LOC103021309 (dclk1,LOC107728871,LOC107577778)


Basic Information

Item Value
gene id LOC103021309
gene name dclk1,LOC107728871,LOC107577778
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35075014 ~ 35164372 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681478.1
GCAGCCTCCCCACtctctcagcagcagcagcagcagcagcgcaggAGGAGAACAAACACACCGGATAACAGAGCTTTTACAGCGGCCAGGATCACGACCTGCAGCCCGGCAGCCCGGAGGAGCCTCATTTACACAGCTTTAACCTCCAGTCTCTGTTTCAGACTCTGCACTCTTACCTTTGGGACGAAATGGAGGAGCATTTCGATGAGAGGGACAAAGCTGAGCGGAAAGGCCGTGGCAGTTCGCGGGCTAACGGGCTGCCCAGTCCCACCCACAGTGCCCACTGCAGCCTGTACCGCACACGGACCCTCAGGGCTCTTAGCTCGGAGAAGAGGGCCAAGAAGGTGCGGTTCTATCGTAATGGAGACCGCTACTTCCATGGCATCGTGTATGCAGTGTCCTCTGACAGGTTCAGGTCATTCGATGCCCTGCTGGCCGACCTCACGCGTATGCTGGCCGACAACGTGAACCTGCCTCAGGGGGTCCGGACCATCTACACCATAGATGGTGCCaaaaagatcaccagcatcgaGCAGCTGGTTGAGGGAGAGAGTTATGTGTGTGGGTCTATTGAGGCCTTTAAAACGCTTAACTACACCAAGAACATCAACCCCAACTGGTCTGTGAATGTGAAGGCCTCTGCGACCTCCAGGTGTCCTCCATCACTGTCCAGCTCTAAAACAGGGCCAAATGAAGCTAAAGAGATCAAAGACTTCATCAGGCCAAAACTGGTCACCATCGTACGCAGTGGGGTGAAGCCGCGCAAAGCCGTGCGCATCCTGCTCAACAAGAAGACGGCGCACTCGTTCGAACAGGTCCTTACCGACATCACGGACGCCATAAAGCTCGACTCTGGAGTTGTCAAGAGGATTTACACTCTGGAAGGAAAGCAGATCACATGTCTTCAGGACTTCTTTGGCGACGAGGACATCTTCATTGCGTGTGGACCTGAAAAGTTCCGCTACCAGGACGACTTCCTGCTGGACGAGAGCGAATGCAGGCTGATGAAATCATCCCCCTATGGAAAAACTCTATTAAGCAGAGGATCTCCCAGGAGCGTGGTGCTGGCCAGGCACAGCAAGTCTCCCTCTGGATCAGTGAACGGGACTCCAGCCAGCCAGCTGTCCACTCCTCACTCCATGAAGTCACCAAGCCCCTCCCCTCCCAGTCCAGGGAGTCTCAAAAAGCTCAAGGGCTCAGACCAGAACGGCTCCTCTGCCTCGCTGGCCTCTACAAAGGTGTGCAGCCTGGATGAGGGCGAAGGGCCTGTCAGTGATGCCGAGCCagtggaggaaagcacagcccCTGCGGTCCCAGCTTCCATCTCCGACCGCTACAGAGTGGGACGCATGATCGGCGATGGCAATTTTGCAGTAGTGCATGAATGTGTGGAGCGCTCCACGGGCCGAGCATACGCTCTCAAAATCATCAACAAAGGCAAATGCAGAGGGAAAGagcaaatgatccagaatgaagTCGCTATCCTGCGGAGAGTAAAGCACCCTAACGTCGTCCTGCTGATTGAGGAGATGGACACCTACAGTGAGCTCTACTTGGTCATGGAGCTTGTCAAGGGGGGTGATCTCTTTGATGCCATTACCTCTGCTACCAGATACACAGAGAGGGATGCCAGCGGCATGCTTTATAACCTGGCCAATGCCATTAAATATCTACACAGCCTTAACATTGTCCACAGAGACATCAAGCCAGAGAACCTTTTGgtttatgagCACCAGGATGGAAGCAAATCTCTAAAGCTGGGAGACTTTGGCTTGGCGACAGTGGTGGACGGACCGCTGTACACTGTCTGTGGAACACCCACATATGTAGCACCTGAAATCATTGCAGAGACTGGTTATGGCCTTAAAGTGGACATATGGGCAGCTGGAGTCATCACATATATCCTACTGTGTGGCTTTCCACCGTTCCGTGGAAGCACAGAGGACCAGGAAGCTCTTTTTGACCAGATTCTGCTCGGTCAGATAGAATTCCCTCTCCCATACTGGGATAATGTATCCGACTCAGCAAAAGAGCTGATTACGTCTATGCTGCAGGTGGAGGTGGATCAGAGATACACAGCTCTACAGGTGCTAGAACATCCCTGGGTCACTAATGATGGCCTATCGGAGAATGAGCACCAGCTGTCAGTGGCAGGAAAGATCAAGAAGCACTTTAACACTGGCCCCAAGCCCAGCTGCACCACGCCGGGAGTGGATGTTATCACGCTTGACCCAGAGTTTTGCATCCAGAGATCAGGGTCATTGGACTTCTACCAGCATCCGGGAATGTACTGGATAAGacCACCACTCTTGATAAGACGTGGCAGATTTTCAGACGAGGACGCCACCAGAATGTGAGCGCGGCGCCAAGGTTTACCCAGCCATCCTGTAGCCTCCCAGCCCTTCTTCCGGCCCccagtctctgtctctccaGTCTCTCGCTCTCCAGCTGTTCCCACCTCGCCCCCCCCCGGCTGCTGCTCCACACTCTTCCCGGCCACCTCCACGCCTGAGTCTGAAGACTTTTCTGCCTGCTCTGCTC
>XM_022681479.1
CGCCCTTTTCATTCATTGCGCTCGCACTTGGAGCCTCAGTTCGCTGCCACTTTCCCCAAACTGCCTCTCGGATTAAGCACTGTGTCCTCAGCATGCTGCAGTACGAAGTGAACGGGACTCCAGCCAGCCAGCTGTCCACTCCTCACTCCATGAAGTCACCAAGCCCCTCCCCTCCCAGTCCAGGGAGTCTCAAAAAGCTCAAGGGCTCAGACCAGAACGGCTCCTCTGCCTCGCTGGCCTCTACAAAGGTGTGCAGCCTGGATGAGGGCGAAGGGCCTGTCAGTGATGCCGAGCCagtggaggaaagcacagcccCTGCGGTCCCAGCTTCCATCTCCGACCGCTACAGAGTGGGACGCATGATCGGCGATGGCAATTTTGCAGTAGTGCATGAATGTGTGGAGCGCTCCACGGGCCGAGCATACGCTCTCAAAATCATCAACAAAGGCAAATGCAGAGGGAAAGagcaaatgatccagaatgaagTCGCTATCCTGCGGAGAGTAAAGCACCCTAACGTCGTCCTGCTGATTGAGGAGATGGACACCTACAGTGAGCTCTACTTGGTCATGGAGCTTGTCAAGGGGGGTGATCTCTTTGATGCCATTACCTCTGCTACCAGATACACAGAGAGGGATGCCAGCGGCATGCTTTATAACCTGGCCAATGCCATTAAATATCTACACAGCCTTAACATTGTCCACAGAGACATCAAGCCAGAGAACCTTTTGgtttatgagCACCAGGATGGAAGCAAATCTCTAAAGCTGGGAGACTTTGGCTTGGCGACAGTGGTGGACGGACCGCTGTACACTGTCTGTGGAACACCCACATATGTAGCACCTGAAATCATTGCAGAGACTGGTTATGGCCTTAAAGTGGACATATGGGCAGCTGGAGTCATCACATATATCCTACTGTGTGGCTTTCCACCGTTCCGTGGAAGCACAGAGGACCAGGAAGCTCTTTTTGACCAGATTCTGCTCGGTCAGATAGAATTCCCTCTCCCATACTGGGATAATGTATCCGACTCAGCAAAAGAGCTGATTACGTCTATGCTGCAGGTGGAGGTGGATCAGAGATACACAGCTCTACAGGTGCTAGAACATCCCTGGGTCACTAATGATGGCCTATCGGAGAATGAGCACCAGCTGTCAGTGGCAGGAAAGATCAAGAAGCACTTTAACACTGGCCCCAAGCCCAGCTGCACCACGCCGGGAGTGGATGTTATCACGCTTGACCCAGAGTTTTGCATCCAGAGATCAGGGTCATTGGACTTCTACCAGCATCCGGGAATGTACTGGATAAGacCACCACTCTTGATAAGACGTGGCAGATTTTCAGACGAGGACGCCACCAGAATGTGAGCGCGGCGCCAAGGTTTACCCAGCCATCCTGTAGCCTCCCAGCCCTTCTTCCGGCCCccagtctctgtctctccaGTCTCTCGCTCTCCAGCTGTTCCCACCTCGCCCCCCCCCGGCTGCTGCTCCACACTCTTCCCGGCCACCTCCACGCCTGAGTCTGAAGACTTTTCTGCCTGCTCTGCTC

Function

symbol description
dclk1 Predicted to enable protein kinase activity. Involved in response to virus. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: serine/threonine-protein kinase DCLK1 isoform X2

GO: NA

KEGG:

id description
K08805 DCLK1_2; doublecortin-like kinase 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681478.1 True 2541 mRNA 0.54 17 35075014 35164372
XM_022681479.1 False 1551 mRNA 0.54 13 35075014 35095298

Neighbor

gene id symbol gene type direction distance location
rfc3 rfc3,LOC107589808,LOC107728889 coding downstream 534937 34533174 ~ 34540077 (-)
zar1l NA coding downstream 564255 34508459 ~ 34510759 (-)
hunk hunk,LOC108423838,LOC107734458,LOC107577711,LOC107691675,LOC104954747 coding downstream 1073554 33987072 ~ 34001460 (-)
eva1c NA coding downstream 1139218 33921364 ~ 33935796 (-)
LOC107197575 NA coding downstream 1239460 33833945 ~ 33835554 (-)
LOC111195093 NA coding upstream 5414 35169786 ~ 35180741 (-)
spart NA coding upstream 17026 35181398 ~ 35204110 (-)
ccna1 ccna1 coding upstream 40785 35205157 ~ 35210765 (-)
smad9 smad9,LOC107728873 coding upstream 75076 35239448 ~ 35251025 (-)
alg5 alg5,LOC102793295 coding upstream 90402 35254774 ~ 35269308 (-)
G181307 NA non-coding downstream 4705 35068121 ~ 35070309 (-)
G181287 NA non-coding downstream 42550 35027736 ~ 35032464 (-)
G181283 NA non-coding downstream 54420 35018049 ~ 35020594 (-)
G181268 NA non-coding downstream 58358 34956188 ~ 35016656 (-)
G181252 NA non-coding downstream 129593 34914225 ~ 34945421 (-)
G181305 NA non-coding upstream 3800 35168172 ~ 35169153 (-)
G181460 NA non-coding upstream 62147 35226519 ~ 35227227 (-)
G181441 rfxap,sertm1 non-coding upstream 67961 35232333 ~ 35234658 (-)
G181465 NA non-coding upstream 119042 35283414 ~ 35316181 (-)
G181466 NA non-coding upstream 126222 35290594 ~ 35351206 (-)
LOC103033173 NA other downstream 1219382 33805240 ~ 33855632 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other downstream 2490671 32436325 ~ 32584343 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 2812416 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 3003090 31894202 ~ 32071924 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 4117247 30946946 ~ 30957767 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 268860 35433232 ~ 35470789 (-)

Expression


Co-expression Network