LOC111195096


Basic Information

Item Value
gene id LOC111195096
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 4332873 ~ 4337695 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681516.1
atacaaacatagcCAATTACTgataaattgtgtgtgtgtgtgtgtgtctggttaGAATTCTATTAATATAACATGTACTGTGGTCTTGCAGTGCAGAAATAAGCTTTTAAATATATCTGATTATTTGTGTGACTGTAAAATAGCCCAGCTCAGTTGTGAGTATTCCACCACTGCGGTTACTATGGTAACCGTCGTTGACGCTGCAACGTTCGAATCCACGAGTGACGTCATACCGCGCTGACTATAAATACGCTCGACAGGGGAGCAGCAGCTTCAGTGCACACGCGCGATCATCCTCAGCGAGTCTACGAGAAAGCCTACCATGTTTCTGTTGCAACGACTTTGGGACTACACCACTGGGGGAGCTGCCGAGGAGCAGCCGCTGGGTGAACAGGAGGAGCTCCGTCTGTATGACCGAGAGCTCCCACtgggaggaggagagaggacTAGTGAAGAGGATAGAGAAGAAGTGCTGATGGAATTAGAGAACGTGATTCAGATAGTGGAGAATAGGACTCAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTGAGCAGAGGGCTGAGGCACAGCTTGATGGAATGAGGGCCACAATTCTCTGCACCCCCCCCCCTTATTCACTTTGGATAAAACAAATGAGACTGTATTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681516.1 True 3259 mRNA 0.54 2 4332873 4337695

Neighbor

gene id symbol gene type direction distance location
LOC103042678 NA coding upstream 88844 4242168 ~ 4244029 (+)
LOC103029394 smad4a,LOC108435141,LOC107559658,LOC107668639,LOC107741365,LOC104924734,LOC107373891 coding upstream 1143173 3178378 ~ 3189700 (+)
LOC103031084 NA coding upstream 1159317 3170196 ~ 3173556 (+)
LOC111195007 LOC108435126 coding upstream 1176758 3142848 ~ 3156115 (+)
LOC103030033 NA coding upstream 1201237 3125086 ~ 3131636 (+)
ranbp3l NA coding downstream 17239 4354934 ~ 4379352 (+)
LOC103029159 NA coding downstream 45436 4383131 ~ 4389029 (+)
LOC103026990 ucp3,LOC103026990,LOC108433282,LOC108277383,LOC107578242,LOC105890488,LOC107743402 coding downstream 100345 4438040 ~ 4444030 (+)
ucp2 ucp2,ucp2b,LOC106567822 coding downstream 114559 4452254 ~ 4457565 (+)
rab6a rab6a,LOC106603351,LOC107741150 coding downstream 131397 4469092 ~ 4487880 (+)
G173259 NA non-coding upstream 16401 4313844 ~ 4316472 (+)
G173232 NA non-coding upstream 82910 4248872 ~ 4249963 (+)
G173182 NA non-coding upstream 286529 4046083 ~ 4046344 (+)
G173121 NA non-coding upstream 290913 4008213 ~ 4041960 (+)
G173119 pdlim5b,LOC108435134,LOC108277016 non-coding upstream 327216 3958740 ~ 4005657 (+)
G173268 NA non-coding downstream 55379 4393074 ~ 4400580 (+)
G173270 NA non-coding downstream 64341 4402036 ~ 4476650 (+)
G173272 rsf1b.1,LOC108277234,LOC107697440 non-coding downstream 71257 4408952 ~ 4410779 (+)
G173278 NA non-coding downstream 115174 4452869 ~ 4490753 (+)
G173279 mrpl48 non-coding downstream 125735 4463430 ~ 4466951 (+)
gdnf gdnf,LOC107653769,LOC107752627,LOC107692037,LOC107569368,LOC107727951 other upstream 202391 4118034 ~ 4130482 (+)
G173111 LOC108435134,LOC108277016 other upstream 400882 3908942 ~ 3931991 (+)
G173094 NA other upstream 589668 3740302 ~ 3743205 (+)
unc5c unc5c,LOC108435138,LOC108277026,LOC105911728,LOC106564027,LOC105025160,LOC106568183 other upstream 593137 3465133 ~ 3739736 (+)
LOC103031931 LOC103031931,LOC108435131,LOC104953549 other upstream 1606797 2718609 ~ 2726076 (+)
G173397 NA other downstream 405874 4743569 ~ 4744249 (+)
ptbp3 ptbp3,LOC106592370 other downstream 462934 4800629 ~ 4904202 (+)
nrarp nrarp,nrarpa other downstream 766032 5103727 ~ 5152836 (+)
G173501 NA other downstream 845796 5183491 ~ 5183777 (+)
LOC103041160 NA other downstream 2198632 6536327 ~ 6541379 (+)

Expression


Co-expression Network