LOC111195094


Basic Information

Item Value
gene id LOC111195094
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35359733 ~ 35363752 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681490.1
TCCATGATAACGGATGTTTACAGGTGTTGTGATTTAAATCCGATGCTTATTGTTCACACCTGGAGAAAGGCCTGTTCGCTGCATCGCTCCTTCCAGACAACTATCTTTCTGAAGAGGATGTGCTGTTAACAGCTAACGGATCAGATGAAAGATGAATTCCACAAACATGCCAGACAACTTTCTGACTCAGAGGCTGAATGTAGAAGAACAGCTACAGGGAGGATGGCATTACAGTGCTGCTCAATATTCCAACACGTTTATGGTGGAGCCTCATGCTCACCAGATGCCCTACCAGATATGCTGCACTGACTATCTCCACAGTGCCCCTAGCTGGTTGCCATTCGGGGGCCTTCATCATTATGGTCAGTTCATGTCACAGTGGTTCTACAATTCCCAGGGAATGGTATATCACCCTGCATACCCTTACTATGGATACCAGACATCACTGGAAACAAGCCATGAAGTTGTTGATGCAACCAGCTTTCATTATCAGACATTACATCAGCCGAACTTTGCCTCAGACCAGGGAATTAACGATGATGTCTCTATGGTTCCATCGTTTGTAGAGGTACCACATCTTGCTGTAATTCACACCGGTGGACTGGATCTCGCATACAACCTTTCCACCAGGGCACAGGTTCCTGCTCACCTTACTTACCATGATCTTCAGAGGTTTGGTGATAGAAGATTAGTTTTCCCTGTCCCACATCCCTCATTGCCTGAGGTCACATCCCCTGAGGACATATCAGAGATTCATCAGCGTCCTGTAGAACCTGTAGAGTTTGGAGATGCCTGTGCAGACACAGGGTCAATGAGATTTCACAGGTTTCACCCCCTGGAAATAGAAAATCACTCCTCACAGCACGTATACCCGGAGGCCTGTACTGAGCACTtcccagagagagcagagtTCTGTGATGGCCCTGTTTCTGCTGCATCTGAAGCATCACCAACCATGAATTTACTCAATTCTATGTGCCAAGCTAACCCTGACTTTCACAACAATTTAACTTTTAACAATTGGTCAGGCTCAGCGTACCCAACATTTCCTGAGGTCGCATCCCTGGAAGACAATACAAGTTTCTTCCAGTGTGAGAATGAGACTTATCAGCCTCCTGTAGAAGCAGAGTTTGAAGAAGCCAGTGTGGACTTACGATCAATGGGATTTTACTCCTGGGCAACTCAAGATCATTACTCAGACAGTGCAGACAGAGTGGCCAGTCGAGTCGAGTGCAGTGATGGTTTTGTTTTAACAACAGAAGCAGTTCATACTCATTATGATCAACCATGCCATGCTCAAACTGACTTTAAGGACCTTAACAATTGGTCGATCTCAGTGGACCCAATGTTTCCTGAGGTTACATCCCTAGGGAATTCCATGATGTTCTTGCAATGTGATCCTGAGGCTGAAATATTAGAGACTTATCTGCCTCCTGCAAAGGCAGAGTTTGCAGAAGCCTGTCCAGAACCAGGATCAATGGGATTTGAGGACTCGATGGACTATAAAGAGCACTttccagagagagcacagttctgcGACGGTCTTATTTCTACAACAGAAGCAGATTCTACTCATTATAATCAACCATGCCTTGCTACAACTGACTTTAAGGACCTTAACCTTTGGTCAGACTCACTGGAAGATACCACAGAGTTCTTTAAATGTGAGCCTGAGACTGAAATATCAATGATTTCTCAGCCACCTGTAGAAGTAGAACTTGGAGAAGCCTGTGCTGACACAGAGTCAATGAGAGTTCACCAAACAATGACTCAAGATCACTTCTCAGACCATGCAGACCTGGTGGATGGTACTGAGCACTTCCAGGAGCGAGCAGAGTTCTGCGATGGCCCTGTTTCTACAACAGAAGCAATTACTACTCAGTATGATCAACCGTGCCATGCTCAAACTGACTTTAAGGACCTTAACATTTGGTCAGACTCACTGGAACCAACATGTCCTGAGGTCACAGCCCTGGATGATACCACAGAGCTCTTTCAGTGTGAGCCTGAGGCTGAAACATCAGACATTTCTCAGCTTTCTGTAAAGCCAGAGTTTGGAGAAGCCTGTGCTGAAACAGGGTCAATGAGAGTTCACCACACAATGACTCAAGATCACTTCTCAGACCATGCAGACTGTACTGAGCACCTCCAGGAGCGAGCAGAGTTCTGCGATGGTATTGTTCCTACAACAGAAGCAGCTAAAACTACTAACCCAGACCTTCAGAACCATAACAATGAGTCAGGCACACTAAAGGACCTAAAGCATCCTGAGGTCACACCCCTAAAAGACTCCATGAGCTTATGTAAGATTTCCCAGCCTCCTGTAGAAGAATCTGAGCCAATGCAGATATAAGGGGAGAGATTATCCCCCTGAGACTAAAGATTTATAGACCTGTAAATAGTTCTGTGATAGCCGTACATTTCTGTGATAGCTGTTTATCATATTGcattatatatttgatattgaaATAAAGTCAAGTTCATGTTCACAGGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681490.1 True 2496 mRNA 0.45 2 35359733 35363752

Neighbor

gene id symbol gene type direction distance location
exosc8 exosc8,LOC107577834,LOC107697412 coding upstream 83106 35270958 ~ 35276627 (+)
rfxap rfxap coding upstream 120308 35233840 ~ 35239425 (+)
sertm1 sertm1 coding upstream 126785 35222688 ~ 35232948 (+)
nbea nbeaa,nbea,LOC107691681 coding upstream 289410 34775714 ~ 35070323 (+)
stard13 stard13,LOC108415386 coding upstream 633012 34545763 ~ 34726721 (+)
styxl1 NA coding downstream 124850 35488602 ~ 35495295 (+)
LOC103023179 tmem120a,LOC108276692,LOC107728827,LOC107579123 coding downstream 134574 35498326 ~ 35504763 (+)
LOC103023494 LOC107577900,LOC108442441 coding downstream 154419 35518171 ~ 35541791 (+)
LOC103043521 adgrg2 coding downstream 194176 35557928 ~ 35596246 (+)
LOC103023820 NA coding downstream 244020 35607772 ~ 35618274 (+)
G181372 NA non-coding upstream 34569 35324910 ~ 35325164 (+)
G181351 NA non-coding upstream 43406 35283550 ~ 35316327 (+)
G181345 alg5,LOC102793295 non-coding upstream 90450 35254934 ~ 35269283 (+)
G181331 NA non-coding upstream 127715 35201816 ~ 35232018 (+)
G181332 ccna1 non-coding upstream 148834 35205152 ~ 35210899 (+)
G181390 NA non-coding downstream 44828 35408580 ~ 35410364 (+)
G181408 NA non-coding downstream 106953 35470705 ~ 35471932 (+)
G181413 NA non-coding downstream 118534 35482286 ~ 35482622 (+)
G181415 NA non-coding downstream 120349 35484101 ~ 35488468 (+)
G181424 NA non-coding downstream 178596 35542348 ~ 35544216 (+)
LOC103024954 LOC108423745 other upstream 852409 34334576 ~ 34507324 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other upstream 1030763 34172924 ~ 34328970 (+)
ufm1 ufm1,LOC107701138 other upstream 2291801 33050242 ~ 33067932 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other upstream 3085935 32264998 ~ 32273798 (+)
G180266 NA other upstream 3925824 31433198 ~ 31433909 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 28769 35392521 ~ 35403624 (+)
LOC107197592 NA other downstream 236731 35600483 ~ 35607593 (+)
LOC103044041 NA other downstream 321252 35685004 ~ 35702995 (+)
LOC103024766 zdhhc20a,LOC107589301,LOC107743391,LOC107686182,LOC107728865,LOC107697429,LOC108411113,LOC108276908 other downstream 452283 35816035 ~ 35842871 (+)
G181734 NA other downstream 842815 36206567 ~ 36209854 (+)

Expression


Co-expression Network