGGGACATGAAGAAGAAGATCTACAGATTCTGATGAGTGAAATTGAACAGTGGGGTCAGCAGCTGTATCCAGAAGAACCGTTTGAAACCTTCATCAATCAGCTGGAAGATGTAAGtgaccatccatccatacagACATGTGTCCAGAGTTTACGTCGGGGCATTGTGACGCCGTGTGCCATGTCTGGGTCTGGTGGCTGTGAAGACAAGTGTTGCACTATGGGAAATGTAGTCAAGCCTCAGAAGTCCACAGAAGATGAAGACCATCCTGAAACATAAAACCCAAGATCATGTATCTCTCTGAGCCCTAACAATTTATCAGTCTCCTAAATCAGAGGAGAACTGAAGGAATACTGGGCTTCTCTTAATGTTCTtgatttgttgtatttttcAGCAGAGAGAAGGCTGGGATTACAAGACATTTTCTCACACACTCAAACTCAACACTGATTTGTGATCACTATGGATGCTCACAATATAAACATTCTTTCTGACAGTAAAATGTATGTtgtattttagatgtttttgtaaatgtagtgctagaaatgtaaatgtaaataagtgTTAGAAACAGCAACttaaactgtaaatataaaaccATGATTTATTctgcttaaaaatatatgatttggCTCTGCATGCAACCATCATTAAAGTGTAGACTTTCAGGTTGAATTAAAGGAGTTAAACAAAATCATCCTATGAAGGGTGCAGGAATTGCAACCATTTTTCTACAAAGCCTTCTCAGTGGACAGTGCTTCATAGTACAGATGGACAATGACCAAAAGCATCTATAAgtagaccaacaccagcagatgacatggctttccaaaccatcactgattgtggaaacgtCACACTAGACATCAAGCAGCTGcatgtctctccactcttcctgcagactctggtcccttggtttccaaatgaaatgcaaatgtttctga
>XM_022681296.1
CGAGAAGAGTGCTCGCTACTACAGCGCAAGCAGAGCTTAATAACAGCGATGTGACGCACATGCGTGATTCGCGAGGGTTTGTTTGGGTTCTGAGCGCCAcgtggagcagcagcagtgtcGACAGACCCTGCAGAGATAGAGCAGAGGAGCACGATCACAGTGTGCATCCTCAGACCACTGCTCTGGCTGCACTGCTGGGGGATGTCTTCAGGCTGCAGAGATGTGCAGCTCTCCGGATGATTATCACATCACTGTTCCGCCTTCATATGAGAACCTGGACGATGAGATATACCAGCCGTTTCCTCCACCACTGTCTCCAACATGTGCACATCTCTCAGAGACATCCAACAAGTCTGGGGAACAGGAGCAGAAGATTGGTGGCTTACTCTTGTCTCAGATGGAAGAGGAGCCGGTGATGCAGATGGACATGCCTCATACCGCTCTGAATGTGGACAGGCCAGTGAAACAATGCAtaatACTTGTGTCTGAAAAAGGAATACCTGCACTATGGGATGTTCTCAACAACACGTCTTTCAAAGGACAGGGACATGAAGAAGAAGATCTACAGATTCTGATGAGTGAAATTGAACAGTGGGGTCAGCAGCTGTATCCAGAAGAACCGTTTGAAACCTTCATCAATCAGCTGGAAGATGTAAGtgaccatccatccatacaggtactgtttttttcttactATCAAaacctgtgtgagtgtgtgtcaggATGTTACATATTCTGTCCTACTGAATTTTATTTCACCAGTGCTTTCATATGCAGTGCAACTCTTTCTCATTTCTTTGTCTTTACATGAAACCTTACAACCAGACATGTG
>XM_022681297.1
CGAGAAGAGTGCTCGCTACTACAGCGCAAGCAGAGCTTAATAACAGCGATGTGACGCACATGCGTGATTCGCGAGGGTTTGTTTGGGTTCTGAGCGCCAcgtggagcagcagcagtgtcGACAGACCCTGCAGAGATAGAGCAGAGGAGCACGATCACAGTGTGCATCCTCAGACCACTGCTCTGGCTGCACTGCTGGGGGATGTCTTCAGGCTGCAGAGATGTGCAGCTCTCCGGATGATTATCACATCACTGTTCCGCCTTCATATGAGAACCTGGACGATGAGATATACCAGCCGTTTCCTCCACCACTGTCTCCAACATGTGCACATCTCTCAGAGACATCCAACAAGTCTGGGGAACAGGAGCAGAAGATTGGTGGCTTACTCTTGTCTCAGATGGAAGAGGAGCCGGTGATGCAGATGGACATGCCTCATACCGCTCTGAATGTGGACAGACTTGTGTCTGAAAAAGGAATACCTGCACTATGGGATGTTCTCAACAACACGTCTTTCAAAGGACAGGGACATGAAGAAGAAGATCTACAGATTCTGATGAGTGAAATTGAACAGTGGGGTCAGCAGCTGTATCCAGAAGAACCGTTTGAAACCTTCATCAATCAGCTGGAAGATGTAAGtgaccatccatccatacagACATGTGTCCAGAGTTTACGTCGGGGCATTGTGACGCCGTGTGCCATGTCTGGGTCTGGTGGCTGTGAAGACAAGTGTTGCACTATGGGAAATGTAGTCAAGCCTCAGAAGTCCACAGAAGATGAAGACCATCCTGAAACATAAAACCCAAGATCATGTATCTCTCTGAGCCCTAACAATTTATCAGTCTCCTAAATCAGAGGAGAACTGAAGGAATACTGGGCTTCTCTTAATGTTCTtgatttgttgtatttttcAGCAGAGAGAAGGCTGGGATTACAAGACATTTTCTCACACACTCAAACTCAACACTGATTTGTGATCACTATGGATGCTCACAATATAAACATTCTTTCTGACAGTAAAATGTATGTtgtattttagatgtttttgtaaatgtagtgctagaaatgtaaatgtaaataagtgTTAGAAACAGCAACttaaactgtaaatataaaaccATGATTTATTctgcttaaaaatatatgatttggCTCTGCATGCAACCATCATTAAAGTGTAGACTTTCAGGTTGAATTAAAGGAGTTAAACAAAATCATCCTATGAAGGGTGCAGGAATTGCAACCATTTTTCTACAAAGCCTTCTCAGTGGACAGTGCTTCATAGTACAGATGGACAATGACCAAAAGCATCTATAAgtagaccaacaccagcagatgacatggctttccaaaccatcactgattgtggaaacgtCACACTAGACATCAAGCAGCTGcatgtctctccactcttcctgcagactctggtcccttggtttccaaatgaaatgcaaatgtttctga
>XM_022681298.1
CGAGAAGAGTGCTCGCTACTACAGCGCAAGCAGAGCTTAATAACAGCGATGTGACGCACATGCGTGATTCGCGAGGGTTTGTTTGGGTTCTGAGCGCCAcgtggagcagcagcagtgtcGACAGACCCTGCAGAGATAGAGCAGAGGAGCACGATCACAGTGTGCATCCTCAGACCACTGCTCTGGCTGCACTGCTGGGGGATGTCTTCAGGCTGCAGAGATGTGCAGCTCTCCGGATGATTATCACATCACTGTTCCGCCTTCATATGAGAACCTGGACGATGAGATATACCAGCCGTTTCCTCCACCACTGTCTCCAACATGTGCACATCTCTCAGAGACATCCAACAAGTCTGGGGAACAGGAGCAGAAGATTGGTGGCTTACTCTTGTCTCAGATGGAAGAGGAGCCGGTGATGCAGATGGACATGCCTCATACCGCTCTGAATGTGGACAGGCCAGTGAAACAATGCAtaatACTTGTGTCTGAAAAAGGAATACCTGCACTATGGGATGTTCTCAACAACACGTCTTTCAAAGGACAGGGACATGAAGAAGAAGATCTACAGATTCTGATGAGTGAAATTGAACAGTGGGGTCAGCAGCTGTATCCAGAAGAACCGTTTGAAACCTTCATCAATCAGCTGGAAGATACATGTGTCCAGAGTTTACGTCGGGGCATTGTGACGCCGTGTGCCATGTCTGGGTCTGGTGGCTGTGAAGACAAGTGTTGCACTATGGGAAATGTAGTCAAGCCTCAGAAGTCCACAGAAGATGAAGACCATCCTGAAACATAAAACCCAAGATCATGTATCTCTCTGAGCCCTAACAATTTATCAGTCTCCTAAATCAGAGGAGAACTGAAGGAATACTGGGCTTCTCTTAATGTTCTtgatttgttgtatttttcAGCAGAGAGAAGGCTGGGATTACAAGACATTTTCTCACACACTCAAACTCAACACTGATTTGTGATCACTATGGATGCTCACAATATAAACATTCTTTCTGACAGTAAAATGTATGTtgtattttagatgtttttgtaaatgtagtgctagaaatgtaaatgtaaataagtgTTAGAAACAGCAACttaaactgtaaatataaaaccATGATTTATTctgcttaaaaatatatgatttggCTCTGCATGCAACCATCATTAAAGTGTAGACTTTCAGGTTGAATTAAAGGAGTTAAACAAAATCATCCTATGAAGGGTGCAGGAATTGCAACCATTTTTCTACAAAGCCTTCTCAGTGGACAGTGCTTCATAGTACAGATGGACAATGACCAAAAGCATCTATAAgtagaccaacaccagcagatgacatggctttccaaaccatcactgattgtggaaacgtCACACTAGACATCAAGCAGCTGcatgtctctccactcttcctgcagactctggtcccttggtttccaaatgaaatgcaaatgtttctga

Function

GO:

id name namespace
GO:0004112 cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681295.1 True 1485 mRNA 0.44 7 24590973 24596595
XM_022681296.1 False 832 mRNA 0.47 5 24590973 24595281
XM_022681297.1 False 1464 mRNA 0.44 7 24590973 24596595
XM_022681298.1 False 1461 mRNA 0.44 7 24590973 24596595

Neighbor

gene id symbol gene type direction distance location
lmnb1 lmnb1 coding upstream 48723 24524813 ~ 24542250 (+)
phax phax coding upstream 81393 24505637 ~ 24509580 (+)
trnam-cau_40 NA coding upstream 89028 24501874 ~ 24501945 (+)
gramd2b gramd3 coding upstream 108090 24472206 ~ 24482883 (+)
LOC111195073 NA coding upstream 883124 23703987 ~ 23707849 (+)
megf10 megf10,LOC107705845 coding downstream 7061 24603656 ~ 24676046 (+)
prrc1 prrc1,LOC107572184,LOC107705848,LOC107673757 coding downstream 87482 24684077 ~ 24699125 (+)
ctxn3 ctxn3,LOC107711251 coding downstream 129482 24726077 ~ 24739475 (+)
slc12a2 slc12a2,LOC107680742 coding downstream 165812 24762407 ~ 24816488 (+)
LOC103037195 slc27a6,LOC108277201 coding downstream 387188 24983783 ~ 25016698 (+)
G178853 NA non-coding upstream 3338 24586507 ~ 24587635 (+)
G178844 NA non-coding upstream 77765 24512588 ~ 24513208 (+)
LOC111195075 NA non-coding upstream 289126 24298112 ~ 24301847 (+)
G178805 NA non-coding upstream 297629 24291975 ~ 24293344 (+)
G178781 NA non-coding upstream 399716 24187986 ~ 24191257 (+)
LOC111195077 NA non-coding downstream 2278 24598873 ~ 24599611 (+)
G178873 NA non-coding downstream 61812 24658407 ~ 24678663 (+)
G178896 NA non-coding downstream 198888 24795483 ~ 24817313 (+)
G178928 NA non-coding downstream 364703 24961298 ~ 24962524 (+)
G178938 NA non-coding downstream 426445 25023040 ~ 25023262 (+)
LOC103032894 LOC108424565 other upstream 136351 24447792 ~ 24454622 (+)
G178485 NA other upstream 1625984 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 1881416 22689001 ~ 22709557 (+)
G178352 NA other upstream 2044843 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 2088814 22493440 ~ 22502159 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 647566 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 2234042 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 2317155 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 2927707 27524302 ~ 27525441 (+)
G180235 erg other downstream 6542749 31139344 ~ 31151095 (+)

Expression


Co-expression Network