LOC103029876


Basic Information

Item Value
gene id LOC103029876
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 10756715 ~ 10758402 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681534.1
AATAATCTGctttgaaaaaaagtattatttacttaaataaattcAAGATtgtaaatacttatttttattcattcctTTTTGCATTTTAACTTTTGAAAATTGCCGTGATTATTGGGAAGGCCTGTCCGTGAGTGGCTAATGGCCAAGCATCTACAGGTGACGTAGAACAATGCACagtaagcattaaaaaaatgagaataatCCATGTTTTGTACGCAAATCAAACCCATAATTTCGTTTTCAAACGTTGTTTTTCTTGCTCTCAATCTGAGACTTGTTGCCTTGTGCGGAACCAATTCTAGTCACACGGTGTCGCTGTTGATTGTGAATTTAAAATTCTTAACTGATTGACATTTTGTCGTACCTTTTTCTATGAATGCTTAAGTCGGGGGAGGTGCGTAAAAAAGACTCAAATGTAAACGTAGCTGGATGGTTAATAAATGGACGAGCCTTTGGTGGAGTCTTATATTGTGTATAGTACTTAATAGTTTAAATAACCTAAACTTTAACACATGGACGTGATGCATTTCGGAGCCAGTGGAGGACGTGTCTGGATCAGGGCGTTGCTGCTTTTGTTTTGGTGGGATTTCTCTCGTTGCCAGATTTCCTACTCCATATCAGAGGAGGTAAAGAAGGGCGCTGTTGTTGGGAATTTAGCAAAGGATCTCAACATTGACGTCCAGGAGCTGCAGTCGCGCATGTTTCAGGTCGTGGCTGGATCTAATAAGCGCTATTTTGACGTGAATTTGAAAACGGGAGTATTGTTTGTGAACGACAGATTCGACAGGGAGGAGCTATGTGAGCGTAAGCAGAAATGTTCCTTAAACATCGAGGCAATGGCACAAAACCCTCTGACGCTGTACCGCATTGAAGTAAATATCTTGGACATTAATGACAACTCGCCTGTTTTTTCACTTCAGACACTTCTGCTGAACATTTCTGAAAACGTTCTACCTGGAGACAGGTTTTCCCTGCCTTTGGCCCATGATATGGATGTGGGCACGCATGCAGTAAAGAACTATAAGCTTAGTGCCAATGAGTACTTCTCAATAGATGTTCAGATTAGCGGAGAAAGTGCCTCAGCAGAGCTGGTTCTACAGAAAGCtatagatagagagaaacaAGCACTGGTTAAACTCACTTTAACTGCTACAGATGGTGGAAAGCCACCTAGATCTGGGACTTTGGAAATATTAGTCAATGTATTGGATATTAATGACAATTATCCAGTTTTTAGCCAGCCTTTGTACAAAGTCAAAGTCCAAGAGAATGCAGCAGTTGGAACTAAAATTTTGACAGTTTCTGCCACTGACCTAGATGAAGGTATAAATGGTGAAGTGGTTTATGCCATTGTAGGCCATGAAAGAAGCTCTGTAGTAAATTTGTTTTCTATAAACCCACATTCAGGAGATATCACTGTAAAAGGTAATATTGATTATGAAGAAAATGCAGCCATTGAGCTGAGAATACAAGCTCATGATAAGAGTCATTCTCCAAGACATGGCAACTGCAAAGTGTTGATTGAGGTTCTTGATGTAAATGACAATGCTCCTGAAGTTTCAGTCACTCTGCTTATGAGCTCAGTCAGTGAGGACACCAAACCTGGCACTGGTTTTGCATTGGTTACTGTTTCAGATCAAGATAGTGGCACTAGTGGCAAAGTAGACTGTAGAGTAActgcactgtaa

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681534.1 True 1688 mRNA 0.40 1 10756715 10758402

Neighbor

gene id symbol gene type direction distance location
LOC111195027 LOC108437794 coding upstream 8563 10745542 ~ 10748152 (+)
LOC111195026 LOC108437794 coding upstream 12433 10740427 ~ 10744282 (+)
LOC111195024 LOC108437794 coding upstream 17310 10736746 ~ 10739405 (+)
LOC103030205 NA coding upstream 20876 10732824 ~ 10735839 (+)
LOC103030520 NA coding upstream 26050 10728335 ~ 10730665 (+)
LOC103026865 LOC108437806,LOC108277182,LOC107687386,LOC107678002,LOC107552069,LOC107586137,LOC107742371,LOC105905983 coding downstream 22394 10780796 ~ 10817393 (+)
LOC103021388 LOC105909655,LOC105909654,LOC105905981,LOC105894871,LOC108276796,LOC105909651,LOC108276799,LOC108276792 coding downstream 63121 10821523 ~ 10826252 (+)
LOC111195105 NA coding downstream 68020 10826422 ~ 10830049 (+)
LOC107197471 NA coding downstream 72326 10830728 ~ 10838578 (+)
LOC103029503 NA coding downstream 166672 10925074 ~ 11019432 (+)
G174813 NA non-coding upstream 80714 10675716 ~ 10676001 (+)
G174812 NA non-coding upstream 85544 10670898 ~ 10671171 (+)
G174811 NA non-coding upstream 89535 10666950 ~ 10667180 (+)
G174810 NA non-coding upstream 91287 10665077 ~ 10665428 (+)
G174809 LOC103034963,LOC108437818,LOC108276546 non-coding upstream 93221 10661290 ~ 10663494 (+)
G174930 NA non-coding downstream 329317 11087719 ~ 11088839 (+)
LOC103022678 NA non-coding downstream 335315 11093717 ~ 11095900 (+)
G174944 NA non-coding downstream 379147 11137549 ~ 11137957 (+)
G174964 NA non-coding downstream 432079 11190481 ~ 11265122 (+)
G174983 NA non-coding downstream 642991 11401393 ~ 11401613 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 124950 10621028 ~ 10631765 (+)
rexo2 NA other upstream 1603582 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 2204105 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 2590053 8149119 ~ 8166662 (+)
G174259 usp25 other upstream 2831275 7904595 ~ 7925440 (+)
G174874 LOC108437803 other downstream 73766 10832168 ~ 11019418 (+)
G174994 NA other downstream 671469 11429871 ~ 11436530 (+)
G175108 NA other downstream 1150470 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 1432954 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 1765739 12524141 ~ 12540201 (+)

Expression


Co-expression Network