LOC103025709


Basic Information

Item Value
gene id LOC103025709
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25526543 ~ 25550096 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681318.1
cacacacgcacacacacagtctgcaccgttacagagagagaatggaTGTCTGTGGGAGCTGCTGCTGGATTTTGGGTCTGCTGGGTCTGTGCTCGGTTATCGGGCAGAGTTCAGGAATCACCCGAACTTTCTACATCGCCGCCCGGGAGGAGGAGTGGGATTACTGCCCGGGGGGAGTGAACCCGGTCAGCGGCAGCCCTGCAGCATCGGACCAGCGTGCATCCCTGTTCCTGCAGCAAGGGCCCCATCGGATTGGccacatatataaaaaagctgTGTTCAGGCAGTACACAGATGGGTCCTACACCCAGGAGGTCCCTAAACCTGCCTGGCTGGGCTATCTGGGGCCTGTGCTCAGGGCTGAGGTTGGAGACGTTATGGAGATCCATATGAAGAACTTTGCATTCAGAAGCTATTCCATGCACCCTCATGGTGTCTTCTATGAGAAGAACTCAGAGGGTGCTTTGTATCCAGATAAAACCTCTGGAGCACTGAAGCTGGATGATGGTGTTCCACCGAATGGTACACACACCTATAAATGGACGGTGAAACCAGAATACGCCCCCACTGAGGGGGATTCCAACTGCCTGACTTGGGCTTATCACTCACACGTACTTGCCTCTAAAGACATCTCCTCTGGACTCATCGGAGCCCTGCTGACCTGCAAGAAAGGAAGCCTAAAGTCTGTTTCTGGAGCAGGGAATAACTACTCTCAAGTACAAAGAATGGATGTGGATCAGGACTTCCTCCTAATGTTTAGTGTGGTGGATGAGAATCTCAGCTGGTACTTAGAGGAGAACATCCACACTTTCTGCTCTGACCCTGCTGGCGTGGACCCAGAGGATCCAGACTTCCAGCATTCTAACAAAATGAATGCGATCAATGGATATGTATATGGAACCCTCCCTGGAATTAAGTTGTGCCAGAACAGAACCGTGGCTTGGCATCTCGTGGGCATGGGAAACGAGGTGGACGTCCACTCAGCATTTTTCCACGGCCACACGCTGCTCATGCACGGTCACCGCGTCGACACCGTCAGCCTGTTTCCTGCCACTTTTCTCACTACAGAAATGACCCCCTATACCGCAGGAACATGGCTTCTCAACTGCCAGGTCAACACCCATATACAAGATGGCATGCAGGCACTGTTTCGTGTTTCACCCTGTGGACTGCAGGGAGACTCCATGGCGTCTCTGAACGGAACAGTGAGGAAGTATTTCATAGCTGCTGAGACGGTTAAGTGGAAGTATGCCCCAACAGGAACGGACACTCTGACCAATGTTTCACTGACTGATAGCCAAAGCCCCTCAGAGGTATTTTTCGGGACGGGTGGTGGTCGTCTCGGTGGGGAGTATATGAAGGTGGTATTCAGAGCTTACACCGATCACACATTCACCAATCCAGTGCCAAACACCGGAAGAGACACACACCTTGGCATTCTGGGTCCTGTACTTCGTGCTGAGGTCGGGGATATTCTGCTGGTCACTTTTCTAAACAATGCTGACAGGAGTTATAGCATCCAGCCCCACGGCCTCCAGTACATGAAAGAATTTGAGGGAGCCCAGTATGAGAACGGCACAGAGAAGAACGGCTCTCACGTGCAGCCAGGAAAATCCTTCACCTACAGGTGGCAGGTGATGGAGGGGCCGTCTGAGAGTGACCCGCCCTGTATCTCCTACCTGTACTTCTCCTCCAGTGACTCTATCAGAGATACTAACTCTGGCCTCATCGGCCCCCTGCTGGTGTGTAAAAGAGGAGCTCTGAGCCCCAACAACACCCAGAGAGATGTGGACCACgagtttttcctgcttttctctATATTGGATGAAAACCTGAGCTGGTATCTGGAGAAGAACATACAGACATATGGAACGAATGAGTCCAACCAAGAGGATGAAGCCTTTATGGAGAGCAATAAGATGCATGCGGTGAATGGCTACGTGTACGGGAACCTACCGGGGCTGGAGATGTGTGAGGGTGACCGGATCAGATGGCACCTGCTGGGGCTCGGCACAGAGGTCGACGTGCATGCAGTTCACTTCCAGGGCAACACCTTCAACAGAGAGGGCACCACACGGGACACACTCACCCTGTTCCCACACACCTCTCTGAGTGTGTTCATGCAGCCAGACACAACCGGGCAGTTTGAGGTGAGCTGTCGGGTGAGTGAACACTACACAGGAGGGATGAGGCTGCAGTACAGTGTGAGGAGCTGTAAGGAGAGCGTGTCTGCTCCAGCCGCTGTTCCTACAGTGCACTATTTCATCGCTGCAGAGGAACAGGAGTGGGATTACTCACCTCAGCGCACCTGGGAGCTTCAGAACTTCAACACCACTGAACAGGACAGtCCAGGAAGTATATTTGTGGGGACGGGTGATAACAGACTCGGCTCCAAATATAAGAAAGTGATTTACAGGGAGTACACTGATTCCACCTTCCAGACCAGGAAACAGCGAGAGCCTGCAGAGAAATATCTGGAAATATTGgggCCAATAATCAGGGCAGAAGTTGGGGATGTTCTGGAGATAACATTTATGAATAAAGCGAGTCGGCCATACTCTATACAGCCTCATGGAGTAAAAACCTCTCCCCTACATTCACAGCCTGTCCCACCTGGGAACATCACCAGGCACCAGTGGATCGTTCCAGAGAGGTCTGGCCCGGGCATCTCTGACCCAAACTGCATCTCGTTTGCATATTACTCTTCTGTAGACTTCATTAAGGACACAATTAGTGGGCTAATTGGGCCACTAGTGATCTGCAGGAAAGGAACACTGGGTCCAGACAGACAGAGGCTGGATGTGGATCGGGAGTTCGCTCTCCTCTTCTTTATCTTTGATGAGAATAAGTCGTGGTATCTGgaagaaaatattaaaacctACTACACAGGCGCAAAACCTTTAATTAGAGACGGAGACTTTCAGGAGAGCAACAAAATGCACGCAATCAATGGCAAGCTATATGGCAATCTTAATGGACTGGAGATGCAGAAAGGGGAGCGGGTGAACTGGTATCTGCTGGGGATGGGCAGTGAGGTGGATATGCACACTGTCCACCTGCATGGCCAGACCTTTATTTACAAGACAGACCTGAGCCATCGAGCAGATGTGTTCGACCTGTTCCCGAGCTCGTTTCAGACGGTGGAGATGCTGGCAGACAGTGAGGGGACGTGGCTGTTACATTGTCACGTTGCAGACCACATCGAAGCAGGCATGGAGACCACCTATACCATCCAGCCGCGTGCAGGTGGCATTAGTGTGGGTCAGCACCTGAGCAGCATCACGTGGATCCTGGCTTTTATATCCACTGTTGGACTACTATGATATGGGATGAAGAATGAAGCTTTAGAGTtcactattttctttttttattagtagctGTGTTTTAATTGCATAAGATGTAAAATAATGCAgagtacatttaaatattaatgttggGTATGTTTTATAGAGTTTTTAGATAGCATTTTATACTATGTTTTCAGTGCGAGTCTTTAGTCACGTGTTAAAGATCTGATTAATAGTTTTGCACTTGTTTCAAGTGTTTCAATGCAGTCTTTTTTCTAAGGATTTCCTTTAGGGTTAATTAAGTTCATTAATGTATCTATCAAAACAGATTGGATAAATTTATTGGCATACCTTTTTattcagcgttttttttttttaatcaagaatattaaaaagagttcatCCTGA
>XM_022681319.1
cacacacgcacacacacagtctgcaccgttacagagagagaatggaTGTCTGTGGGAGCTGCTGCTGGATTTTGGGTCTGCTGGGTCTGTGCTCGGTTATCGGGCAGAGTTCAGGAATCACCCGAACTTTCTACATCGCCGCCCGGGAGGAGGAGTGGGATTACTGCCCGGGGGGAGTGAACCCGGTCAGCGGCAGCCCTGCAGCATCGGACCAGCGTGCATCCCTGTTCCTGCAGCAAGGGCCCCATCGGATTGGccacatatataaaaaagctgTGTTCAGGCAGTACACAGATGGGTCCTACACCCAGGAGGTCCCTAAACCTGCCTGGCTGGGCTATCTGGGGCCTGTGCTCAGGGCTGAGGTTGGAGACGTTATGGAGATCCATATGAAGAACTTTGCATTCAGAAGCTATTCCATGCACCCTCATGGTGTCTTCTATGAGAAGAACTCAGAGGGTGCTTTGTATCCAGATAAAACCTCTGGAGCACTGAAGCTGGATGATGGTGTTCCACCGAATGGTACACACACCTATAAATGGACGGTGAAACCAGAATACGCCCCCACTGAGGGGGATTCCAACTGCCTGACTTGGGCTTATCACTCACACGTACTTGCCTCTAAAGACATCTCCTCTGGACTCATCGGAGCCCTGCTGACCTGCAAGAAAGGAAGCCTAAAGTCTGTTTCTGGAGCAGGGAATAACTACTCTCAAGTACAAAGAATGGATGTGGATCAGGACTTCCTCCTAATGTTTAGTGTGGTGGATGAGAATCTCAGCTGGTACTTAGAGGAGAACATCCACACTTTCTGCTCTGACCCTGCTGGCGTGGACCCAGAGGATCCAGACTTCCAGCATTCTAACAAAATGAATGCGATCAATGGATATGTATATGGAACCCTCCCTGGAATTAAGTTGTGCCAGAACAGAACCGTGGCTTGGCATCTCGTGGGCATGGGAAACGAGGTGGACGTCCACTCAGCATTTTTCCACGGCCACACGCTGCTCATGCACGGTCACCGCGTCGACACCGTCAGCCTGTTTCCTGCCACTTTTCTCACTACAGAAATGACCCCCTATACCGCAGGAACATGGCTTCTCAACTGCCAGGTCAACACCCATATACAAGATGGCATGCAGGCACTGTTTCGTGTTTCACCCTGTGGACTGCAGGGAGACTCCATGGCGTCTCTGAACGGAACAGTGAGGAAGTATTTCATAGCTGCTGAGACGGTTAAGTGGAAGTATGCCCCAACAGGAACGGACACTCTGACCAATGTTTCACTGACTGATAGCCAAAGCCCCTCAGAGGTATTTTTCGGGACGGGTGGTGGTCGTCTCGGTGGGGAGTATATGAAGGTGGTATTCAGAGCTTACACCGATCACACATTCACCAATCCAGTGCCAAACACCGGAAGAGACACACACCTTGGCATTCTGGGTCCTGTACTTCGTGCTGAGGTCGGGGATATTCTGCTGGTCACTTTTCTAAACAATGCTGACAGGAGTTATAGCATCCAGCCCCACGGCCTCCAGTACATGAAAGAATTTGAGGGAGCCCAGTATGAGAACGGCACAGAGAAGAACGGCTCTCACGTGCAGCCAGGAAAATCCTTCACCTACAGGTGGCAGGTGATGGAGGGGCCGTCTGAGAGTGACCCGCCCTGTATCTCCTACCTGTACTTCTCCTCCAGTGACTCTATCAGAGATACTAACTCTGGCCTCATCGGCCCCCTGCTGGTGTGTAAAAGAGGAGCTCTGAGCCCCAACAACACCCAGAGAGATGTGGACCACgagtttttcctgcttttctctATATTGGATGAAAACCTGAGCTGGTATCTGGAGAAGAACATACAGACATATGGAACGAATGAGTCCAACCAAGAGGATGAAGCCTTTATGGAGAGCAATAAGATGCATGCGGTGAATGGCTACGTGTACGGGAACCTACCGGGGCTGGAGATGTGTGAGGGTGACCGGATCAGATGGCACCTGCTGGGGCTCGGCACAGAGGTCGACGTGCATGCAGTTCACTTCCAGGGCAACACCTTCAACAGAGAGGGCACCACACGGGACACACTCACCCTGTTCCCACACACCTCTCTGAGTGTGTTCATGCAGCCAGACACAACCGGGCAGTTTGAGGTGAGCTGTCGGGTGAGTGAACACTACACAGGAGGGATGAGGCTGCAGTACAGTGTGAGGAGCTGTAAGGAGAGCGTGTCTGCTCCAGCCGCTGTTCCTACAGTGCACTATTTCATCGCTGCAGAGGAACAGGAGTGGGATTACTCACCTCAGCGCACCTGGGAGCTTCAGAACTTCAACACCACTGAACAGGACAGtCCAGGAAGTATATTTGTGGGGACGGGTGATAACAGACTCGGCTCCAAATATAAGAAAGTGATTTACAGGGAGTACACTGATTCCACCTTCCAGACCAGGAAACAGCGAGAGCCTGCAGAGAAATATCTGGAAATATTGgggCCAATAATCAGGGCAGAAGTTGGGGATGTTCTGGAGATAACATTTATGAATAAAGCGAGTCGGCCATACTCTATACAGCCTCATGGAGTAAAAACCTCTCCCCTACATTCACAGCCTGTCCCACCTGGGAACATCACCAGGCACCAGTGGATCGTTCCAGAGAGGTCTGGCCCGGGCATCTCTGACCCAAACTGCATCTCGTTTGCATATTACTCTTCTGTAGACTTCATTAAGGACACAATTAGTGGGCTAATTGGGCCACTAGTGATCTGCAGGAAAGGAACACTGGGTCCAGACAGACAGAGGCTGGATGTGGATCGGGAGTTCGCTCTCCTCTTCTTTATCTTTGATGAGAATAAGTCGTGGTATCTGgaagaaaatattaaaacctACTACACAGGCGCAAAACCTTTAATTAGAGACGGAGACTTTCAGGAGAGCAACAAAATGCACGGATTTAGTCCATCCTCAGTCCAGCTTATACCATTATGGAGAGAAGGTAGTCTTGGCAGAAGCAGCATGCTATCACTGTCCTGGCATGACGTTCCCTGTAgtgtctaatatattcattctacaAACAGGATGGTGTGGTAGGTTGTTGGATATAGTTGTTTTCTACATTTAACAGTATttcataaatgaacaaaaaagatgaagaaaacaatttacacaaaaaaaatatttacattaacctgcattaaaagtactctttaCATGATCTGTGCAATTATACATTCTTACCAAAGAGGTTTATAAATCCCTGAATGCCCAAAACAAAGATTTAGTAGATATTTGAAGTATATCTCCACCTTATTCTGCACTTCAAAAAGTAGATGGCCATGTTTGATTATGTTTAAGTGAATTTCCAGTCCAGCAGCAGACCAGTAATACAGATTAAAATCCCAGTGATAACAAACATACAGAATCAGTAGTATGGAGACTATTGTTCACAGTAGTTTTACCATAAGGTTTGGTTGTTTTGGCGAGTCCACCCATCTTCGATTTGTACCTGTTTTTGTAATTGCACCTGTTTTCGTTTCACACCCGTTTTCATTTCGCACCCGTCTTCGTTTCACACACCTGTTTTCATTTCGCACCCGTTTTT

Function

GO: NA

KEGG:

id description
K14735 HEPH; hephaestin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681318.1 True 3695 mRNA 0.49 19 25526543 25550096
XM_022681319.1 False 3594 mRNA 0.49 17 25526543 25547678

Neighbor

gene id symbol gene type direction distance location
LOC103043838 stoml3b,LOC103043838,LOC108444492,LOC107556874,LOC108277281,LOC102781741,LOC107685018,LOC107720596,LOC101474847 coding upstream 167933 25339588 ~ 25358610 (+)
proser1 proser1,LOC107556855 coding upstream 189947 25323348 ~ 25336596 (+)
LOC103040246 LOC108444483 coding upstream 233650 25288607 ~ 25292893 (+)
vasp LOC108423768,LOC107575450 coding upstream 290721 25216130 ~ 25235822 (+)
dmpk dmpk coding upstream 322861 25179724 ~ 25203682 (+)
LOC103044955 slc43a2b,LOC103044955,LOC108410672,LOC108277386,LOC107701113,LOC107720664,LOC107684998 coding downstream 6968 25557064 ~ 25586563 (+)
LOC103045464 pitpnab,pitpna,LOC103045464,LOC108276543,LOC105890453,LOC108237022,LOC108410689,LOC107386993 coding downstream 39727 25589823 ~ 25617224 (+)
LOC103045760 LOC108410697 coding downstream 75260 25625356 ~ 25643316 (+)
LOC103021428 LOC108410728,LOC108277327 coding downstream 531699 26081795 ~ 26691002 (+)
nle1 nle1,LOC107720672,LOC107708614 coding downstream 1232952 26783048 ~ 26793500 (+)
G179034 NA non-coding upstream 45352 25459607 ~ 25481191 (+)
G179028 NA non-coding upstream 159207 25364307 ~ 25367336 (+)
G179007 NA non-coding upstream 209240 25260514 ~ 25317303 (+)
LOC111195080 tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006 non-coding upstream 266902 25257793 ~ 25259641 (+)
G179014 NA non-coding upstream 272994 25252524 ~ 25253549 (+)
G179173 NA non-coding downstream 221567 25771663 ~ 25771948 (+)
G179177 NA non-coding downstream 328547 25878643 ~ 25878855 (+)
G179183 NA non-coding downstream 414547 25964643 ~ 25968792 (+)
G179239 NA non-coding downstream 850912 26401008 ~ 26401267 (+)
G179320 slc25a1a,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324,LOC108276564,LOC105890537 non-coding downstream 1244307 26794403 ~ 26799202 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 269074 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 1071921 24447792 ~ 24454622 (+)
G178485 NA other upstream 2561554 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 2816986 22689001 ~ 22709557 (+)
G178352 NA other upstream 2980413 22544640 ~ 22546130 (+)
LOC103024073 LOC108424537 other downstream 1280541 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 1363654 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 1974206 27524302 ~ 27525441 (+)
G180235 erg other downstream 5589248 31139344 ~ 31151095 (+)
G180266 NA other downstream 5883102 31433198 ~ 31433909 (+)

Expression


Co-expression Network