LOC103023179 (tmem120a,LOC108276692,LOC107728827,LOC107579123)


Basic Information

Item Value
gene id LOC103023179
gene name tmem120a,LOC108276692,LOC107728827,LOC107579123
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35498326 ~ 35504763 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681496.1
aggagaggaggaaggcGGTAACGTGACGTCGGGTCTCTCTACATGACTTTATGCTGAGACCAGAGCGGtgactgagagacagacagacagagaaacagtcagacagacagcgCATGACTCTCATTAAAGCAGAGAGCTGAATAAGAAGAAGTTAACTAACTACATTGGAGCggaaggaggagaaggaggacaGCAGACCGTTAACTTAGCTATCAGACATCTCCGCTTATCTAACTCTCTTTTAGACAGATATAATCATAAACATAGCTGGAAGTCTTCAGTCCAGAACACTCGAGCTATGTTATTTAGTCCAGACTCTTTAAACGAGTGCTTACAGGAATGGAAAGATCTGGAAAAGGACTACCAACAGGTCCAGGAGACCCACCGCATGTACAAACAGAAGCTGGAAGAGGTTTCAAAACTGCAATCTAGCTGTTCAGCCTCCATTACTCGGCAGAAGAAGAGGCTAAAGGAGCTCTCTGACTCTCTTGAAGAatGCAGACAGAAAGGGAACCCAGAGGACATTAGGGAGGTAGAATTGATCCAGGAATCCATTAACGAAAggccaaatgtgttttttgagatgGAAGCTTTTCTTCCAAAGAAGAACGGGTTATACCTCAGTCTCGTTCTTGGAAATGTGAATGTTACACTCCTTAACACACAGTCAAAGTTTGCCTATAAAGATGAATATGAGAAGTTTAAGCTCTACCTGACTGTGATCCTTCTACTTTTCTCCTTCACGTGCCGATTTATAGTCAGCTATAGaGTGGTAGATGCATTGTTCAATTTCCTGTTGGTGTGGTATTACTGCACCCTGACGATACGAGAGAGCATTCTCATTAATAACGGCTCAAaGATCAAGGGGTGGTGGGTATTTCAACATTATGTCTCAACTTTCCTCTCTGGTGTAATGCTGACTTGGCCCGAAGGAGAGCTCTATCAGATGTTTAGGAATCAGTTCCTGTCCTACTCCATGTATATAAATTTTGTACAGTTTCTTCAATACTACTATCAGAGTGGCTGCCTTTACCGGCTTCGTGCCCTGGGAGAGAGACACAACATGGACCTCACAGTTGAGGGCTTTCAGTCCTGGATGTGGAGAGGCCTGGCATTTCTGTTGCCTTTCCTTTTCTTTGGTCATttTTGGCAACTTTACAATGGAATTACACTTTTCCAAATGGCCCAGCTGCCTGAATGGAAAGAGTGGCAGGTGCTTATGTGTGCATCCACATTCCTTGTGCTGTTCATGGGGAATTTCTTCACAACCCTCGGTGCAGTTtaccaaaaatacacaaatcagGACAAAGCAAAAGATTTATGAATGTCAAACATAAATCTACAGACATCAGGATCACTCCATGTATTCAATGAAATCTGTCcacaatgtattttatataaatgttttaaattatctTAGTTGTATTGTCTGTTATTGTATGTTGTTTGTGTTTCGGGTTGCAGAATGTGGTCCAGTGTGCTTTCACCTGttcatatttattgttttattattaaatgtgtgcAGATGTCAGATTTAATGATGAATGTTAATGCACTCCAAATCAAAAGGGACaaaatacattcattca

Function

symbol description
tmem120a Predicted to enable ion channel activity. Predicted to be involved in detection of mechanical stimulus involved in sensory perception of pain; fat cell differentiation; and ion transmembrane transport. Predicted to act upstream of or within ion transport. Predicted to be located in plasma membrane. Predicted to be active in membrane. Is expressed in prechordal plate. Orthologous to human TMEM120A (transmembrane protein 120A).

NR:

description
PREDICTED: transmembrane protein 120A

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681496.1 True 1589 mRNA 0.42 12 35498326 35504763

Neighbor

gene id symbol gene type direction distance location
styxl1 NA coding upstream 3031 35488602 ~ 35495295 (+)
LOC111195094 NA coding upstream 134574 35359733 ~ 35363752 (+)
exosc8 exosc8,LOC107577834,LOC107697412 coding upstream 221699 35270958 ~ 35276627 (+)
rfxap rfxap coding upstream 258901 35233840 ~ 35239425 (+)
sertm1 sertm1 coding upstream 265378 35222688 ~ 35232948 (+)
LOC103023494 LOC107577900,LOC108442441 coding downstream 13408 35518171 ~ 35541791 (+)
LOC103043521 adgrg2 coding downstream 53165 35557928 ~ 35596246 (+)
LOC103023820 NA coding downstream 103009 35607772 ~ 35618274 (+)
LOC111194993 NA coding downstream 117336 35622099 ~ 35629462 (+)
LOC103024448 LOC108413536 coding downstream 232202 35736965 ~ 35789237 (+)
G181415 NA non-coding upstream 9858 35484101 ~ 35488468 (+)
G181413 NA non-coding upstream 15704 35482286 ~ 35482622 (+)
G181408 NA non-coding upstream 26394 35470705 ~ 35471932 (+)
G181390 NA non-coding upstream 87962 35408580 ~ 35410364 (+)
G181372 NA non-coding upstream 173162 35324910 ~ 35325164 (+)
G181424 NA non-coding downstream 37585 35542348 ~ 35544216 (+)
G181439 NA non-coding downstream 125408 35630171 ~ 35631951 (+)
G181556 NA non-coding downstream 282338 35787101 ~ 35792691 (+)
G181586 NA non-coding downstream 356438 35861201 ~ 35901409 (+)
G181605 NA non-coding downstream 416982 35921745 ~ 35922340 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other upstream 94702 35392521 ~ 35403624 (+)
LOC103024954 LOC108423745 other upstream 991002 34334576 ~ 34507324 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other upstream 1169356 34172924 ~ 34328970 (+)
ufm1 ufm1,LOC107701138 other upstream 2430394 33050242 ~ 33067932 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other upstream 3224528 32264998 ~ 32273798 (+)
LOC107197592 NA other downstream 95720 35600483 ~ 35607593 (+)
LOC103044041 NA other downstream 180241 35685004 ~ 35702995 (+)
LOC103024766 zdhhc20a,LOC107589301,LOC107743391,LOC107686182,LOC107728865,LOC107697429,LOC108411113,LOC108276908 other downstream 311272 35816035 ~ 35842871 (+)
G181734 NA other downstream 701804 36206567 ~ 36209854 (+)

Expression


Co-expression Network