msantd2 (msantd2,LOC107577222,LOC107588693)


Basic Information

Item Value
gene id msantd2
gene name msantd2,LOC107577222,LOC107588693
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 29415823 ~ 29421907 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681366.1
GCCGGCGCTCGAGCGGGCGCGCTCCTACGTCACGCCCCTTTtcccctcccccctccctccccttAGCAACAGAGCGACAGCAAGATGGCGGCCCCCAGTAACGCGGAGCGCTCTCCCGAGCCCTCGGCGCCGCTGAAGGCCCCCAAAACCGAGGCTCCGTCGCCGGATTCGGAGGACCTGAGCGACGGCAACCCGTACCACTCCAACTCCTCCACGCCCAGCCGCTTCTCCCCGCTGAATGTGGGCGTGTCGGCCGGGGCGGCAGGCCGGAGCGGCGCGGCCTCGGCTGCCTCTAACAGCTTCACGGTGTGCCGCGGAATGTCGTGGACGCCGTCCGAGACCAACGCGCTGATCGCCGTGTGGGGGAACGAGAGGCTGGCCGAGGCGCGGATGCAGCAGCTGGAGGTGGCGGGCACCGTGTTCTCCGGGAAAGCGCCCGGACCGGCCATGTACGAGCGGGTGTCCAGAGCCCTGGCGGAGCTGGGCTATGAGAGGACCCCGTCTCAGTGTCGAGAGAGGATGAAGACCCTGAGAAGATGCTACAGTCGCGTGAAGGAGCATGGTATCGGGAAACGAAAGAGCAGTTACTCCATCGAGCAGCTGGAGAAGGTGTTTGGGCAGGGTGGATGGGACTCCCAGAGCTGCCAGCCAGTCCTGATTAACAGCAGCGGCCTGTATCAGGAGATGGAGTCTGATGGCAGTACGATGGAGGACTACCCTCAGGAGGACTGGTGCAACCAGGACCTGTCTGCGGTCTTCCAGGAGGGGGAGATAGAGGCCGAGGAGATTCAGCTTCCAAAGAATAGAGTTCTACAGTTAAGACCAGAGGCCTCTGAGCATTCCCAACGCCAAGACCTAATGCAGAACGTAGTGCGCATCCTGGAGTCCGTGGAGGTCAAATGGGAGCACTTCCAGACGTGGACGGATTTCTCACGTCTTCACCTCTCCAACAAGTTGGCCATCTTCGGTGTGGGCTACAACACTCGCTGGCGTGAGGAAATCCGCTACCACTATGCTGAGATCAGCTCTCAGGTTCCTCTGGGAAAACGGCTGAGGGAGTACTTCAACCCTGAAAAGACAGAGGGCAGGGTCATCATGACCAAAGTGCAGAAGATGAactggaaaaatgtatattataagtTTTTGGACATCACGATTAGCGAAGCACGCTGCCTGGAGCTCCACATGGAAGTGGACTGGATCTATATTGCACAAACCAGCGCTTCAGGCTGCAGCAACGGCTCACAGTACCTCTTGCCAGGGGGCATACCGAAAACCTACGGTCTTTATGCTATCGGGTATGAGGAGAGGACAGGGACTAGCACCTCCAGCAGAGAAGACAATGGTTCCTCTTCTGGGGAAATAGAGACAGACCGTGGCGAGAAAAGGCGAAATAGGACATCAGCCAAAGTGACTTACTGCTACCGCATAGCGGAGGACCGCACCCTGCAGCAGTGCCTGGTCCAgcactttcaaagttcaggCAAACACTGCACTCGCGGTGAGCCCTCTGCCATCACCAGGTTCCTTCAGGAGAACTGCTCCGTCCGGCCCAAGGACGAGGACTCTTCTTCCAGCTTGCCAATGTACATTAAATTCATCGAGGTGGAGCTTGACTTTCTCTCTGCCGGGTCCTTGGTTGAATGTTTAGAAATCGCAATCGGGTATCCATTAAAGTTCAACAAGAAGGACAGCTTGTAACTGCTTGTTTTCCATTCACTTGGCCTAAAAGATGTACTTGACTAAAGTCTGTGTTGCACACCATATTGAAGAAATCTAGGCACCGGTCACCTCGTAATCTAGACTTTTCCGTCAGAAGAAAAGAACTGGTTAAAAACGTGTAGGATTTAGAAGCGGGCTGTTCAGTCTGGCTGTGTTTTCAGTCTAATTGACCAGACTGCAAATGTTCAGGAAGGCTGGTGTTTTTCCCTTGCAGTATTGCTTTATCAGGGAGTCTCGGGTCTCTTCAGGTTGaaatgagggagagaggggcagACGccctctctgttttaaaactgcCTTTATTTTTATCTATCCTACTACCAATGCATCAGAGGTTAAATGATACGAGTGTG

Function

symbol description
msantd2 Orthologous to human MSANTD2 (Myb/SANT DNA binding domain containing 2).

NR:

description
PREDICTED: myb/SANT-like DNA-binding domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681366.1 True 2075 mRNA 0.55 6 29415823 29421907

Neighbor

gene id symbol gene type direction distance location
robo4 robo4 coding upstream 267013 29108308 ~ 29148810 (+)
tmem218 tmem218 coding upstream 317031 29090621 ~ 29098792 (+)
LOC103040165 LOC108423783,LOC108277314,LOC107746996 coding upstream 1030728 27672949 ~ 28385095 (+)
c20h11orf63 NA coding upstream 1792158 27567728 ~ 27623665 (+)
LOC103043364 LOC107691633,LOC107751398,LOC108423781,LOC107693988,LOC107597532 coding upstream 1849247 27561863 ~ 27566576 (+)
esam NA coding downstream 6984 29428891 ~ 29503168 (+)
LOC103034698 v26bl,LOC108423787,LOC107588734,LOC107751386,LOC107691644,LOC105024202 coding downstream 88191 29510098 ~ 29516946 (+)
fez1 fez1,LOC107691643,LOC107751387 coding downstream 106407 29528314 ~ 29557162 (+)
ccdc83 NA coding downstream 140637 29562544 ~ 29573245 (+)
LOC103038052 zpld1,zpld1a,LOC103038052,LOC108276676,LOC107548885,LOC107693966 coding downstream 224785 29646692 ~ 29669237 (+)
LOC111195084 NA non-coding upstream 110426 29303039 ~ 29305397 (+)
G179872 NA non-coding upstream 114486 29300587 ~ 29301337 (+)
G179820 NA non-coding upstream 482683 28915333 ~ 28933140 (+)
G179819 NA non-coding upstream 503370 28912175 ~ 28912453 (+)
G179776 NA non-coding upstream 611116 28733121 ~ 28804707 (+)
G179901 NA non-coding downstream 83646 29505553 ~ 29505977 (+)
LOC111195086 NA non-coding downstream 206584 29628491 ~ 29640752 (+)
G179985 NA non-coding downstream 332324 29754231 ~ 29754625 (+)
G179989 NA non-coding downstream 373814 29795721 ~ 29796232 (+)
G179992 NA non-coding downstream 401020 29822927 ~ 29823261 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 1890382 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 2499479 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 2536740 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 4158354 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 4961201 24447792 ~ 24454622 (+)
G180235 erg other downstream 1717437 31139344 ~ 31151095 (+)
G180266 NA other downstream 2011291 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 2843091 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 3628335 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 4751017 34172924 ~ 34328970 (+)

Expression


Co-expression Network