LOC103027279


Basic Information

Item Value
gene id LOC103027279
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27511131 ~ 27518562 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681354.1
GAAAGTGACAGAGACCCAGACGCAGAGGGAGCGTGAAGACGTGCTTACAAGCCAGGACACAATGTGGCTGCTTCTCCTACTGTATCAGCTTGGCCTGATTCTCCACAGCTGTGCCCAGAATCCTTGTTTTACAAACCCTACATTCAGAGAGCCAGCCAACTCAGATATCACGGTCGTTTGTGGCCCACACAGGATTGATCTGCGTATTCTGCTGTGTCCCATTTACTTTGGAGGATATAATGAAACACTGATGGCTCTGAACAGTGTCTTCAACAAACCAGAATGCATGGGGACCCCGGTGTGGTCTGTAGACCCCCCTATCCTCCGATTTCAGTTTCCTATCACTGAGACAGGCATCAGTGCGTGTGCtactaaaataaagATCACCCAGGAGATTGGTTCGGGGATCTTCGCAGACTATTCCATTGTCCAGTATGTGAACATCTTGGGAATTGTGAACTCACTGGACCCAGGTGCTGGAATAATTACCTATCATTCTGAGATGATTTACTTGTTCTCCTGCCGATACCCACTGCAGTACCTGGtcaacaacacagagaccagcGTATCAGGAGTGAGCCTGGCCATTAATGACAATAATGGCAGTTTCATTCAAACTCTTAATATGAGGCTGTATGAGGACAATAAGTACACAACTTATCTCCAGATACCCTCATCAGGAATGCAACTGAAAACCAGGATTTATGTGCAGGTTCGGGCCACTAACCTCACAACAAGGTTCAATGTTATGCTGGATCGATGCTATGCCTCCATCAGCCCATACCCTATAAACACCACATACTACGATCTTTTTGTGGGGTGTACCCGTGATAGTCAGACTGTGATGGGTATCAATGGTGTTAGTCAAGAGGCTCGCTTCTCCTTTGAGGCCTTTCGGTTTGTTGAGCACAGGAACCAGACCATATCCACCTTCTATCTGCATTGTGCTACCAGACTCTGTGAGAGTTCCGCCTGCAGTAGTCTTCGGCCGAATTGTACGACATCTGGGAGAAGAAAGAGGGGGGTGAATTCAGAGCAAAACACCATAGTAAGTGACATGGCCACTGTCAGCTCTGGACCCATCATCACCTCAGTGGACAATGGTGCAGAGTCACGACCGTTTTCATCAGCAAACGAAGAGTcccaaaaaaacagcacagtgtTCGGTGTATCAGTAGCTGTTGGGATGCTTGGCACACTCTGCGTCACCCTGCTGGCAGTGATTATCTACCGGATGCACAGGGGCAAGTCTGCTAACGCTGCAGAGAACAGCTTCTTCCAATGAGCATACTCACAAAGACAGAGGTGCTGAACTGGGCCTAGCTATTGCATTTCAGAATTTCCTAATATATTATAAGGACAAAATACATTCCACATGTCCAGTGCCTTCATGGAATTCACTCTGTTGAACTGCTCAACAGAGTAGGAGTATTGATTTGGAGTTGGAGTATTAATTATTGGACATTAaagaaatgctgtttttttagtttaatctCTGTTTGTAACATATCAATTACCAGGTCGGTACCAAAAATAACAGAACAGTCATACCTTGCAATAATAgattaaaatacacaatacCATACTTTGCTTTGAGAATAACAGTATTTGGCATGCTTTTTAGTACAAGCTATacataattaaacaaacaaatgattaCTCTCATCTAGATCAGATTCTGAAACTTTACTTTCAGTAACTACAAAACTTTCCAAACACCAGCCTGGTTACAGGAAACCTGTGATGCTTGAAAGGAACACAAGTGACAAATAGAAGTGGAGGCTTAGTCACTAATTTTCTCTTACACGAAATTTGTACTATAACCAGACATAActacatatctttttttttttttttttgcatgcagtttttatataaaataaataagctatGTGTAAATGTTGAGATTCTTCTGCATGTTTAATAATTGACTATCTTCTGTTGTCACACAATGTTTTGTTGTAGAAAGTGCATAAAAATACCTTCAGTTATccaaataaaacactaaataccaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681354.1 True 2015 mRNA 0.42 11 27511131 27518562

Neighbor

gene id symbol gene type direction distance location
vps11 vps11,LOC107691631,LOC107744603 coding downstream 17765 27480659 ~ 27493366 (-)
LOC103044875 NA coding downstream 44457 27447351 ~ 27466674 (-)
LOC103045184 NA coding downstream 46268 27464039 ~ 27464863 (-)
tmem126a NA coding downstream 519498 26988617 ~ 26991633 (-)
LOC103028079 arrb2,LOC100335038,LOC106567894,LOC105023937,LOC101076921 coding downstream 571208 26927169 ~ 26939923 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399,LOC107577081 coding upstream 10098 27528660 ~ 27539710 (-)
bsx bsx,LOC107747047 coding upstream 73009 27591571 ~ 27594524 (-)
LOC103041089 lim2.1,LOC103041089,LOC108423752,LOC107579014 coding upstream 81530 27600092 ~ 27606283 (-)
LOC103039144 LOC108423784,LOC108277316 coding upstream 892450 28411012 ~ 28570105 (-)
panx3 panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702 coding upstream 1421029 28939591 ~ 28949916 (-)
G179572 hyou1,LOC107588517 non-coding downstream 3154 27505695 ~ 27507977 (-)
G179528 NA non-coding downstream 495165 27015745 ~ 27015966 (-)
G179524 NA non-coding downstream 500313 27010524 ~ 27010818 (-)
G179490 NA non-coding downstream 622046 26884446 ~ 26889085 (-)
G179487 LOC108424537 non-coding downstream 631708 26877576 ~ 26879423 (-)
G179596 NA non-coding upstream 144425 27662987 ~ 27663294 (-)
G179597 NA non-coding upstream 148197 27666759 ~ 27667611 (-)
G179642 NA non-coding upstream 169564 27688126 ~ 27691388 (-)
G179651 NA non-coding upstream 394268 27912830 ~ 27964374 (-)
G179669 NA non-coding upstream 869410 28387972 ~ 28389380 (-)
ift46 ift46 other downstream 33153 27470086 ~ 27477978 (-)
G179569 NA other downstream 67815 27440231 ~ 27443316 (-)
LOC103047293 LOC108410718,LOC106581537 other downstream 1646657 25656255 ~ 25864474 (-)
LOC103043022 LOC108410630,LOC107556853 other downstream 2038887 25363932 ~ 25472244 (-)
thsd1 thsd1 other downstream 2208048 25293675 ~ 25303083 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other upstream 4569 27523131 ~ 27524135 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 5766 27524328 ~ 27525388 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other upstream 43283 27561845 ~ 27566692 (-)
G179816 NA other upstream 1332128 28850690 ~ 28851105 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other upstream 3428384 30946946 ~ 30957767 (-)

Expression


Co-expression Network