panx3 (panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702)


Basic Information

Item Value
gene id panx3
gene name panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 28939591 ~ 28949916 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681361.1
CCATGGCTTCTCCAGGGAGTTCCATAACCTCTTTAATTACCCCTTAACCCTGTCCAGTACAGCCTCCAGTTCAGTTCAGCCCTCCTCCAGTACTTAAAGCTCTCGCCAGCACCCCCTTCTCTTTGCCAGCCTCAGGACCAAGTCACTATTGGAGCCACTGCATCGGGAACACTAAAGTTTTGGAAATGTCCATTGCTAACACGGCCGCTCAGGCTGTGCTGTCTGATGCCCTGCTTCGGGACAAAGGGGACAACAGCGTCCGCAACCTGGAACTGGAGCTTCCTTTAGACAAAGTCATCAAGTTCGTGTCTGTGGGACTTCCACTGCTGCTGGTGTCGTTGGCTTTTGCCCGGGAAATCTCCATCGGTCCACAGATCAGCTGTTTCCCTCCCAGCAACTTCACAGTGAAGCAGGCTGCATATGTCGACACATACTGCTGGGACTCGCTGATGCACCACGAGTTTGACACAAATGGGAACTTCGAAGAGCGCTCACTGTGGGTGCACAAGATGTTCCCCTACTCCTTGCTGATGATGTCGATGATGATGTACCTGCCAGCTCTGATCTGGAAGTTCCTGGCTATGCCAAGCCTGGGGTCGGACCTGCTCTTCATCATTGATGAGCTGGACAAGTCCTACAACCGCTCGGTGCGCTTGGCTCAGAGCATCCTGGACCTCAAACAAAACTCAGAGAACCCACAGAACTTCCAGGTGGAGCTGCAGAGAGCCAAGAGGAAACGCTACTTTGAGTACCCCCTACTGGAGAGATACATGCAGTGCAAGCACGGCTCCTACTTCTTGGTCAGCATGCTCTTCCTCCGGGGCTTCCTCTTGCTGACCTTCATGTCTGCCTCCTGCCTCTACCTGGTCTACTTCCACCTCTCAGCTTTTATGCAGGACGAGTTCAACTGCTTTGTGCGCACCGGACTCCTCCGCGAGCAGGCCTGGGTGCCGGAGCTGGTCCAGTGCAAGATGACCAGCCAGCTGGTCTTCCAGGTCATTAGTGTGGCTAACGGCGCTGTGTACGTGCTACTGGCTCCTGTGGTGATCTTCAGTCTGCTGCGTCTCTTCTGCTGGGACACCAGCTTCCTGTCCTTGTATGAGGTGCTTCCTGCCTTGGGCCTCATCAGCGGGCAGAAGCTGGGCTGCCCCCTCAACGACCTGAACGTGCTGCTGTTGTTCCTGCGCGCCAATGTGACGCAGCTTCACTCTTATGGCCGCTTGAGAGCCCTGTGCTCTCTGGCGCCTCCACAGGTGCAGAGGGGTAAGGGCGCACTGACAGAGGAGCAGGTCGAGCAGGCTGCCGAGGCGGCCGAGGCAGCGGAGGAACTGGAGGAGGAGCTGAGGGAGGCCAGAGAGGAGGGCAAGCACAACCTGGTGGACATCATGACCGTGCTCGGGGCGGCCAGAGGAAACGTGGTGAACTGTCCGGAAGAGCGCcctctggtggaggagaacatgacgctTGAGCCTAACCACCAGGGGTACCATGAATTGAAGGAGACTACAACATGTTGTTTTGGCTAAGTATTCAACAAGGAACCAAAGCATCATTTCCAGGGGCCAAACATTAAGGGGCAGCACCATGTCCTAGCCAAACCCCTCCAAACTTCACATTATCCTACAGATTACAGCTGTAATAAACAAACATAGAATGGAAATTGTCCATTAACAGTACCTCAGGAATACCCCAGAAATCCCTTCCAATACCCCCAAAAAGCCTCCTTTAGAATTAGTAGCTTATATGATAgcatttttgttctttatttatacttatttgTTCGTCTGTCTGTGATAATGTCTCACTCTCTTTGCTGAACCTTTTAATTTTGAATAAGATCTTTACTTGACTTTTTTCCCTTCTGTGaactgttaaaataaagttttattttatttgtgtttgtagcTGAA

Function

symbol description
panx3 Predicted to enable wide pore channel activity. Acts upstream of or within cranial skeletal system development and ossification. Predicted to be located in gap junction and membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including dermal bone; eye; heart; liver; and pleuroperitoneal region. Orthologous to human PANX3 (pannexin 3).

NR:

description
PREDICTED: pannexin-3-like isoform X1

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0005921 gap junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20857 PANX2_3; pannexin 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681361.1 True 1910 mRNA 0.52 6 28939591 28949916

Neighbor

gene id symbol gene type direction distance location
LOC103039144 LOC108423784,LOC108277316 coding downstream 369486 28411012 ~ 28570105 (-)
LOC103041089 lim2.1,LOC103041089,LOC108423752,LOC107579014 coding downstream 1333308 27600092 ~ 27606283 (-)
bsx bsx,LOC107747047 coding downstream 1345067 27591571 ~ 27594524 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399,LOC107577081 coding downstream 1399881 27528660 ~ 27539710 (-)
LOC103027279 NA coding downstream 1421029 27511131 ~ 27518562 (-)
pknox2 pknox2,LOC107691639,LOC106567647,LOC106603668 coding upstream 4123 28954039 ~ 28998439 (-)
robo3 robo3,LOC107751391,LOC107577175 coding upstream 209124 29159040 ~ 29364276 (-)
picalm picalm,LOC107744613 coding upstream 622738 29572654 ~ 29628399 (-)
cblb cblb,LOC107693962,LOC107576804,LOC107747038 coding upstream 1329180 30279096 ~ 30419086 (-)
crybg3 NA coding upstream 1727855 30677771 ~ 30733688 (-)
G179843 NA non-coding downstream 6449 28915288 ~ 28933142 (-)
G179844 NA non-coding downstream 22529 28916682 ~ 28917062 (-)
G179842 NA non-coding downstream 27120 28912169 ~ 28912471 (-)
G179779 NA non-coding downstream 90847 28659992 ~ 28848744 (-)
G179815 NA non-coding downstream 92113 28847119 ~ 28847478 (-)
G179845 NA non-coding upstream 1548 28951464 ~ 28951680 (-)
G179837 NA non-coding upstream 4133 28954049 ~ 29088595 (-)
G179848 NA non-coding upstream 40697 28990613 ~ 28991127 (-)
LOC111195083 NA non-coding upstream 92573 29042489 ~ 29088959 (-)
G179913 NA non-coding upstream 555643 29505559 ~ 29505986 (-)
G179816 NA other downstream 88486 28850690 ~ 28851105 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 1372899 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 1414203 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 1415456 27523131 ~ 27524135 (-)
ift46 ift46 other downstream 1461613 27470086 ~ 27477978 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other upstream 1997030 30946946 ~ 30957767 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 2944286 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 3290263 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 3486409 32436325 ~ 32584343 (-)
LOC103033173 NA other upstream 4855324 33805240 ~ 33855632 (-)

Expression


Co-expression Network