ripply3


Basic Information

Item Value
gene id ripply3
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 30850265 ~ 30854155 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681409.1
GAAAGGAGGTGGGGGAAACAGCTATAAGAGGAGGTTTTCTCCTCTCCACTCTCTCAGTCTGAGCTCTGGCCTGGAGAGAGAAGATGCTTCCACACACACTGACCGGGGTCTCATCACCTGGACACTTCAACACTCAGGAGCCTGGAAGAGTCATGGGTCATATAACTGGTTCTCCAGTGATGTGGAGACCATGGGCGCTTCACTCTGATAGAGATGCACAGCATGAAAAGACTACTattggaacacacacacagaccccaaAGAATATAAATGGGTTCCATCACCCAGTGAGGTTGTATCTGCCCAAATCCAAGACCGAGGTGTATTTGTCTCATCTGGGAAAGAAAGTTCTGGCCAGCTTTCCTGTTCAAGCTACTCTGCACTTCTACAACGACGACTCCAGCTCtgaggaggagagtgagaacGAAGAGGAGATGATGGAGAAAGAGTGGCAGCTTTCAGTGAAGAGGACGACCTAAAGGACATCTGTCTAGAACTAACAGAGACGAACAGAGAACTTAATTCTTGAAAAACTTTTGGCTAGGTTTTACCTTTGACAAGAAACACCTTGCAGCCAGTGGTACCAACGACACCATGGACAAATCTCTGCTGTTCGGTTCATCTTGACCAGGACATTAAACCTGAGCTCATCAAGTTATTACTCTGGTCATCACCACTGGCATTCATCCCAGAGCAATCAAATATGGGACCAATCTTGAGGCCTCATGTGCTACATAGTTGCTTCAACAGGGTTCTACTCTACTATGGGGTTCTATTCTAGCCTGTATTGTCAATGGACAATCATCATGCTCAATTATCTTCTATAAAAgcttaaacagtttttaagggTTTAAGCACATCTGATTTAATGTGTCCTTTGGTTTACCAGGATACAACCAGTTTAAATGTTGCACCCTATCAGATATTGTTACGTTTTGCTTTTTAAATCATACACTCTTAGCATAAAGGGTTTTATATCACACCAAAATATGCCATATAAACCAAGCAGCTAGGTGAGTGATGAAGATGAGGGTGGTGATGGGGTGGACGCAGGTGTGAGGTCGATATTCACTAGGTGAGGAGGGACTGGGAGGTATATATAGGACTAGAAAAAGGAGGTGCAGTTCCATATCTCAAAGTTTTGTTaattctttagaaaaaaaaaaaacgtgttaaTTCCAGTTAATTTAACCCAGatagtgttcattttacactgGCAAACATACTGTGTATAAGAAAACAAGGCAGTGATCCTGGATCAGTACTATCTAAATTCTGAATTTTGTTGATCCTGTTGTAtcaaaagatcataaaaaacacatttcttatGTCCTTGAATGTTCCAAAGTGGTTTGGAGCCAAATATTGCTATTGTAATGGACATTAACCTTAAGAACAGTTTTCCTTCCTTCTTGTCCATTTTTGGAGGCACCATGTTTTGACAGAGATGATATAACACAATTTTGTGCACCagatttaagcaataatacactcaaggttcatgctataatgtgtaatattggcactgctgtgctgccaTAATGACAGTATTAGTGTTagagcacaaacctcgagtgtattatcgctgtttattgaaagattttgagttaaagaggatgagaaaatatgataatatgaactgtttggttataaagactcagcgagttaaaatagtttaattgcTGCTCAGTTTGTAGCAGCacagtttggtttgtaagcgctgcatcattgctaggttacctgtatgtggcagagtaatacatggagagcttaggttacagtgcattaccggctgataatgtcactcatacaacgcctctcagccaatcacattgcagggtctgaactaactgtggtataatagtgTTTAATCCATAGCTCAGCTCATCTTTACGGCTTGTTGAACATCTGGAGACCTTGACATCTTTTTATATTGTATGAATGACTGATCTTCCATAGGATGGATCCATTGACTTAGGAAAGGAAACTGTGATATTTCAGCTTATGATCTCCACACTGGCAGTTGGTGACCTAACCTAAGGGTTAGTGGTCTATATGTATACGTACATACATGTTGAAGTAGTGGTTAGGTCTGTTGAAACACGAGGCCTGTAATTTGACTTGACTTGCTTACTATTTCTTTCCTTCACTGGATCTGGAGATGGTGCTTCAGCATATCTCCAGCATATACTCACAATaagaaaggaagaagaagagtcTGCTGTTTTGGAAACAAGCTTATGAAAGAGCAGGAGATCATGCTAGCATGTCTCAGGAAGCAGCCTGGGTGGAAGCAGGAGAGGATTAGAACCTGAGACTTGAGCAGGAAACACAGCGGAACTGAAACAGCTCCTACAGGACCGTACAGCTCTGATCCTGTTTACCCAAGCAGAGCATAAACACACCTTTAACCCGAACCTGACTCACAACATCCGCCTCTCACACCAGCACACGCGTAGGGCTCCGCTTCGGTTCGTTAAAAGCAGTGGAGATTATGGGTTATAGTTACAATAAGTCTAAATATTTCTCTCATCTCTCATGAACATAAATTTTGTAGACCCTAATATaaaaccctgtgggactccgcATCATGTGTAAAACTGCAATAACTTCAAAAAggttctaaaatgttttttttatgcaatagGGCAATGGAGTGGAGTGTGTTTCGGTGTTTGtcattgtactgtatatttctta

Function

NR:

description
PREDICTED: protein ripply3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681409.1 True 2700 mRNA 0.41 4 30850265 30854155

Neighbor

gene id symbol gene type direction distance location
sim2 sim2,LOC106603444,LOC107572951,LOC107676491 coding upstream 59528 30761463 ~ 30790737 (+)
riox2 mina coding upstream 175487 30657193 ~ 30674778 (+)
tiprl tiprl,LOC106603731 coding upstream 196077 30649447 ~ 30654188 (+)
LOC103034395 NA coding upstream 202487 30642903 ~ 30647778 (+)
LOC107196917 NA coding upstream 221651 30617600 ~ 30628614 (+)
ttc3 NA coding downstream 22374 30876529 ~ 30924949 (+)
dyrk1a dyrk1a,dyrk1aa,LOC108411986,LOC107676490 coding downstream 81102 30935257 ~ 30950930 (+)
kcnj15 kcnj15 coding downstream 257860 31112015 ~ 31116695 (+)
ets2 ets2 coding downstream 383633 31237788 ~ 31244884 (+)
mpzl1 LOC108423808 coding downstream 440910 31295065 ~ 31314439 (+)
G180152 NA non-coding upstream 47391 30798994 ~ 30802874 (+)
G180102 crybg3 non-coding upstream 168868 30677868 ~ 30681397 (+)
LOC111194988 NA non-coding upstream 215164 30634150 ~ 30635101 (+)
G180096 NA non-coding upstream 268408 30576057 ~ 30581857 (+)
G180079 NA non-coding upstream 302294 30541824 ~ 30547971 (+)
G180166 NA non-coding downstream 60461 30914616 ~ 30915150 (+)
G180167 NA non-coding downstream 72050 30926205 ~ 30927334 (+)
G180173 kcnj6,LOC107744206 non-coding downstream 109846 30964001 ~ 30973699 (+)
G180174 NA non-coding downstream 130857 30985012 ~ 30985241 (+)
G180228 NA non-coding downstream 242218 31096373 ~ 31097005 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 3324824 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 3933921 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 3971182 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 5592796 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 6395643 24447792 ~ 24454622 (+)
G180235 erg other downstream 285189 31139344 ~ 31151095 (+)
G180266 NA other downstream 579043 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 1410843 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 2196087 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 3318769 34172924 ~ 34328970 (+)

Expression


Co-expression Network