LOC103038990



Basic Information


Item Value
gene id LOC103038990
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 29701362 ~ 29717879 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022681393.1
GGAAGAGAAGGAGTAATAAAGGTGTGTAATTTCAATGAGTGCCCTTGGGGAAGTACCGTGGTAGCCTGTTGACAAAGAGTTGGTCTCATATGCTGGACTGAAGAGGCTGCCACATTAAAGGAATGACCTTATTTTCGTCCTTGCTTTGTCCCGGCCCTCCCGGACGTCCTTTAAAACAGTGTATCATATAGTCAAGGATCAAAAGTTGAGGATAAGCAGGGAAAAGGTCCAGGCTGAAGACGAGTTAAAGAAGAGTTGGAAAGAAGATGCTCCTGTCTTTGATCTTCCTGTCCTTTGGTGTTTCCACTGTTAGCGGTCAGTTAACGGCTGCTGACTGCTCTTCATACATGAGAAGACCAGAATACACAGATATAGAGGTAGACTGTGGCACTGATTACATGGGCCTGGCCATCCAGCTGTGTCCAGTGGTCTACACAGGTTACAATGAGTCTTTGCTCTTTATCAACAACATAATGGATGACCCAGCCTGCAAAGGCACTGTGGATACGTCCGTCGCTCCTCCAGTTCTCCGCTTCAGATTCCCCATCAATGAGGCATCAGGCTGTGGCAGCAAGTTCAAGACCATCAGCACTCCGGGCACAGGACTATTCTCAGAGTTCTCCAGCGTCGAGACAGTAAACATCAGCGGCGTGGTGCGATCGTATGACCCCACACAAGGCGTAGTGACATTTAATGCCGAGCTGAAGTACTTTTACTCATGTGCCTATCCTCTGGAGTACCTGATCAACAACACACAGCTGGATGTGTCAGCCACCTCTGTTGCAGTGAAGGATGGCAATGGCAGTTTCATCAGCACCCTAAGCCTCCGGCTCTTCAGCGATGCAAACTTCACCAGACCCCTGATCATTCCCCGAATTGGGATCCAGCTCAGGACCCATGTATTTGTGCAGGTCCATGCGAGCAATCTTACCTCCCAGTACTTTGTGTTACTAGACCGGTGTTTCGCTTCTCTTGCAGTCGACCCAGAGAACTCCACCTACCACAACCTCTTTGTGCCctgctttGCTGACGAGATGATCAGAATGATTGAAAATGGTGTGAGCGATCAAGCGCGATTTTCCTTCCCGGCTTTCCGCTTCTTAGAGCAACAGAACCAAACGGTTTCTAGATACTACCTCCACTGCATTACACGACTGTGTGAAATGATGACCTGCGTAACATACAGGATGTGTCTCAAtggcaggaggaggagggattTGAGCTATGATTCTTCTCTTAACAATGGACTGTCAGAATCTGCCACCATCACTTCTCCTGTCATCATTACCAGAGCTGACACCGAAACAGCATctgTTCCATCCAACACACAAGATTCATCAGGCACTAAGACGAGCTCTGCTTCTTCGGCTGCGCTGGGAGTGGGCGTGGGTATAGTGCTGTTCCTCAGCATTTTGATTATCGGTGTAGCTGCAGTTTACGCCAAGAGACTCTTACACTCTACAGCTTCAAGACTGTTTTAAGGCTAAAAGCACTACATAACAAACCACATCATAGCAGACCTGCTGCAGCCAACAACCAATGGTGAAGTCAACACATTTACATAGTaatgaaaaaaaggttttgttctGTCTCTTGTAttgaaaagagaaaacagtATCCAGCATATCGCCACGGTCATGCCAAAGCTTGTGAAttacgtatttatttattttcacttttttactattaatatttcaaattgtacactgtgccaacatttcaTGCATATATGATGAAATGTATTTTCATTTCAATTTACTATCAGCAATGTGACATCATTTCATGAGGATTTTCCTTTACAATATTTGTGTTGAACTGCATCAGAAAGCTAATGTGAAAGAACTGAAATTAACAATTTTGCACTACATTTTActataagaataaataaacacaagaaaATTGTTTCTAGTAAATCACtgt

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022681393.1 True 1920 mRNA 0.45 11 29701362 29717879

Neighbor


gene id symbol gene type direction distance location
LOC103038373 NA coding upstream 9867 29683230 ~ 29691495 (+)
LOC103038052 zpld1,zpld1a,LOC103038052,LOC108276676,LOC107548885,LOC107693966 coding upstream 32125 29646692 ~ 29669237 (+)
ccdc83 NA coding upstream 128117 29562544 ~ 29573245 (+)
fez1 fez1,LOC107691643,LOC107751387 coding upstream 144200 29528314 ~ 29557162 (+)
LOC103034698 v26bl,LOC108423787,LOC107588734,LOC107751386,LOC107691644,LOC105024202 coding upstream 184416 29510098 ~ 29516946 (+)
alcam NA coding downstream 415315 30133194 ~ 30268718 (+)
bbx bbx coding downstream 786166 30504045 ~ 30560931 (+)
LOC103035352 NA coding downstream 873979 30591858 ~ 30615583 (+)
LOC107196917 NA coding downstream 899721 30617600 ~ 30628614 (+)
LOC103034395 NA coding downstream 925024 30642903 ~ 30647778 (+)
LOC111195086 NA non-coding upstream 60610 29628491 ~ 29640752 (+)
G179901 NA non-coding upstream 195385 29505553 ~ 29505977 (+)
LOC111195084 NA non-coding upstream 395965 29303039 ~ 29305397 (+)
G179872 NA non-coding upstream 400025 29300587 ~ 29301337 (+)
G179820 NA non-coding upstream 768222 28915333 ~ 28933140 (+)
G179985 NA non-coding downstream 36352 29754231 ~ 29754625 (+)
G179989 NA non-coding downstream 77842 29795721 ~ 29796232 (+)
G179992 NA non-coding downstream 105048 29822927 ~ 29823261 (+)
G180022 NA non-coding downstream 409351 30127230 ~ 30127650 (+)
G180026 NA non-coding downstream 443353 30161232 ~ 30162112 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 2175921 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 2785018 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 2822279 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 4443893 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 5246740 24447792 ~ 24454622 (+)
G180235 erg other downstream 1421465 31139344 ~ 31151095 (+)
G180266 NA other downstream 1715319 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 2547119 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 3332363 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 4455045 34172924 ~ 34328970 (+)

Expression



Co-expression Network