LOC103028079 (arrb2,LOC100335038,LOC106567894,LOC105023937,LOC101076921)


Basic Information

Item Value
gene id LOC103028079
gene name arrb2,LOC100335038,LOC106567894,LOC105023937,LOC101076921
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 26927169 ~ 26939923 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681326.1
TTTCCGCTCCGCACAGCTGCTCGTCGTCGCTGGCGGGTCTGGGTCTGGCggagccgctgctgctgctgctaaaataGCGATAGATGTGTTTTACTGCACGACCTCACGATTAAGCGCTACAGGTTCCCGATCGTCTGACGGCCACATTCTCCCTGGATATGGGGGACAAGGCGGGCACGCGGGTATTCAAAAAGTCCAGTCCGAATTGCAAGATTACAGTATATTTGGGGAAAAGAGATTTTGTGGATCATTTAGATCAAGTGGACCCTGTCGATGGGGTCATTCTGGTTGACCCTGAATATCTCAAAGATCGAAAAGtGTTTGTGACTCTAACCTGTGCCTTCCGCTATGGCCGTGAAGACCTGGATgttcttggtctttctttccggAAAGATCTTTACATATCAACGTTTCAAGCCTTCCCACCCATACAGGAAGAGCGTAAGCCAAACAGTCGCCTTCAGGAGAGACTTTTGAAGAAACTGGGACAGCAGGCTCATCCTTTTCATTTTACTATCCCTCAGAACCTGCCATGCTCAGTTACCTTACAGCCTGGTCCTGAAGACACTGGAAAGGCCTGTGGGGTAGATTACGAGATCAGAGCTTTCTGTGCCAGGTCTGTGGAGGAGAAGATTCATAAACGGAATTCTGTCCGATTGGTGATTCGTAAGGTCCAGTATGCGCCTGAGAAACCTGGTCCCCAGCCAATGGTGGAGACAACAAGGAGCTTCTTAATGTCTGACCGGTCTCTGCATCTAGAAGCTTCTCTGGACAAAGAGCTGTATTATCATGGGGAACCCATAAGTGTGAATGTGCATGTGACCAACAACTCAACCAAGACTGTCAAAAGAGTCAAAATATCAGtGCGGCAGTATGCTGATATATGTCTGTTCAGCACAGCGCAGTATAAATGTCCGGTGGCTCAGATTGAGGCAGATGACCAGGTGTCCTCCAGCTCCACGTTCTGTAAGGTGTACACACTCACGCCCACTTTGAACAATAACAGAGAGAAGCGAGGGCTTGCATTAGATGGCAAACTGAAACATGAAGACACCAACCTGGCCTCCAGCACCAttgttAAGGAAGGATGTAACAAGGAGGTTCTTGGAGTTCTGGTGTCGTATCGAGTCAAAGTCAAACTCGTTGTCTCCCGCGGAGGGCTTTTAAGCAGCTTACTGGAGAGGGACGTCTCAGTGGAGCTGCCCTTTGTTTTAATGCATCCCAAACCCATAGATCTCTCCACCTCTCGACCAGCCTCAGCTGTACCAGAGGTGGATCCTCCTATTGACACTAACCTCATAGAGTTTGAAACAAACAGCTTCGCCCAGGATGATGACCTGGTGTTTGAAGACTTTGCCCGTCTGCGGTTAAAAGGAACCACTGAGGACAAGGATGAGGACTGCTGAGCCATTCCTTCTATCACATGTTCTTTATCCCCCCTTCTATTCGAACCAGAAACTCACAAAAtccactaactagctaacccacTCAAATGAACAATATCGCTCATTATCAAACTCTATTCTAAGCTTCATTGCATCATCCCTTTGGTGAAGCAGTATTTTACACACTTCTCGACAGTATTGTTCAGAAGAAAAGagcacttttttaaagagttGCTGAACATTTTCTACTGTTATAAATGATGACATGAAAATCTGAGGAAAGGTGCTAAATCTTAGAAATCTTTGAAAACGGGGGGGAAAATGCCACAGAAATTTCAAATCTCATCTCATAAGTGAATTGTGAGCTTACGTGCTGCTTCTGCCAACCTTCAGTGGAAAATAAGCAGGTAACAGATTTGGAAAGATGATCCAAATTGAAAGAACCTATGCTATTTTGTTGTTCTGTGATCTTCTAAAGTTGATTATTTTGAAATGcctttttaaaagcttaatttccatgtgtgtgtaaacaTTAGTAAACATTAGTGAAGAGTTCTTGATCACCAGttataa
>XM_022681327.1
GTTTCCGCTCCGCACAGCTGCTCGTCGTCGCTGGCGGGTCTGGGTCTGGCggagccgctgctgctgctgctaaaataGCGATAGATGTGTTTTACTGCACGACCTCACGATTAAGCGCTACAGGTTCCCGATCGTCTGACGGCCACATTCTCCCTGGATATGGGGGACAAGGCGGGCACGCGGGTATTCAAAAAGTCCAGTCCGAATTGCAAGATTACAGTATATTTGGGGAAAAGAGATTTTGTGGATCATTTAGATCAAGTGGACCCTGTCGATGGGGTCATTCTGGTTGACCCTGAATATCTCAAAGATCGAAAAGtGTTTGTGACTCTAACCTGTGCCTTCCGCTATGGCCGTGAAGACCTGGATgttcttggtctttctttccggAAAGATCTTTACATATCAACGTTTCAAGCCTTCCCACCCATACAGGAAGAGCGTAAGCCAAACAGTCGCCTTCAGGAGAGACTTTTGAAGAAACTGGGACAGCAGGCTCATCCTTTTCATTTTACTATCCCTCAGAACCTGCCATGCTCAGTTACCTTACAGCCTGGTCCTGAAGACACTGGAAAGGCCTGTGGGGTAGATTACGAGATCAGAGCTTTCTGTGCCAGGTCTGTGGAGGAGAAGATTCATAAACGGAATTCTGTCCGATTGGTGATTCGTAAGGTCCAGTATGCGCCTGAGAAACCTGGTCCCCAGCCAATGGTGGAGACAACAAGGAGCTTCTTAATGTCTGACCGGTCTCTGCATCTAGAAGCTTCTCTGGACAAAGAGCTGTATTATCATGGGGAACCCATAAGTGTGAATGTGCATGTGACCAACAACTCAACCAAGACTGTCAAAAGAGTCAAAATATCAGtGCGGCAGTATGCTGATATATGTCTGTTCAGCACAGCGCAGTATAAATGTCCGGTGGCTCAGATTGAGGCAGATGACCAGGTGTCCTCCAGCTCCACGTTCTGTAAGGTGTACACACTCACGCCCACTTTGAACAATAACAGAGAGAAGCGAGGGCTTGCATTAGATGGCAAACTGAAACATGAAGACACCAACCTGGCCTCCAGCACCAttgttAAGGAAGGATGTAACAAGGAGGTTCTTGGAGTTCTGGTGTCGTATCGAGTCAAAGTCAAACTCGTTGTCTCCCGCGGAGGGCTTTTAAGCAGCTTACTGGAGAGGGACGTCTCAGTGGAGCTGCCCTTTGTTTTAATGCATCCCAAACCCATAGATCTCTCCACCTCTCGACCAGCCTCAGCTGTACCAGAGGTGGATCCTCCTATTGACACTAACCTCATAGAGTTTGAAACAAACTTCGCCCAGGATGATGACCTGGTGTTTGAAGACTTTGCCCGTCTGCGGTTAAAAGGAACCACTGAGGACAAGGATGAGGACTGCTGAGCCATTCCTTCTATCACATGTTCTTTATCCCCCCTTCTATTCGAACCAGAAACTCACAAAAtccactaactagctaacccacTCAAATGAACAATATCGCTCATTATCAAACTCTATTCTAAGCTTCATTGCATCATCCCTTTGGTGAAGCAGTATTTTACACACTTCTCGACAGTATTGTTCAGAAGAAAAGagcacttttttaaagagttGCTGAACATTTTCTACTGTTATAAATGATGACATGAAAATCTGAGGAAAGGTGCTAAATCTTAGAAATCTTTGAAAACGGGGGGGAAAATGCCACAGAAATTTCAAATCTCATCTCATAAGTGAATTGTGAGCTTACGTGCTGCTTCTGCCAACCTTCAGTGGAAAATAAGCAGGTAACAGATTTGGAAAGATGATCCAAATTGAAAGAACCTATGCTATTTTGTTGTTCTGTGATCTTCTAAAGTTGATTATTTTGAAATGcctttttaaaagcttaatttccatgtgtgtgtaaacaTTAGTAAACATTAGTGAAGAGTTCTTGATCACCAGttataa
>XM_022681328.1
TTTCCGCTCCGCACAGCTGCTCGTCGTCGCTGGCGGGTCTGGGTCTGGCggagccgctgctgctgctgctaaaataGCGATAGATGTGTTTTACTGCACGACCTCACGATTAAGCGCTACAGGTTCCCGATCGTCTGACGGCCACATTCTCCCTGGATATGGGGGACAAGGCGGGCACGCGGGTATTCAAAAAGTCCAGTCCGAATTGCAAGATTACAGTATATTTGGGGAAAAGAGATTTTGTGGATCATTTAGATCAAGTGGACCCTGTCGATGGGGTCATTCTGGTTGACCCTGAATATCTCAAAGATCGAAAAGtGTTTGTGACTCTAACCTGTGCCTTCCGCTATGGCCGTGAAGACCTGGATgttcttggtctttctttccggAAAGATCTTTACATATCAACGTTTCAAGCCTTCCCACCCATACAGGAAGAGCGTAAGCCAAACAGTCGCCTTCAGGAGAGACTTTTGAAGAAACTGGGACAGCAGGCTCATCCTTTTCATTTTACTATCCCTCAGAACCTGCCATGCTCAGTTACCTTACAGCCTGGTCCTGAAGACACTGGAAAGGCCTGTGGGGTAGATTACGAGATCAGAGCTTTCTGTGCCAGGTCTGTGGAGGAGAAGATTCATAAACGGAATTCTGTCCGATTGGTGATTCGTAAGGTCCAGTATGCGCCTGAGAAACCTGGTCCCCAGCCAATGGTGGAGACAACAAGGAGCTTCTTAATGTCTGACCGGTCTCTGCATCTAGAAGCTTCTCTGGACAAAGAGCTGTATTATCATGGGGAACCCATAAGTGTGAATGTGCATGTGACCAACAACTCAACCAAGACTGTCAAAAGAGTCAAAATATCAGtGCGGCAGTATGCTGATATATGTCTGTTCAGCACAGCGCAGTATAAATGTCCGGTGGCTCAGATTGAGGCAGATGACCAGGTGTCCTCCAGCTCCACGTTCTGTAAGGTGTACACACTCACGCCCACTTTGAACAATAACAGAGAGAAGCGAGGGCTTGCATTAGATGGCAAACTGAAACATGAAGACACCAACCTGGCCTCCAGCACCAttgttAAGGAAGGATGTAACAAGGAGGTTCTTGGAGTTCTGGTGTCGTATCGAGTCAAAGTCAAACTCGTTGTCTCCCGCGGAGGGGACGTCTCAGTGGAGCTGCCCTTTGTTTTAATGCATCCCAAACCCATAGATCTCTCCACCTCTCGACCAGCCTCAGCTGTACCAGAGGTGGATCCTCCTATTGACACTAACCTCATAGAGTTTGAAACAAACAGCTTCGCCCAGGATGATGACCTGGTGTTTGAAGACTTTGCCCGTCTGCGGTTAAAAGGAACCACTGAGGACAAGGATGAGGACTGCTGAGCCATTCCTTCTATCACATGTTCTTTATCCCCCCTTCTATTCGAACCAGAAACTCACAAAAtccactaactagctaacccacTCAAATGAACAATATCGCTCATTATCAAACTCTATTCTAAGCTTCATTGCATCATCCCTTTGGTGAAGCAGTATTTTACACACTTCTCGACAGTATTGTTCAGAAGAAAAGagcacttttttaaagagttGCTGAACATTTTCTACTGTTATAAATGATGACATGAAAATCTGAGGAAAGGTGCTAAATCTTAGAAATCTTTGAAAACGGGGGGGAAAATGCCACAGAAATTTCAAATCTCATCTCATAAGTGAATTGTGAGCTTACGTGCTGCTTCTGCCAACCTTCAGTGGAAAATAAGCAGGTAACAGATTTGGAAAGATGATCCAAATTGAAAGAACCTATGCTATTTTGTTGTTCTGTGATCTTCTAAAGTTGATTATTTTGAAATGcctttttaaaagcttaatttccatgtgtgtgtaaacaTTAGTAAACATTAGTGAAGAGTTCTTGATCACCAGttataa
>XM_022681329.1
GTTTCCGCTCCGCACAGCTGCTCGTCGTCGCTGGCGGGTCTGGGTCTGGCggagccgctgctgctgctgctaaaataGCGATAGATGTGTTTTACTGCACGACCTCACGATTAAGCGCTACAGGTTCCCGATCGTCTGACGGCCACATTCTCCCTGGATATGGGGGACAAGGCGGGCACGCGGGTATTCAAAAAGTCCAGTCCGAATTGCAAGATTACAGTATATTTGGGGAAAAGAGATTTTGTGGATCATTTAGATCAAGTGGACCCTGTCGATGGGGTCATTCTGGTTGACCCTGAATATCTCAAAGATCGAAAAGtGTTTGTGACTCTAACCTGTGCCTTCCGCTATGGCCGTGAAGACCTGGATgttcttggtctttctttccggAAAGATCTTTACATATCAACGTTTCAAGCCTTCCCACCCATACAGGAAGAGCGTAAGCCAAACAGTCGCCTTCAGGAGAGACTTTTGAAGAAACTGGGACAGCAGGCTCATCCTTTTCATTTTACTATCCCTCAGAACCTGCCATGCTCAGTTACCTTACAGCCTGGTCCTGAAGACACTGGAAAGGCCTGTGGGGTAGATTACGAGATCAGAGCTTTCTGTGCCAGGTCTGTGGAGGAGAAGATTCATAAACGGAATTCTGTCCGATTGGTGATTCGTAAGGTCCAGTATGCGCCTGAGAAACCTGGTCCCCAGCCAATGGTGGAGACAACAAGGAGCTTCTTAATGTCTGACCGGTCTCTGCATCTAGAAGCTTCTCTGGACAAAGAGCTGTATTATCATGGGGAACCCATAAGTGTGAATGTGCATGTGACCAACAACTCAACCAAGACTGTCAAAAGAGTCAAAATATCAGtGCGGCAGTATGCTGATATATGTCTGTTCAGCACAGCGCAGTATAAATGTCCGGTGGCTCAGATTGAGGCAGATGACCAGGTGTCCTCCAGCTCCACGTTCTGTAAGGTGTACACACTCACGCCCACTTTGAACAATAACAGAGAGAAGCGAGGGCTTGCATTAGATGGCAAACTGAAACATGAAGACACCAACCTGGCCTCCAGCACCAttgttAAGGAAGGATGTAACAAGGAGGTTCTTGGAGTTCTGGTGTCGTATCGAGTCAAAGTCAAACTCGTTGTCTCCCGCGGAGGGGACGTCTCAGTGGAGCTGCCCTTTGTTTTAATGCATCCCAAACCCATAGATCTCTCCACCTCTCGACCAGCCTCAGCTGTACCAGAGGTGGATCCTCCTATTGACACTAACCTCATAGAGTTTGAAACAAACTTCGCCCAGGATGATGACCTGGTGTTTGAAGACTTTGCCCGTCTGCGGTTAAAAGGAACCACTGAGGACAAGGATGAGGACTGCTGAGCCATTCCTTCTATCACATGTTCTTTATCCCCCCTTCTATTCGAACCAGAAACTCACAAAAtccactaactagctaacccacTCAAATGAACAATATCGCTCATTATCAAACTCTATTCTAAGCTTCATTGCATCATCCCTTTGGTGAAGCAGTATTTTACACACTTCTCGACAGTATTGTTCAGAAGAAAAGagcacttttttaaagagttGCTGAACATTTTCTACTGTTATAAATGATGACATGAAAATCTGAGGAAAGGTGCTAAATCTTAGAAATCTTTGAAAACGGGGGGGAAAATGCCACAGAAATTTCAAATCTCATCTCATAAGTGAATTGTGAGCTTACGTGCTGCTTCTGCCAACCTTCAGTGGAAAATAAGCAGGTAACAGATTTGGAAAGATGATCCAAATTGAAAGAACCTATGCTATTTTGTTGTTCTGTGATCTTCTAAAGTTGATTATTTTGAAATGcctttttaaaagcttaatttccatgtgtgtgtaaacaTTAGTAAACATTAGTGAAGAGTTCTTGATCACCAGttataa

Function

symbol description
arrb2 Enables angiotensin receptor binding activity and ubiquitin protein ligase binding activity. Involved in several processes, including cellular protein metabolic process; desensitization of G protein-coupled receptor signaling pathway; and negative regulation of NF-kappaB transcription factor activity. Located in several cellular components, including cytosol; endocytic vesicle; and nucleoplasm. Biomarker of portal hypertension.

NR:

description
PREDICTED: beta-arrestin-2 isoform X1

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K04439 ARRB; beta-arrestin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681326.1 True 1958 mRNA 0.45 17 26927169 26939922
XM_022681327.1 False 1956 mRNA 0.45 17 26927169 26939923
XM_022681328.1 False 1934 mRNA 0.45 16 26927169 26939922
XM_022681329.1 False 1932 mRNA 0.45 16 26927169 26939923

Neighbor

gene id symbol gene type direction distance location
med11 med11,LOC107720680,LOC107676028 coding downstream 7326 26916334 ~ 26919843 (-)
LOC103027750 zgc:103508,cssa04h17orf49,LOC108424543,LOC107720679,LOC107742347,LOC107702799 coding downstream 14346 26909211 ~ 26912823 (-)
LOC103023750 LOC108424450 coding downstream 101313 26822739 ~ 26825856 (-)
LOC103031551 NA coding downstream 112041 26811030 ~ 26815128 (-)
LOC103046333 slc25a1a,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324,LOC108276564,LOC105890537 coding downstream 127916 26794394 ~ 26799253 (-)
tmem126a NA coding upstream 48694 26988617 ~ 26991633 (-)
LOC103044875 NA coding upstream 507428 27447351 ~ 27466674 (-)
LOC103045184 NA coding upstream 524116 27464039 ~ 27464863 (-)
vps11 vps11,LOC107691631,LOC107744603 coding upstream 540736 27480659 ~ 27493366 (-)
LOC103027279 NA coding upstream 571208 27511131 ~ 27518562 (-)
G179490 NA non-coding downstream 38084 26884446 ~ 26889085 (-)
G179487 LOC108424537 non-coding downstream 47746 26877576 ~ 26879423 (-)
G179475 NA non-coding downstream 52606 26872578 ~ 26874563 (-)
G179306 NA non-coding downstream 230593 26592235 ~ 26696576 (-)
G179304 NA non-coding downstream 359099 26567644 ~ 26568070 (-)
G179524 NA non-coding upstream 70601 27010524 ~ 27010818 (-)
G179528 NA non-coding upstream 75822 27015745 ~ 27015966 (-)
G179572 hyou1,LOC107588517 non-coding upstream 565772 27505695 ~ 27507977 (-)
G179596 NA non-coding upstream 723064 27662987 ~ 27663294 (-)
G179597 NA non-coding upstream 726836 27666759 ~ 27667611 (-)
LOC103047293 LOC108410718,LOC106581537 other downstream 1062695 25656255 ~ 25864474 (-)
LOC103043022 LOC108410630,LOC107556853 other downstream 1454925 25363932 ~ 25472244 (-)
thsd1 thsd1 other downstream 1624086 25293675 ~ 25303083 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other downstream 1719783 25203325 ~ 25207386 (-)
G178982 hint1,LOC107665476 other downstream 1793013 25130982 ~ 25134156 (-)
G179569 NA other upstream 500308 27440231 ~ 27443316 (-)
ift46 ift46 other upstream 530163 27470086 ~ 27477978 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other upstream 583208 27523131 ~ 27524135 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 584405 27524328 ~ 27525388 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other upstream 621922 27561845 ~ 27566692 (-)

Expression


Co-expression Network