alg5 (alg5,LOC102793295)


Basic Information

Item Value
gene id alg5
gene name alg5,LOC102793295
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35254774 ~ 35269308 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681483.1
ATGTGGAGCAGCGGCGGGTCATTTCCGCAGTGCTGTTTCACTGTGAGGTGGAAGAACTTCAGCCATGGCGTTTTAATACCGGTTATAACTCCTGTTCACTCCCCCCTATGAGCGGGCTGTAGTTGCGGGGTGTCTCTGGGCTgtgagaggaagaggatgatggtgatgatgatggatcagtgtgtgtgtcagatcctcCAGGTCGCTGCAGCTCTGCTCCTGCTCCTCTTACTCCTGGTTATTGTAATTGCCCACGTTACAGCCAGCATGGTGGACCAGACGCGTGCAGAGCAGGAGAAATATTTTCTGACAGCTTCAGGAAACAAGGAGCCATTCCCTAGTCTGTTTGACCCCCATTCAAGAGAGCTGTCTGTAGTAGTGCCGTCCTACAACGAGGAGTCCAGATTACCTGTTATGATGGAAGAAGCCATGCAGTATTTAGAGAAAAGACAGAAGAAGAGTTCATCATTCACCTATGAAGTCGTGATAGTTGATGATGGCAGCAAAGACAAAACTACTGAGgTTGCCTTAGGGTACACAAAGAAGTACGGAGCAGACAAAGTGCGGGTACTGACGCTACAGAAGAACCGTGGTAAAGGAGGTGCTGTGCGGATGGGCACGCTGAGCTCTCGTGGCCGTCTCATTCTGATGGCGGATGCTGATGGTGCCACAAAATTTGAAGATCTTGAGAAGGTGGAGGCTGGATTAGAAAACATCAGCCCAAAGCCGGAGAACATGGCTATCGCCTGTGGCTCCAGGGCTCACCTGGAACAAGAATCGGTTGCTCAGCGCTCCTTCTTCCGAACAGTTCTGATGTATGGGTTCCACTTCCTGGTGTGGTTCTTCTGTGTGAAGGGGATCAAGGACACACAGTGTGGGTTTAAGCTCTTTACTCGTGAAGCTGCTCTGAGGACCTTCAGCAGTCTGCATGTGGAGCGCTGgGCGTTTGATGTGGAGCTCCTGTATGTAGCTCAGTGCTTACAAATACCTATAGCTGAAGTGGCGGTCAACTGGACAGAGATTGAAGGGTCAAAGCTGGTGCCGTTTTGGAGCTGGCTACAGATGGGTCGAGATCTAGTCTTCATTAGACTACGTTACATCACTGGTGCCTGGAAACTGGAGTCCCCCAAAAAAAACCAGTAGCCTTTGCTGCAGTTGGCTTGTGCATGCACATGCAGTGGATCATGCATAGAACACCCATGCCATCCCCACAGCTGGCAGACAGCGGCACAGTTTGCATCATAGTGACCAAGAATACCACGCTGTGTATTAATCTGATCTTTTTATTATGTCACGATTTTGCCCAGGTGTACTGTAATTTTTTCCATACATTTTTGCTGGGAGGGTCCTGAATGATGTGTATAGATTTTCATTTAAAGAACACTTAAAAGTGTTCAGCCaaataaatgaacatttaatata

Function

symbol description
alg5 Predicted to enable dolichyl-phosphate beta-glucosyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human ALG5 (ALG5 dolichyl-phosphate beta-glucosyltransferase).

NR:

description
dolichyl-phosphate beta-glucosyltransferase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00729 ALG5; dolichyl-phosphate beta-glucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681483.1 True 1422 mRNA 0.49 10 35254774 35269308

Neighbor

gene id symbol gene type direction distance location
smad9 smad9,LOC107728873 coding downstream 3749 35239448 ~ 35251025 (-)
ccna1 ccna1 coding downstream 44009 35205157 ~ 35210765 (-)
spart NA coding downstream 50664 35181398 ~ 35204110 (-)
LOC111195093 NA coding downstream 74033 35169786 ~ 35180741 (-)
LOC103021309 dclk1,LOC107728871,LOC107577778 coding downstream 90402 35075014 ~ 35164372 (-)
supt20h supt20h coding upstream 7232 35276540 ~ 35303385 (-)
c20h21orf91 cunh21orf91 coding upstream 39691 35308999 ~ 35349619 (-)
ripk4 ripk4,LOC107577855 coding upstream 96977 35366285 ~ 35394225 (-)
pom121c pom121c coding upstream 135446 35404754 ~ 35418511 (-)
smg8 smg8,LOC107686170,LOC107589184,LOC107577889 coding upstream 202778 35472086 ~ 35477772 (-)
G181441 rfxap,sertm1 non-coding downstream 20116 35232333 ~ 35234658 (-)
G181460 NA non-coding downstream 27547 35226519 ~ 35227227 (-)
G181305 NA non-coding downstream 85621 35168172 ~ 35169153 (-)
G181315 NA non-coding downstream 95948 35156578 ~ 35158826 (-)
G181307 NA non-coding downstream 184465 35068121 ~ 35070309 (-)
G181465 NA non-coding upstream 14106 35283414 ~ 35316181 (-)
G181466 NA non-coding upstream 21286 35290594 ~ 35351206 (-)
G181479 NA non-coding upstream 129870 35399178 ~ 35402926 (-)
G181480 NA non-coding upstream 141111 35410419 ~ 35450392 (-)
G181489 NA non-coding upstream 194956 35464264 ~ 35533212 (-)
LOC103033173 NA other downstream 1399142 33805240 ~ 33855632 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other downstream 2670431 32436325 ~ 32584343 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 2992176 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 3182850 31894202 ~ 32071924 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 4297007 30946946 ~ 30957767 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 163924 35433232 ~ 35470789 (-)

Expression


Co-expression Network