LOC103024448 (LOC108413536)


Basic Information

Item Value
gene id LOC103024448
gene name LOC108413536
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 35736965 ~ 35789237 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681509.1
gtgtggagagagtgtgtggagagCCATAAGGCTGTGCAGCTTTGACTATTACCTCCCTCCTCCAGTTCCCTTTGTCATGCTAAAtcagcaacagagagagagtcgGGGCAGTTCATCACAGAGCTGAGCAGCGTGAATGGGACAAAACAAAGCGAGGGAGTACACTGCGTCCGACTGAATCTGACTTCTGCTTCAGGGATCTAGACGAAGCCAACAGAATGAAGAGCATGCTGCCTCAGAAAAGTGCAGGGCCTTCACTGGGCTACAGCAGCACAGATTGCACAAAGCTACACACCAATGGCAGCGCAGTGGGTGGGGTCACCATCCGTGGTACGCGCTCAAAGGCAGAGCTGCAGGAGTTGATGGACAGCCTGCAGCGAAGGAAGTCTGCTCTGGAGGCCAGTTTATTACGGGCCAGCGCAGACCGCTACCTCAGCCTGTCCCCACCTCCCAGCCCACTGTCCACTGCGTCTCTGCTCCAGGAGCGTCCACCCCTCTCCGTCAGAATCCCCACCAGCAGCCTCAGCATGCCTCCATCTCCTCGCCAATCCGAACGACCCATGAGCCCGGTTCACACCCACACTCGCACACGCCACCAATCACAGGACAGCCTTCTGCTCAGCACCTCCACCGATGGCCGACGCCCCAACACGGCCAGCTCCCTCCTCACCATGTGGAACGGCTCCTCCTCCTACACGGCCGACGGTCTGAGGCGTGGCCCGAGCGGGGCGGCCAGCATGCCCTCCAGTCCTAGGCTGGGGCGCAGGCTGCTGGCCCGGGACGGTGACCCCACAATGGAGCCCTCCCCTCGACAGAGGAAGTACTCCACCGGCTCTTTAAATGGACTGGGAGGAGGACACAGCCGCTCACTTCCCAGACTCTACAGAGGGGATGTGCCCACCCTGTCCCTGCCCCCCCGCCGCTCCTCCAGGCCGCGCCGCAGCCTGCCCTCTCTGGAGCGCCCCCCAGACGTTACTGTGACGGCCAGCGTGTCCAGCAGCCCCCGCAGGGCCAGTCTGACTTCACTGGGCTCGGCGCCGTGCCTGGACCTGGGTCTGGGGGAGAGGAGGCTGTCGTTTGGTAAGGGAGGGGTGGGCTCGGGGATGGGCCCGAGGAGAGGCAGCATCACCTCCCTCAGCAGCAAAGAGGATCTACGAGATTACCATCAGCGCCAGAGAGATGAGAGGCTTCGAGAACAGGAAGTGGAGAGACTGGAGCGTCAGCGTTTAGAGACTATTCTGAGTCTGTGCTCTGATCTGGGCCGTGTGGAGAACGGCTCCAGCGTCTCGGACCTGCAGAAGATCAACCGGGAGCTGGAGAAGCTGCAGGTCTCAGACGATGAATCTGTGTTTTCAGACTCGCTCAGCGCGGCTCCAGAGAACGGCACGAGTGTGAAGAGCAGAGGAGAGATCCTCCAGCCCCAGAGACAGCACAGACTGAGCTTCCACAGAGAGACCAGGCCTCAGTCTCCCACCAGCAGCGTCCGcagctccacacactccacacctccACACCTTCAGAGCAAGGGGGCGGAGGAAGTGCAGATGAGGCAGGAAGTGACCCGCATAGAAGAGGAGAGGATTCAAGTTCTCAACAACATCGAGGAGCTGGAGCAGAAGATCAAGGATTTAGACACGCAGATGGACGAGTCTGTCAGAGagatgGAGGTGGAGAAGGCTCTGCTGGAGGGGGAGCAGGATGCAGAGCTGGCTCTGCTACAGACAGATAAGGAGACGTTGGAGCAGCTCAATGAGAAAATGTCCAAAATGGAGAAAACCACAAACACAGACAAGACTCAGGACAGTGCCCTGCTGGAGGCTGAGAGGGTTAAAGTAGAGAAGCTATCAGAGCTGATCTCAGAGCAGAAGAGCCAGCTGGACTCGTGTCCGGAAGCGCTGAAGGAACAGCTCCAGATTCAGCTCTCCAGGGACACAGAGATGTTGGAGGCAGAGACGAAGCGCTTTGAGGATTTGGAGTTTCAGCAGCTGGAGAAAGAGAGTCATCaggatgaagagaaagagacacaacTACACGAGCTGCTCCGAGAGATAGCCGAGTACCAGCGAAACATCGTCACACGCAAGGAGCGGCTGCTGACCCTGAAGAAACAGTCCACCCAGATCACACAACAGACTCAGCGGGAGAAAGAGAACTTCCTGAAGGAGAAAAGCAACCTGCACCTCATGCTCCAGAGAGAGCGGGAGAACCTGTCTACGTTGGAGAGAAAGTATGCAGAGCTGACTGGTGGTCAGGCTTTCCCTCTGAATCCTGTGACGATGAAAGAGCATTTCCGCTCCATGGAGGAGAGAAGGCGGAGTAATGGCAGTAAAGAGGGCGGGGCTCTGCTGAGTGACAGCAGTGTTCCCCGGAAGAGGGAGAGGCAGAGTTCTGGAACCTTCAGCAGTTCTACTTTGGGCCGAAGCCTTTCTCCAAAGCCCCATCTGCCTCTGTCTCAGAGCTCGAGCTGTGGCAGCGTCCTGCcccgtgctctctctctcaccaccaGAGACCTGGACACTCGCCGCCTGCTGAAGACTGGTCAGCTGTTTTTGAATGATGAGAGGCAGAGACTGAACGACATGACCAGTAGGACCGTTTCTGAGTCAAATGTCTTCCTGGACCCGTTCCACTTCCTAGATAACGGGGGAAACTTCGATACCATGAGCGTGGAAAGTTCAGACAGCCTGGAGACCAGCATCTCTGCCTGCTCTCCAGACAACATCTCCAGcaGTGCCAGTACAGCTAATGTGGCTAAGATCGAGGAGATGGAGCGTTTGCTGAGAGAAGCACAGGCAGAGAAGCACAGGCTGCTGGAGCACAGGatCTTACACTGCCCCTCTATGTTGGGCTtgctgcaggagagagagatggagcagCGCAGGCAGGCtctggaggaggagaggaggaggagggaggagcTGGAGAGGAGGCTGCAGGAGGAGACTCACATACGGCAGAAACTCATCGAGAGGGAGGTGAAGCTCCGGGAGAAGCAGAGGAATCAGACTCGTCCGCTGACCCATTATCTGCCGGTGAGGAAGGATGACTTTGACCTGCGGGGTCACATAGAGGCAGCGGGACATCACCTGGACACCTGTTATCACCTGGCCATCACTGATAAGACCTGCCGCGGGTTTCTGGTTAAAATGGGGGGAAAAATCAAGACCTGGAAGAAGCGCTGGTTTGTGTTTGACCGTAACCGCAGGACCCTGGCGTATTATGCAGATAAACACGAAGCAAAGATGAAAGGTGTCATCTATTTCCAGGCCATAGAGGAGGTGTATTATGACCATCTAAAGAATGCACATAAGAGCCCGAACCCCTCGCTGACGTTCAGCGTGAAGACACATGATCGGGTGTATTACATGGTGGCTCCCTCCCCCGAGGCCATGCGGATCTGGATGGATGTGATCGTCACGGGAGCCGAGGGTTACACACATTTTCTGGTGTGAACAGCAGCTTTCctagaccacacacacacactgccatccCCAGCATCCACAGTGATTCACCGTGATTTGTTTAGCTCATGGAAAGGGCATCATTCTCAGTACTGGAGACAAACGCTTTTATActctatatattaaaatatgttgttaTAACAGGCATATGTATGAACTGACGTTATAAAGACCTGAGAAAAGCATAGCAGACATTTAAAGGTACTGGAATAGTGTGTGGCTGGAACCTGCACACCCTGACCCATTTTCTTAAGTTTCAGGGTGAAACTCTAGATGGATCATTCTTCGTGACACAGATATGGTGCTTTTGCCCTACTTTGCTTCTTTTAATGGGCAATTAGAGCATTTTGGGTGGTCATGAATTGGATATACCTCAGAAATGCATGGTTTGATTAAAGCTACAGGTAAGCTAAGGGTAATTGCTGATCAGTGAGAGTCAATTACTAAAAACTGTAATTGTTGAAATAACACAGCCTTTTATACATCAcaagcaatatttttttatagtatactattttttttattattttagctatGGTGCCTCCATGGGGTGACAGAACATCCTGCAGCAGAGTGTTGTTTAATGCTGAGCTTATTTTAACATCACAAAAGTCACAATATTGAGCTCCTGGTCTAAGCTGGGCCTGTTGGAAGCAGATAAATCACTAAGGTTTCAGGACAAAGACTATTAACTGATGCAGGAGCATGCCAAGGGTTTAGTGCTGTTTCGGTAAGGTCTGTCCTGGAAGGAAATCATTTCGTTTGTGCCTCAGGAACAcaagaccaaaaacaaaaa

Function

NR:

description
PREDICTED: pleckstrin homology-like domain family B member 2 isoform X1

GO: NA

KEGG:

id description
K23794 PHLDB; pleckstrin homology-like domain family B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681509.1 True 4257 mRNA 0.54 20 35736965 35789237

Neighbor

gene id symbol gene type direction distance location
LOC111194993 NA coding upstream 107503 35622099 ~ 35629462 (+)
LOC103023820 NA coding upstream 118691 35607772 ~ 35618274 (+)
LOC103043521 adgrg2 coding upstream 140719 35557928 ~ 35596246 (+)
LOC103023494 LOC107577900,LOC108442441 coding upstream 195174 35518171 ~ 35541791 (+)
LOC103023179 tmem120a,LOC108276692,LOC107728827,LOC107579123 coding upstream 232202 35498326 ~ 35504763 (+)
LOC103047081 LOC103047081,LOC108411574,LOC107589340,LOC100004523,LOC107697431,LOC107686183,LOC107578020 coding downstream 186240 35975477 ~ 36166303 (+)
G181439 NA non-coding upstream 105014 35630171 ~ 35631951 (+)
G181424 NA non-coding upstream 192749 35542348 ~ 35544216 (+)
G181415 NA non-coding upstream 248497 35484101 ~ 35488468 (+)
G181413 NA non-coding upstream 254343 35482286 ~ 35482622 (+)
G181408 NA non-coding upstream 265033 35470705 ~ 35471932 (+)
G181586 NA non-coding downstream 71964 35861201 ~ 35901409 (+)
G181605 NA non-coding downstream 132508 35921745 ~ 35922340 (+)
G181614 NA non-coding downstream 196828 35986065 ~ 35989603 (+)
G181615 NA non-coding downstream 212442 36001679 ~ 36002625 (+)
G181616 NA non-coding downstream 215302 36004539 ~ 36008418 (+)
LOC103044041 NA other upstream 33970 35685004 ~ 35702995 (+)
LOC107197592 NA other upstream 129372 35600483 ~ 35607593 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other upstream 333341 35392521 ~ 35403624 (+)
LOC103024954 LOC108423745 other upstream 1229641 34334576 ~ 34507324 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other upstream 1407995 34172924 ~ 34328970 (+)
LOC103024766 zdhhc20a,LOC107589301,LOC107743391,LOC107686182,LOC107728865,LOC107697429,LOC108411113,LOC108276908 other downstream 26798 35816035 ~ 35842871 (+)
G181734 NA other downstream 417330 36206567 ~ 36209854 (+)

Expression


Co-expression Network