sez6l (sez6l,LOC107741658,LOC107758626,LOC106568453)


Basic Information

Item Value
gene id sez6l
gene name sez6l,LOC107741658,LOC107758626,LOC106568453
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 2693 ~ 16694 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681511.1
agGAGGTGGGTCCGACAGGTTCGGTTCTGGGTGGAGGTGTGAGGGAGGGTGGGGGTGGAGCTGCCGCTGTGGGTCAGGAGCTGCTGGAATCGGTTTTGGCTCATAAAGATCAGCTATTGGCTCAGAAGGGTGTGGATCTGCCCACGGCGCTGCCGGCCGAGCTGCTGCCAGTGCTGAGGAAGGGCCTGGGTGCCGGGTCCGGTGCCGGGGGCGGGGCTCTGTCCcccgagcagcagcagctcctgaGGAAGATGCTGCCGGCTCACGGCGACGCCCACCACCCGACTCCACCCCCCGCCACCGAGCCGCTCACAGAGCCGCCCGAAGCTCCGCCGGTGATCAGAACCACCACCCCAGCTGCCACCGGCACCGGACCTGCCACCAGCACCGCTCCCAGAACCACCGCGAACCCAGAGGCTGAGCCGGAGGTGCTTCCGTCAGCGTTGTCGAGCTGCATGATTAATTTCTCGGATCCGGAGGGGTACATCGACTCGTCAGATGATCCGCCGCTTCCTGACGGGGCGTTCCTGCAGTGCACGTACACAGTGACGGTTTACACGGGATACGGAGTGGAACTGCAGGTAAAAAGTGTGAACCTATCAGAAGGTGAGCAGCTGTCAATCAGAGGCATCGACGAGGGCGGGGCTTTACTGGTGCTCGCCAATCAGACGCTACTAGTGGAGGGTCAGGTGATCCGCAGCCCGACCAATACGATCTCAGTGTTCTACCGCTCATCGCCTGAGGGGGGCATGGGCATGTTCCAGCTTCACTATCAGTTGTTCAGGCTGAGCTGTGCTCTGCCCAGGCGGCCGCACTTCGGGGACGTATCAGTGCTGGATCTGCACCCAGGGGGCGCTGCGCACTTCACCTGCCACATGGGGTATCACCTGCAGGGGGCAGCGACGCTCACCTGCCTCAACGCCTCCCTGCCGGTGTGGAGCCAGCGGGAGCCCGGCTGCAGAGCTCTGTGTGGAGGCGTGGTGAAGAACGCCACCGTGGGGCGAGTTCTGTCCCCGTCTCCTCACCCCGGACCCAACAGCACTCTGGACCGGAGCTGCTCCTGGTCCCTGGAGGCTCCCAGCGCTCAGAGATTACACCTCCACCTGGAGAGGATGGTGCTGGGACCCACAGACAGGCTGGTTCTGTGGAGTGGTTTAGATGCCGGTTCTGTGGTTCTGTTCGACTCTGGTCAGCGCGGTCCGATCCCGTTTGAAGGAGTTATCAGTGAAGGTCCTGCAGTGAGAGTCCAGTTTATAACGGATCAGCCGAACAGCCACAACACCGGCTTCAACATCCGCTACGAGGCGTTTGAGAAAGGTCACTGTTACGAGCCGTACATCCAGAACGGGAACTTCAGCACGACGGACGGGGGGTACGGCGTGGGCGCGGTGGTGCAGTTCTCCTGTGACCCGGGTCACTCTCTGGAGCAGGGCCCGCCCGTCATCGAGTGCATCAACACCCGCGACCCGTACTGGAACGACACCGAGCCGCTGTGTAAAGCTCTGTGTGGGGGGGATCTGTCCGGACCCAGTGGGGTGATCCTCTCCCCGAACTGGCCGGAGTGGTACGGGGAGGGGGAGGACTGCAGCTGGAGGATTCACATGGGGGAGGATAAGCGTGTTCTTCTGGATGTTCAGCTgCTGAATCTCAGTGACAGTGACATGCTGACCATCCTGGACGGGGATGAGGTCACCACCCGTATCCTGGGTCAGTATGTGGGCGGGACCAGTCCCTTCAAACTGTCCTCCACCACCCCCGACCTCACCATCACCTTCCACTCCGACCCGGCGGGGCTGGTGTTCGGGAAGGGGGAGGGCTTCATCATCAACTACATGGAGGTGTCCCGTAACGACTCGTGTCCGGACCTGCCGGAGATCCAGAACGGCTGGAAGACCACGTCTCACGCAGCGCTGGTGCGAGGAGCCCGGATCACGTATCAGTGTGACCCCGGCTACGACCTGGTGGGACGAGAGACGCTCACCTGCCAGCTGGACCTGAGCTGGAGCACCCAGCCGCCCTTCTGCGAGAAGATTATGTACTGTACGGATCCGGGTCATGTGGAGCACTCTGTAAGAACCCTCTCAGACCCCAAACTGCTGGTGGGAACCACTATTCAGTACAGCTGTAATCCCGGCTACATCCTGCAGGGCGGCGCCACCTTAACCTGCTACGGCCGAGAACCCGGAACCCCTGTCTGGACCTCCAGACTACCCCACTGCGTCTcggAGGAGTCTGTATCGTGTGAGAATCCAGGTCTTCCAGAGAACGGTTATCAGATCTTGTCTAAGAAGCTTTATCTGCCGGGAGAGTCTCTAAGCTTCATGTGTTATCAGGGCTTCGAGCTGATTGGAGAACTCGCCATCaaatgcattctgggaaatcCTTCGTTTTGGAGCGGGCCGCTGCCGCTGTGTCGAGCCAATCACGAGTGTTCTGGAAACCATGCTTTAGAAGTGGCTGAAGCTACAGAGTCGTCTCTGGATGGTGGGAGCATGGCTCTGGCCATTTTCATCCTGGTCCTGCTGCTGTCCGTCCTGCTCGGAGGAGCTTATATATATCTCACAAGGTGTCGGTATCACTCCAACCTGCGCCTGCCCCTCATGTACCCCCATCCCTACAGCCAGATCACTGTGGAGACAGAGTTCGACAACCCGCTGTACGAAACCGGAGGAgATACGAGAGAGTACGAGGTGTCGATATGAAGAGAGGTGAACCAGAGGAGGAGGAACTCTCAGATGCAGAAACCCCGTAACTCCCGCCCTGAGAGGAAGTGATGTAAATAGCTCCTGACAAATCCACTGctgcccccccacccccccacactGCACAAACTCAAATCTTACAACTTAAATCctcataaatcacattaaatatctgatattcattgtttttgcattgttgtcagaattcaatgagaatatttgacTTATTTGTAACCGATTCGTCcttgttttaagtaattttatctAATGAAAGTGTATTAATCTATTCTAttgcattatttttacattttctgaatTTATCTGCAAAATGATCTGCCAAGCATAGTACAATAAATCTCTTAATTCTAACTCAAGTACAAGGGAGTggtaataaataagtaattcatgcattattaattaattactgtattaattaatgtattactAATAAACTAAACATGAGAAATGTGAGATATTTAAACTACAGTTAGGAGGATTAAACTTGTTGAGATATGAGTTTTTGCAGCCTGATCAGggtcgagagagagagagatagagagaggtatagatAGAATAGGGAagggaggaggagagggaggggATGGAGGTGAATCATTGGACGAGAGACTGACTGTGTTTTTATCATGTGATCTGAACATTATGCACTTACAGCAGGAGGTCCTCGTTTAACTcaatccgtgtgtgtgtgtgtatgagtgtgtgtgagtatagtgagtgtgtgtgtgtg

Function

symbol description
sez6l Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: seizure 6-like protein

GO: NA

KEGG:

id description
K24363 SEZ6; seizure protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681511.1 True 3450 mRNA 0.55 16 2693 16694

Neighbor

gene id symbol gene type direction distance location
LOC103028768 tpst2 coding downstream 2536 19230 ~ 26274 (+)
LOC103042590 LOC108425226,LOC107706806,LOC107588954 coding downstream 50892 67586 ~ 108381 (+)
LOC103026711 NA coding downstream 93001 109695 ~ 115637 (+)
LOC103027009 LOC108425225 coding downstream 104749 121443 ~ 127993 (+)
LOC103027926 cnnm4,LOC108277002 coding downstream 112339 129033 ~ 146195 (+)
G172099 NA non-coding downstream 208 16902 ~ 17989 (+)
G172118 tacr1b,LOC108425229,LOC107689601,LOC107741654,LOC107589026,LOC107579787 non-coding downstream 40455 57149 ~ 59233 (+)
G172130 NA non-coding downstream 67690 84384 ~ 84848 (+)
G172126 NA non-coding downstream 115759 132453 ~ 153485 (+)
G172136 NA non-coding downstream 128525 145219 ~ 203802 (+)
LOC103028238 rps27a,ubb,scarb1,LOC107588960,LOC107658631,LOC107758624,LOC107567744 other downstream 12842 29536 ~ 50591 (+)
G172120 LOC107706809,LOC108425229,LOC107577657,LOC107658568,LOC107721554,LOC107587419 other downstream 46669 63363 ~ 64569 (+)
LOC103042277 cnnm3 other downstream 53928 70622 ~ 166454 (+)
LOC103025596 purb,LOC108425219,LOC103372361,LOC107099159 other downstream 178432 195126 ~ 232335 (+)
LOC103039814 vdac2,LOC107704122 other downstream 419079 435773 ~ 482936 (+)

Expression


Co-expression Network