rhbdd2


Basic Information

Item Value
gene id rhbdd2
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35542319 ~ 35552188 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681505.1
CCTGAACCctccttttttctcattttctcagagCGGAAGTGTTGAACTGCGGTGTTTATCTTTATGCGCAGTGCAGCTTTATCACCGGGTTCTGGGTTTGATACACTACAGTAATGCTGTGAACATTTTCACACAGCCGGTAAAATGCGCTGGGACGCGGTGAGTACAGGGCTGCGGGGGGTTTCACAGGCCGTGTCTGAGCTGGAGTTTAGCGGCGGGATCGCGCTGGTGGTCGCGGTGTCCTCCGCCCTGAGTATCGCTTCCGGTTACCTGCAGCTCTCCccccagctcctcagcctgGACTCCAACCTGGTGCTCAGCCTCCACGTCCACAAACTCATCACATACAGCTTCTACCATAAGGGTTTGGGGCACCTCGTCATTTGTGTTGGTGTGCTGGTGTTCTTCTGCAGCGGTTTAGAGAAAGGAGTTGGAACGGTGCGTTTTCTACACCAGCTCCTCCTTCTCTCCACCTGTGTTGGCTTACTGCACGTCCCcctggagctgctgctgttttctccAACATCCAGGAGCTCTGTTTCTGGCCTAATCCCAGTTTCTCTTGCTGTACTGGGCATGGTGACCATCAGTTCTCGCATGCGGAAGGCACTGCTGATGGGTGTAAATGTGCCTACTGCATCTGTTCCCTGGCTCCTCCTGCTTTTGATCACGCTCTTCATCCCAAACACTGTGCTCCTCTGCAATGTTATGGCGGTAGTAGTAGGAGAGATGTATGGTATGGGATGGTTTTCACTGTTGGAAATGTCCGAGTCTAAAGCATGCGTGCTTGAGAAGAAAATGCCATTCAGGTTGCTGAAGAAGATCCCATGTGTGCAGTTTGTTCCTGCATCTGCCGAGGAGCGAAAAAAGACCCTACATGCAGTATGTAACCCTCCGCCAGGCTCATACCCTGTTCAGGCCTATGCTCCAGCACCGATGTCCCCTCCTCAAGCTCCAGGAAGTCTACCCAGCAGTCTAGACGGCTGGCCCTACGCAGCCTACGCTCAGCAGAACTACACGGTGCCTTCACCGTACTCTGGGTATGGTATCGGGCACAGTGTTGGATCTAGCCACGGACACAGCCATGGTGGGCATGCCTGTGGGCATTCTCATGGACACAGTCATCAGCATCAGACCAGCAGTTCTTGGACTCCAGTGGCTTCCCATGCCCATTCTCATTTCAGCCCTCCTGTAAACATGGATGCACAGTCTTTTGTTAACCTGCCACAGGTAACGGTACAGTCAGGCTCTCAATCTCCTCACTTACAGACCCTCTCacagcctgctgctgctgcttctgtgcTGCCTTCTGGACCTACCAGCTATGGACATTAAATCTGAACAGAAACCTGAAGCCCTGGTTCTTCTCCTCAGTCCTGAGCAGGACCTTCTCCAACTCAGGTTTCAGGTTACAGATTTCTCAGTTATTAACAAAAAATTTGGCATAAGTTAATTCTCTGTTTTTTATGCAAGTACTGTCTTGCTTTTTTAATCTAAAGCCTGTTTTGTATTTctagttgaatttttaaaaacactttattgcTGGTTGGAAGTGATATGTGACTGAAAAGGTTAAAGTACAGTTACTACAGGTGCTTCTGcatttataaagtgttttttttttttttttacaaattagtTTATATTCCTTTTTAAAGTGGGGGTATATTACAAAAGAGGATTTCTGAGTTAACTGTACAGCATAAACCAAAGTCAAATAGCAGAAGTGGTCTGCCCTGTTTTACGCTTTACTTAGAAATTTTGTCAAGCACCCCTTTCAAACAGTCTTCACAATCTGTATTGCCACTGACTGCAAGAACATTAGCTAATTACTAACTACTAAACATTCACTTATGATATTGGTGCTACGTATCATTATGaatgaatgtgtatgtgtgcagaTATACAGTCAAATCCATACGTTCTGTCTTTTTGGGCTCAAAATTATGcgaaaatgtatttatgaacAGTTTTATGGATAGGTGTGGCCTGTTTTCACATTATACAGTGACAAATTGGAACAAAATAGAAGAACTGGAGTTAATTCTAAATGTGCACTTGGTATTTGTTCATAGGAACTTTCAAAATCCGGTCCAAAGTGATGATAATGTAAGCAAggcctagaaaaaaaaaaacataaaggcaAAACAAACCTATAAGTAAGATTGTAGAAATTACAGGAGTATTTAGTTTATTCTTCAAAGACAGTACTGCACTGGCAAACATCAGCCACGTCAGAAAACCAAGAATACCTCTAAAGCCCCTTTTTAAGGTTAATAATCGCAGAATTCACCGAATTTCGCTTACACAAAGTGCATTTAGTCTGGTCAAGAACATTCTAGAGGAGGTTGGCACATCATTGTCAAAGTCAAATTCAAGCCATGTCACACAATTTGTCTTTGGATAGATAAAAACAAGATTAACTAGTGTATGGGAAAGCAAAGGAAGGGTTCATAATCTGAACTGAAGCACACCAAGTCATCTATCAAACATGCTGACAGCACTGTTGCAGCATGGGCTTACATGGCTGCAAGTGAAACTGGGTCACTGGTGTTTACTATTAGATGTGTCAACTAATACAAGCAGCAGGATGGATTCTGAAGTGTATAGATCTTAATGCTGAGCAGCActacactgtatatatgtataattgcCCAAAAAAGCAGAAAGAGCAAAAAGTGTCTCAAGCCAAAGAAATGTAATGTTTGTTAATGGCCGAGTCAGCCACCTGGCTTTAACCCACTTGAACATGATTTTCATTATAAATAAACTTGACTGTGTAAGTCTCA

Function

NR:

description
rhomboid domain-containing protein 2

GO: NA

KEGG:

id description
K09652 RHBDD2, RHBDL7; rhomboid domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681505.1 True 2789 mRNA 0.44 4 35542319 35552188

Neighbor

gene id symbol gene type direction distance location
prr11 NA coding downstream 53814 35480295 ~ 35488505 (-)
smg8 smg8,LOC107686170,LOC107589184,LOC107577889 coding downstream 64547 35472086 ~ 35477772 (-)
pom121c pom121c coding downstream 123808 35404754 ~ 35418511 (-)
ripk4 ripk4,LOC107577855 coding downstream 148094 35366285 ~ 35394225 (-)
c20h21orf91 cunh21orf91 coding downstream 192700 35308999 ~ 35349619 (-)
LOC103044945 gabrr3,gabrr3a,LOC107589257,LOC107697425,LOC107686176,LOC106603079,LOC106563567 coding upstream 85817 35638005 ~ 35674164 (-)
LOC103045257 LOC108411116 coding upstream 254544 35806732 ~ 35810671 (-)
smg6 NA coding upstream 294202 35846390 ~ 35873586 (-)
ovca2 ovca2 coding upstream 353496 35905684 ~ 35942719 (-)
LOC111194994 atp6v0a1,LOC108444241,LOC107567567 coding upstream 694185 36246373 ~ 36253870 (-)
G181510 pora,LOC108442441,LOC107577900,LOC107589225 non-coding downstream 5551 35535736 ~ 35536768 (-)
G181489 NA non-coding downstream 9107 35464264 ~ 35533212 (-)
G181491 NA non-coding downstream 74692 35466008 ~ 35467627 (-)
G181480 NA non-coding downstream 91927 35410419 ~ 35450392 (-)
G181479 NA non-coding downstream 139393 35399178 ~ 35402926 (-)
G181519 NA non-coding upstream 21742 35573930 ~ 35574384 (-)
G181529 NA non-coding upstream 46336 35598524 ~ 35598765 (-)
G181533 NA non-coding upstream 54704 35606892 ~ 35607986 (-)
G181540 NA non-coding upstream 65694 35617882 ~ 35625755 (-)
G181541 NA non-coding upstream 70472 35622660 ~ 35624687 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other downstream 71530 35433232 ~ 35470789 (-)
LOC103033173 NA other downstream 1686687 33805240 ~ 33855632 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other downstream 2957976 32436325 ~ 32584343 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other downstream 3279721 32240179 ~ 32262598 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other downstream 3470395 31894202 ~ 32071924 (-)

Expression


Co-expression Network