Gene
RNA
| Item | Value |
|---|---|
| gene id | picalm |
| gene name | picalm,LOC107744613 |
| gene type | coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035916.1 |
| NCBI id | CM008319.1 |
| chromosome length | 36262418 |
| location | 29572654 ~ 29628399 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| picalm | Enables several functions, including clathrin heavy chain binding activity; low-density lipoprotein particle receptor binding activity; and small GTPase binding activity. Involved in several processes, including negative regulation of cellular protein localization; receptor-mediated endocytosis; and regulation of amyloid precursor protein catabolic process. Located in several cellular components, including clathrin-coated pit; cytoplasmic vesicle; and neurofibrillary tangle. Part of clathrin coat of coated pit. Implicated in acute myeloid leukemia. |
| id | name | namespace |
|---|---|---|
| GO:0048268 | clathrin coat assembly | biological_process |
| GO:0030118 | clathrin coat | cellular_component |
| GO:0005545 | 1-phosphatidylinositol binding | molecular_function |
| GO:0030276 | clathrin binding | molecular_function |
| id | description |
|---|---|
| K20044 | PICALM; phosphatidylinositol-binding clathrin assembly protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_022681369.1 | True | 4157 | mRNA | 0.48 | 26 | 29572654 | 29628398 |
| XM_022681370.1 | False | 4152 | mRNA | 0.48 | 26 | 29572654 | 29628399 |
| XM_022681371.1 | False | 4138 | mRNA | 0.48 | 25 | 29572654 | 29628391 |
| XM_022681372.1 | False | 4139 | mRNA | 0.48 | 26 | 29572654 | 29628392 |
| XM_022681373.1 | False | 4126 | mRNA | 0.48 | 25 | 29572654 | 29628391 |
| XM_022681374.1 | False | 4118 | mRNA | 0.48 | 26 | 29572654 | 29628392 |
| XM_022681375.1 | False | 4111 | mRNA | 0.48 | 25 | 29572654 | 29628388 |
| XM_022681376.1 | False | 4121 | mRNA | 0.49 | 26 | 29572654 | 29628398 |
| XM_022681377.1 | False | 4090 | mRNA | 0.49 | 25 | 29572654 | 29628388 |
| XM_022681378.1 | False | 4043 | mRNA | 0.48 | 25 | 29572654 | 29628389 |
| XM_022681379.1 | False | 4066 | mRNA | 0.48 | 25 | 29572654 | 29628391 |
| XM_022681380.1 | False | 3979 | mRNA | 0.48 | 24 | 29572654 | 29628382 |
| XM_022681381.1 | False | 3901 | mRNA | 0.48 | 24 | 29572654 | 29628382 |
| XM_022681382.1 | False | 3813 | mRNA | 0.49 | 22 | 29572654 | 29628369 |
| XM_022681383.1 | False | 3818 | mRNA | 0.48 | 23 | 29572654 | 29628380 |
| XM_022681384.1 | False | 3800 | mRNA | 0.48 | 22 | 29572654 | 29628374 |
| XM_022681385.1 | False | 3784 | mRNA | 0.48 | 22 | 29572654 | 29628370 |
| XM_022681386.1 | False | 3770 | mRNA | 0.48 | 21 | 29572654 | 29628368 |
| XM_022681387.1 | False | 3763 | mRNA | 0.48 | 22 | 29572654 | 29628370 |
| XM_022681388.1 | False | 3756 | mRNA | 0.48 | 21 | 29572654 | 29628366 |
| XM_022681389.1 | False | 3735 | mRNA | 0.48 | 21 | 29572654 | 29628366 |
| XM_022681390.1 | False | 4095 | mRNA | 0.48 | 24 | 29572654 | 29628384 |
| XM_022681391.1 | False | 4123 | mRNA | 0.48 | 25 | 29572654 | 29628388 |
| XM_022681392.1 | False | 4110 | mRNA | 0.48 | 24 | 29572654 | 29628387 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| robo3 | robo3,LOC107751391,LOC107577175 | coding | downstream | 208378 | 29159040 ~ 29364276 (-) |
| pknox2 | pknox2,LOC107691639,LOC106567647,LOC106603668 | coding | downstream | 574215 | 28954039 ~ 28998439 (-) |
| panx3 | panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702 | coding | downstream | 622738 | 28939591 ~ 28949916 (-) |
| LOC103039144 | LOC108423784,LOC108277316 | coding | downstream | 1002549 | 28411012 ~ 28570105 (-) |
| LOC103041089 | lim2.1,LOC103041089,LOC108423752,LOC107579014 | coding | downstream | 1966371 | 27600092 ~ 27606283 (-) |
| cblb | cblb,LOC107693962,LOC107576804,LOC107747038 | coding | upstream | 650697 | 30279096 ~ 30419086 (-) |
| crybg3 | NA | coding | upstream | 1049372 | 30677771 ~ 30733688 (-) |
| hlcs | hlcs | coding | upstream | 1173120 | 30801519 ~ 30848802 (-) |
| pigp | NA | coding | upstream | 1229358 | 30857757 ~ 30875590 (-) |
| dscr3 | dscr3 | coding | upstream | 1297769 | 30926168 ~ 30932814 (-) |
| G179913 | NA | non-coding | downstream | 66668 | 29505559 ~ 29505986 (-) |
| LOC111195083 | NA | non-coding | downstream | 483695 | 29042489 ~ 29088959 (-) |
| G179837 | NA | non-coding | downstream | 484059 | 28954049 ~ 29088595 (-) |
| G179848 | NA | non-coding | downstream | 581527 | 28990613 ~ 28991127 (-) |
| G179845 | NA | non-coding | downstream | 620974 | 28951464 ~ 28951680 (-) |
| G179995 | NA | non-coding | upstream | 195444 | 29823843 ~ 29824092 (-) |
| G179996 | NA | non-coding | upstream | 195828 | 29824227 ~ 29824519 (-) |
| LOC111194987 | NA | non-coding | upstream | 258063 | 29886462 ~ 29904159 (-) |
| G180002 | NA | non-coding | upstream | 275417 | 29903816 ~ 29905018 (-) |
| G180007 | NA | non-coding | upstream | 281657 | 29910056 ~ 29910315 (-) |
| G179816 | NA | other | downstream | 721549 | 28850690 ~ 28851105 (-) |
| G179578 | LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 | other | downstream | 2005962 | 27561845 ~ 27566692 (-) |
| G179583 | zgc:101846,LOC106525086,LOC108416226,LOC101161532 | other | downstream | 2047266 | 27524328 ~ 27525388 (-) |
| LOC103038646 | zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 | other | downstream | 2048519 | 27523131 ~ 27524135 (-) |
| ift46 | ift46 | other | downstream | 2094676 | 27470086 ~ 27477978 (-) |
| G180188 | dyrk1a,LOC108411986,LOC107572954 | other | upstream | 1318547 | 30946946 ~ 30957767 (-) |
| LOC103030555 | LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 | other | upstream | 2265803 | 31894202 ~ 32071924 (-) |
| tmem135 | tmem135,LOC107701128,LOC107718730 | other | upstream | 2611780 | 32240179 ~ 32262598 (-) |
| tiam1 | tiam1,LOC108423828,LOC107718732 | other | upstream | 2807926 | 32436325 ~ 32584343 (-) |
| LOC103033173 | NA | other | upstream | 4176841 | 33805240 ~ 33855632 (-) |
