spart


Basic Information

Item Value
gene id spart
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35181398 ~ 35204110 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681482.1
ACTTCATTAGTCATCTGAAAGCGAGGCGCGCGCGGACGGATGGGAGATGAAACAGAGCTGAGGAGTTTTCTAAAGAGTTGCCACCCTGGAAGCTCTGAGCTCTGAAGGCAGAAATGGAAGCTCTTGAGCCCGCTGAGCTGCAGCTCATCAAGAACCACTATGAGAAAGCGTATGAATGCCTCAGCATGGGACTGAGGGAGGATGAATCGGGGAACAAAGGCCGAGCTGTGGTGCTGTATCGTCTGGGCCGCCGCCACCTCCTCCAGGGTCTGGAGGTGCGCACCACTGGTGAACGGTGTGTGGGAGCTGTCTGGGAATCTGCTCGCCAGTTGCAGCTGAAGATGAACGAGAGCCTCAGCAACATCACCACTCGGCTGGCTGTGCTGGAGACCACCACAGGCCCAGGGGCCACAGGGGCCCAGGCGCTTTATCCAAACCTGTCTTTCCTCCAGGAGCCTTGTAGACCTGCCAGTGCTAAGAGGCCCCATGCTAACAGGAGGCTGTCCCCCACAGCTTCTGGAGGTGTTCCTTATCTGCCAACCTCCCCAAACACAGCCTCAGATGTACCCAGTGAGCTGCCCCCAGCATACACCCCTCAGCCCACAGACGGGCACCTCTCACTTTCTCCAAGACCAAATCAGGGTCCCCGCCAACAGAGTTTGACAGAGAGTGGCGAGGATCTCTTGTTTCTGCCACACGGGGTGCAGATATTCTTTGTGACGGCCGATGGCCAGGTCAGCACTCCTTTATATCCGGGATATCTCCGTATCTTCTTAAACAGCAAGCAGAATCGGGACAGCAGTGACTGCAGACATCCTCCGGCTTACTTACAGGTGTGTGATTGGCTCTACCCACTGTTTCCTGACTCGCCTGTCCTGCTTAGCAACACTGGTGTGTTCACATTCcctgataccacagcaacagtGCCGGGGTCCTGCGTCGGCGTGGTGCTGTCCCCAGAGCTGCCTGCAGCGGACAGAGCTCTCTTCCAGGAACACCTTTCAGTTCTTACGCAGCTCAGAGTACAGCCTGAAGATGTTGAATCAGATGAACCTACAAGGATGGACACCGTTAACCTGAGTGAAAAGGCTCTCAACGATTCTGCAGATGAGACAGACCTAGAACAAGCAAAAGAGGAGAAGGTCTTGCCTGAATGGAGTGAGAAGATGTCACAGGGCATTCTGGCAGGGGCTTCGTGGCTCAGTCGAGGACTTGTGCAGGGAGCAGAGGCCACAGGAAAAGCCATTTCGAAAGGAGCCACAAAACTGCGTGAACACATGACCCCGGAGGAAACACCGGCGGAGGTCAACCCCAGGGTCACCAGGGGTCTGCAGGTAGCCAAGCAGGCCACAGGGGGCGCGGCCAAAGTCAGTAATTTTTTGGTTGGTGGCCTCTCCTCTGTGGTTGAACTTGTGGGCAAGGAGCTGACTCCTCACGTCAAAAAGCATGGCAGCAAACTCATCCCAGAATCCTTTAAGACAAATAAAGAAGCCTGCGCCAACATGGGTGGAGCCAAAGCGGTGGCAGCAAGTAGCCTAAAAGGTTTGTCAACCATATGGTCAGGTCTGGAGACGGCGGCGAAGACAGTCGGTAAAAGCGCCAGCTCTGAGACGGTGCAGACTGTGAAGCACAAGTATGGGGATCAGGCCAGCCAGGCTACAGACACTGCTGTCCAATCAGTGCTCAATGTGGGCGTCACAGCCTTCAACATAGACAACTTTGGCCTGAAGGCTGTACTGAAGGGTGCAGGGAAGCAGACCGCAAAAGCCATACAAGAGGAGGACAACCCCACAGAGCTGGAGCCACAACCAGAGTCGGAGAAGACACCTAAacaagagaagaaagagaaaaattaaGATGCTGTTAATGGGACACCATTCGCTCTTACAGAAATgtgtaatgcacacaaatgtattttacagtattcTTACTGTAGTAACTCTTACAGTTTACTAataatattttggatatgtgTTGAAAGGTTCTACTCGTGATAATCATTCTTTactgcatttatttaatttactgctTTACTTATGAATTAATAGTGTTTCGGTCAAAAGCTATCTGATATGCAGTGTTGGAAGGGtcactttaaaaatgtattccgttatagattactgattacctgtaaaagaaaatgaaactgTAACAAATCCAAAGGATAACTTTATTACAGTAATGTAATTGCTTTCTTTTACTTATTAAATACTTGCATTTTTAAAGCCATATATAAGACATACATTCAAATAAAGTTAACAGAGTTAATAAAGAAATTATTACACGTTGagtaatataaaa

Function

GO: NA

KEGG:

id description
K19366 SPG20; spartin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681482.1 True 2301 mRNA 0.50 9 35181398 35204110

Neighbor

gene id symbol gene type direction distance location
LOC111195093 NA coding downstream 657 35169786 ~ 35180741 (-)
LOC103021309 dclk1,LOC107728871,LOC107577778 coding downstream 17026 35075014 ~ 35164372 (-)
rfc3 rfc3,LOC107589808,LOC107728889 coding downstream 641321 34533174 ~ 34540077 (-)
zar1l NA coding downstream 670639 34508459 ~ 34510759 (-)
hunk hunk,LOC108423838,LOC107734458,LOC107577711,LOC107691675,LOC104954747 coding downstream 1179938 33987072 ~ 34001460 (-)
ccna1 ccna1 coding upstream 1047 35205157 ~ 35210765 (-)
smad9 smad9,LOC107728873 coding upstream 35338 35239448 ~ 35251025 (-)
alg5 alg5,LOC102793295 coding upstream 50664 35254774 ~ 35269308 (-)
supt20h supt20h coding upstream 72430 35276540 ~ 35303385 (-)
c20h21orf91 cunh21orf91 coding upstream 104889 35308999 ~ 35349619 (-)
G181305 NA non-coding downstream 12245 35168172 ~ 35169153 (-)
G181315 NA non-coding downstream 22572 35156578 ~ 35158826 (-)
G181307 NA non-coding downstream 111089 35068121 ~ 35070309 (-)
G181287 NA non-coding downstream 148934 35027736 ~ 35032464 (-)
G181283 NA non-coding downstream 160804 35018049 ~ 35020594 (-)
G181460 NA non-coding upstream 22409 35226519 ~ 35227227 (-)
G181441 rfxap,sertm1 non-coding upstream 28223 35232333 ~ 35234658 (-)
G181465 NA non-coding upstream 79304 35283414 ~ 35316181 (-)
G181466 NA non-coding upstream 86484 35290594 ~ 35351206 (-)
G181479 NA non-coding upstream 195068 35399178 ~ 35402926 (-)
LOC103033173 NA other downstream 1325766 33805240 ~ 33855632 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other downstream 2597055 32436325 ~ 32584343 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 2918800 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 3109474 31894202 ~ 32071924 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 4223631 30946946 ~ 30957767 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 229122 35433232 ~ 35470789 (-)

Expression


Co-expression Network