pknox2 (pknox2,LOC107691639,LOC106567647,LOC106603668)


Basic Information

Item Value
gene id pknox2
gene name pknox2,LOC107691639,LOC106567647,LOC106603668
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 28954039 ~ 28998439 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681362.1
TTGTGCATTTTCTATTGCAGGGTCTCCATGTGAAGCTCTCCCATGATGCAACATGTGCCTCCAGCACCAGCACTGACAATGATGGCCACACAGAGCGTCCCTCCACCATCCTATCAAGAGAGCCAACAGATGACGGGCACCACGCAGCAGAACTCCAAGGCCCAGCAGGTCCACATCTCAGCATCATCAACAGCTGGGACCACCCCGGTCAGTGTGACCCTCGACCCACAGGCACAGCTGGAGTCAGACAAACGGGCTGTTTACAGGCATCCTCTGTTCCCTCTGCTGGCTCTGCTTTTTGAGAAGTGTGAACAGGCCACACAGGGCTCCGAGTGCATCACCTCGGCCAGCTTTGACGTGGACATAGAAAACTTTGTGCACCAGCAGGAGCAGGACCACAAGCCTTTCTTTAGTGAGGACCCTGAACTGGACAACCTGATGGTGAAGGCGATTCAGGTGTTACGGATTCacctgctggagctggagaagGTGAATGAGCTCTGTAAAGACTTCTGCAATCGCTACATTACCTGCCTCAAGACGAAGATGCACAGTGACAATCTGCTACGCAATGACCTGGGAGGACCATACTCACCATCACACACAAACCTAccacagGAATTGCTGCAGAGCTCCTCTCCTTCGCTCTCCTCTGTGTCCAGCTCGGTTAACCCCTCAGGCATTGTGGTCCCTGCTTGCTCTCTGCCTCAGAGCAATGTGACAATGACCACCATCAACTCACAGGTGGTGTCAGGTGGAACCCTGTATCAGCCGGTTGCTATGGTGACCTCTCAGGGGCAGGTGTTAACCCAGAGTCTACCGCAGGGGACCATCCAGATCCAGAACACACAGGTGAATCTGGATCTCTCGTCCCTTTTGGACAGCGATGACAAGAAGTCCAAGAACAAGCGAGGCGTTCTCCCCAAACACGCCACCAACATCATGCGCTCCTGGCTCTTCCAGCACCTCATGCATCCGTACCCCACAGAAGATGAGAAAAGACAGATCGCAGCACAGACAAACCTCACCTTATTGCAAGTGAACAACTGgtttataaatgcCCGCAGGCGTATCCTGCAGCCCATGCTCGACGCCAGTAACCCTGACCCTGCCCCTAAAGCTAAGAAGATGAAGTCACAGCACAGACCCACGCAGCGCTTCTGGCCCGATTCCATCGTGGCTGGAGTTCTGCAGACGCACGGCCCACACTCTGCAGGCAACTCAGACAGTCCTTTGGGTTTGGACGGACTTCAGCCGCTGTCCTCTGACTCGGCCACCCTGGCTATGCAGCAGGCCATGCTGGCCGGGGCCGACGATTCCATGGACGGCACAGAGGATGACGAGGAGgacgaggaagaggaggaggaagggatGGAGGAGGacgaagaggaagaggaggaggaagatagtgagggagggaggcagCTGTCTGGAAGGAGAGATATGCGCCTTGATCACAGCGAGGCACTGGAGTAACTCACAGGAAATTACATCACTGGCCTGACacatcatgattttaattattttattttattttatttttttacatttcccaCAATTTACACTAAACCATTAAGAGCTTCGTATTATTCAGTTAAACACAGGAGGgcctttttgaaaaaaaaaaaagagattaagaAATAACAGGCTGTTCATaattacacactgtaaaaatgattCATTGTTGcctacaattttaagtttattcaaataataaaataaaacaacagaataTTTGTTACTGTTCTGCTATTTTACAACTGCGTGTCCAGTTCATCCTTGATATGGTAATCAagtaaaattagaataaaaggGACATTATAATACCTTTGTCAAGCCCTTACTAACCCTTAACAAGCCAGTTGTTATGTCATTAATAGGCTTTCTTTGGGTCCGAAACAAAGTAGCAGGTGTAAAAGTGGCAGTGAACTACGGTCCAGACCAAAGGACAAGAGTTTGGTCCGACCTAAAGATGTGGTCTCAGTCTGggtctactgaaccatggtctatcctagtttgtctgcagtgtaaaaaaaaattctagatggttcagaatttctgaccaattacaggaagttgaagCAGAGGAAAcaaatcagaggaaaaaaagaatcGGTGTTGTGCCAGAAACCAACCCCAAAACCATCCAGTTCTGACAATGCATCAAGTTAGCATTACATGCTAGGACGCAATTAGGATGCACACTTTATGAGACTATTTTTATATTCTGGTTTTAAGGTGGAGGAATAGTGCTCTGttaaataatgtagtaaatgAGCCGCCAACTACAATTGTGTAAAGGTTTTATAAGGGCTTTACAATGGCATTTAACAACATCCTATACTGAAGTCTAGCTATGCCTTTAAAAGCAaccatgttaatttttttttttacagcaaatcATTTTTACAGTGGAGTAATTACTGAAATTATAATCCTGTAATTTGACAGAATTTATGAATATGCTCAATTAATCTTGCAAAACTTAATTCAACAATGAGAGATTCATGAGTTCTTCATCTCCACCATCTCTACATGGTTCTTCAGGTGAATCCCCAGCATGACATcagttttacaaaacaaaaacttttttgGGCATGAAATTTTAGAGCAAACGACTTTGCTGGCAACCATATCCAACCTTGaagttgaaaaaaataagacttttaaaGACCTGACAGCACAACATATATCCCTTAAACTATAAAGCATTTCGCCCAGTTGCTTGATATTTATGGTTTAGGTTTTCTGTCAGCAATGTGGCTCATGGGAGGAGTCTCGTTTTTTGTCTGGAACTCTCAGATGATGCAATGCTGAAAGACACTGAAGAAGTCAGGcacactttttctctttctcaagacaaaaaaaaaaaagggaaacttGGAAAGCGTGGGCGGAGCCAACCTGGCGCACGAATCGTCTCttttaacagaataaaataaaccgGTGGCTCCTTCCAGACCACAGACTTCCTCAAGATGTTTACTGGAGAAAGCACTGCAGGAACACTGAAGAAGAAACGCAGTGCATTGATTGTACCCGATTCAAACCTGTACATCAATTGCTGTCTTTCAGTTTCTACCTGTTTTACCACTTTGGCAAGAATTGCGTTGTTGTAATGTTTTGCATGTGCAGCCGATGTACACGTTTCAATCGAGGCGACTCCAAAGCACTGTCGTTTTAAGTGAACGAACGCAATTCTACATAACTCAACGTCTTTACAGAACGTTTCAGCTGCTGgaactctctctgtctgttttctgtgaaggaCAGAAGCTGTGAAGATATCTCCATCTTTTTGTGCTAAATCAGTCTCCAAACTAAAGCACCTGTTTCTGATGTGATGTCTAGAGCTGAACAAAGCTGTTCTTGGATGTAATTGGAGTTGGTCTTTGTGAAGTATATGTTTCTCATTACCCTTTTTTCttggtgtttttgtttgtttttttttttttttatggttcttCCAGAGCAAGTGACGATAGGggagatttttattttgtttgtacaCATCGTTGTCATAATCTATTGTGTTTCAATAGAACATTTTTGATAATTAAAAGAGATGATTTTAGTGGATGCTGAA
>XM_022681363.1
AGTAGGAATAGTGATGATAAATCCCTAAGAAACAATATACTAAGTCTTACACTCATAGTTGTTTTGACATTTGCTAAAAACGTTTGACAGACattattttgggctagtttaagttTCTAAAGGGCGGGTTTcagactgactttgggctgaataattttgttggacctggcaaccctggacAGCACAAATAAGAatgagagagtgggagagagagacagttagagCACCTGAGAGATTTTAGCATGAAAAGCAAGCACATGTAAAAGTACTTTACTAGCTAAAGATGACGGGCACCACGCAGCAGAACTCCAAGGCCCAGCAGGTCCACATCTCAGCATCATCAACAGCTGGGACCACCCCGGTCAGTGTGACCCTCGACCCACAGGCACAGCTGGAGTCAGACAAACGGGCTGTTTACAGGCATCCTCTGTTCCCTCTGCTGGCTCTGCTTTTTGAGAAGTGTGAACAGGCCACACAGGGCTCCGAGTGCATCACCTCGGCCAGCTTTGACGTGGACATAGAAAACTTTGTGCACCAGCAGGAGCAGGACCACAAGCCTTTCTTTAGTGAGGACCCTGAACTGGACAACCTGATGGTGAAGGCGATTCAGGTGTTACGGATTCacctgctggagctggagaagGTGAATGAGCTCTGTAAAGACTTCTGCAATCGCTACATTACCTGCCTCAAGACGAAGATGCACAGTGACAATCTGCTACGCAATGACCTGGGAGGACCATACTCACCATCACACACAAACCTAccacagGAATTGCTGCAGAGCTCCTCTCCTTCGCTCTCCTCTGTGTCCAGCTCGGTTAACCCCTCAGGCATTGTGGTCCCTGCTTGCTCTCTGCCTCAGAGCAATGTGACAATGACCACCATCAACTCACAGGTGGTGTCAGGTGGAACCCTGTATCAGCCGGTTGCTATGGTGACCTCTCAGGGGCAGGTGTTAACCCAGAGTCTACCGCAGGGGACCATCCAGATCCAGAACACACAGGTGAATCTGGATCTCTCGTCCCTTTTGGACAGCGATGACAAGAAGTCCAAGAACAAGCGAGGCGTTCTCCCCAAACACGCCACCAACATCATGCGCTCCTGGCTCTTCCAGCACCTCATGCATCCGTACCCCACAGAAGATGAGAAAAGACAGATCGCAGCACAGACAAACCTCACCTTATTGCAAGTGAACAACTGgtttataaatgcCCGCAGGCGTATCCTGCAGCCCATGCTCGACGCCAGTAACCCTGACCCTGCCCCTAAAGCTAAGAAGATGAAGTCACAGCACAGACCCACGCAGCGCTTCTGGCCCGATTCCATCGTGGCTGGAGTTCTGCAGACGCACGGCCCACACTCTGCAGGCAACTCAGACAGTCCTTTGGGTTTGGACGGACTTCAGCCGCTGTCCTCTGACTCGGCCACCCTGGCTATGCAGCAGGCCATGCTGGCCGGGGCCGACGATTCCATGGACGGCACAGAGGATGACGAGGAGgacgaggaagaggaggaggaagggatGGAGGAGGacgaagaggaagaggaggaggaagatagtgagggagggaggcagCTGTCTGGAAGGAGAGATATGCGCCTTGATCACAGCGAGGCACTGGAGTAACTCACAGGAAATTACATCACTGGCCTGACacatcatgattttaattattttattttattttatttttttacatttcccaCAATTTACACTAAACCATTAAGAGCTTCGTATTATTCAGTTAAACACAGGAGGgcctttttgaaaaaaaaaaaagagattaagaAATAACAGGCTGTTCATaattacacactgtaaaaatgattCATTGTTGcctacaattttaagtttattcaaataataaaataaaacaacagaataTTTGTTACTGTTCTGCTATTTTACAACTGCGTGTCCAGTTCATCCTTGATATGGTAATCAagtaaaattagaataaaaggGACATTATAATACCTTTGTCAAGCCCTTACTAACCCTTAACAAGCCAGTTGTTATGTCATTAATAGGCTTTCTTTGGGTCCGAAACAAAGTAGCAGGTGTAAAAGTGGCAGTGAACTACGGTCCAGACCAAAGGACAAGAGTTTGGTCCGACCTAAAGATGTGGTCTCAGTCTGggtctactgaaccatggtctatcctagtttgtctgcagtgtaaaaaaaaattctagatggttcagaatttctgaccaattacaggaagttgaagCAGAGGAAAcaaatcagaggaaaaaaagaatcGGTGTTGTGCCAGAAACCAACCCCAAAACCATCCAGTTCTGACAATGCATCAAGTTAGCATTACATGCTAGGACGCAATTAGGATGCACACTTTATGAGACTATTTTTATATTCTGGTTTTAAGGTGGAGGAATAGTGCTCTGttaaataatgtagtaaatgAGCCGCCAACTACAATTGTGTAAAGGTTTTATAAGGGCTTTACAATGGCATTTAACAACATCCTATACTGAAGTCTAGCTATGCCTTTAAAAGCAaccatgttaatttttttttttacagcaaatcATTTTTACAGTGGAGTAATTACTGAAATTATAATCCTGTAATTTGACAGAATTTATGAATATGCTCAATTAATCTTGCAAAACTTAATTCAACAATGAGAGATTCATGAGTTCTTCATCTCCACCATCTCTACATGGTTCTTCAGGTGAATCCCCAGCATGACATcagttttacaaaacaaaaacttttttgGGCATGAAATTTTAGAGCAAACGACTTTGCTGGCAACCATATCCAACCTTGaagttgaaaaaaataagacttttaaaGACCTGACAGCACAACATATATCCCTTAAACTATAAAGCATTTCGCCCAGTTGCTTGATATTTATGGTTTAGGTTTTCTGTCAGCAATGTGGCTCATGGGAGGAGTCTCGTTTTTTGTCTGGAACTCTCAGATGATGCAATGCTGAAAGACACTGAAGAAGTCAGGcacactttttctctttctcaagacaaaaaaaaaaaagggaaacttGGAAAGCGTGGGCGGAGCCAACCTGGCGCACGAATCGTCTCttttaacagaataaaataaaccgGTGGCTCCTTCCAGACCACAGACTTCCTCAAGATGTTTACTGGAGAAAGCACTGCAGGAACACTGAAGAAGAAACGCAGTGCATTGATTGTACCCGATTCAAACCTGTACATCAATTGCTGTCTTTCAGTTTCTACCTGTTTTACCACTTTGGCAAGAATTGCGTTGTTGTAATGTTTTGCATGTGCAGCCGATGTACACGTTTCAATCGAGGCGACTCCAAAGCACTGTCGTTTTAAGTGAACGAACGCAATTCTACATAACTCAACGTCTTTACAGAACGTTTCAGCTGCTGgaactctctctgtctgttttctgtgaaggaCAGAAGCTGTGAAGATATCTCCATCTTTTTGTGCTAAATCAGTCTCCAAACTAAAGCACCTGTTTCTGATGTGATGTCTAGAGCTGAACAAAGCTGTTCTTGGATGTAATTGGAGTTGGTCTTTGTGAAGTATATGTTTCTCATTACCCTTTTTTCttggtgtttttgtttgtttttttttttttttatggttcttCCAGAGCAAGTGACGATAGGggagatttttattttgtttgtacaCATCGTTGTCATAATCTATTGTGTTTCAATAGAACATTTTTGATAATTAAAAGAGATGATTTTAGTGGATGCTGAA

Function

symbol description
pknox2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in forebrain; immature eye; and midbrain. Orthologous to human PKNOX2 (PBX/knotted 1 homeobox 2).

NR:

description
PREDICTED: homeobox protein PKNOX2 isoform X2

GO: NA

KEGG:

id description
K24891 PKNOX; homeobox protein PKNOX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681362.1 False 3586 mRNA 0.44 10 28954039 28998439
XM_022681363.1 True 3740 mRNA 0.43 10 28954039 28991641

Neighbor

gene id symbol gene type direction distance location
panx3 panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702 coding downstream 4123 28939591 ~ 28949916 (-)
LOC103039144 LOC108423784,LOC108277316 coding downstream 383934 28411012 ~ 28570105 (-)
LOC103041089 lim2.1,LOC103041089,LOC108423752,LOC107579014 coding downstream 1347756 27600092 ~ 27606283 (-)
bsx bsx,LOC107747047 coding downstream 1359515 27591571 ~ 27594524 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399,LOC107577081 coding downstream 1414329 27528660 ~ 27539710 (-)
robo3 robo3,LOC107751391,LOC107577175 coding upstream 160601 29159040 ~ 29364276 (-)
picalm picalm,LOC107744613 coding upstream 574215 29572654 ~ 29628399 (-)
cblb cblb,LOC107693962,LOC107576804,LOC107747038 coding upstream 1280657 30279096 ~ 30419086 (-)
crybg3 NA coding upstream 1679332 30677771 ~ 30733688 (-)
hlcs hlcs coding upstream 1803080 30801519 ~ 30848802 (-)
G179845 NA non-coding downstream 2359 28951464 ~ 28951680 (-)
G179843 NA non-coding downstream 20897 28915288 ~ 28933142 (-)
G179844 NA non-coding downstream 36977 28916682 ~ 28917062 (-)
G179842 NA non-coding downstream 41568 28912169 ~ 28912471 (-)
G179779 NA non-coding downstream 105295 28659992 ~ 28848744 (-)
LOC111195083 NA non-coding upstream 44050 29042489 ~ 29088959 (-)
G179913 NA non-coding upstream 507120 29505559 ~ 29505986 (-)
G179995 NA non-coding upstream 825404 29823843 ~ 29824092 (-)
G179996 NA non-coding upstream 825788 29824227 ~ 29824519 (-)
LOC111194987 NA non-coding upstream 888023 29886462 ~ 29904159 (-)
G179816 NA other downstream 102934 28850690 ~ 28851105 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 1387347 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 1428651 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 1429904 27523131 ~ 27524135 (-)
ift46 ift46 other downstream 1476061 27470086 ~ 27477978 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other upstream 1948507 30946946 ~ 30957767 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 2895763 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 3241740 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 3437886 32436325 ~ 32584343 (-)
LOC103033173 NA other upstream 4806801 33805240 ~ 33855632 (-)

Expression


Co-expression Network