LOC111195108


Basic Information

Item Value
gene id LOC111195108
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12314732 ~ 12316734 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681538.1
ATGGAGGCAAGAAACCGCCACCATGCCCCTGCGATCCAGAGGCAGATAGGGAAGAACCCAGTGGACCCAGACCATCCACAGCCCATTAGGAGCCCAGAAGACCCGCGGCCACACATCCCGATGGTAACCATGCGCACACCCCAGATGAGGACGGGGGAGACTCCAGACGAAGCCCCCATGGCAAAGAGCAAGAGTCCAGAGAGCCAAAGGAAGCGAGCAGCCCACCCCCCCCGGCAGGCCAGCACCCCCTGCACGAGCCGAGCATGCGGCCCCCGAGATCCCAAGCACCCGGGAACAGCCCGACACCCGGCAGGgccaccccccccccacgcCAAGGGGGCCCAAGCCACCCCCAGGCCACGGCCACCAAGGGGGCGGGCCAGAGATCACATTAGGGCATCCGGCCACGCACCCAGGGACCCACGGACACCCACCCCCCCAGGAACGGCAGTGACGATCGGCGGAGAGCAGCGTGGAGCGGTGGGGGGGCAAAAACCCGCCCTCCGCAACCATGTCCCACAGGTGTCCATGCTCAGTCAGCCCCAAACCCAGGACCAACTGGAGGGCACCCAGAATCCCGGAATGCCAACCAGACACCCCAACACGGACCAAACCACCACCCCCCACGACGGCGCGCCCAAGAGAGGCATAGACCCTCCCCAGCGCAGGGAGGGACCCAAACAGGCGACAGACGCCCACGGGCACCAGGGCCCCGGACTCCGCACCCCAACCGCCACAGGGGAACCCAGCCAACCGGACAGGGCCAGCACCCACCACCATGGGCCCCCCAGACCCACACCCCAAGACCACAAGAGCATACATCCAGGCCCCCCCCACCAACAACCAGGGCCCGCACACAGAGATCACCAAGCGGCAGCCACCGTCCCCAGTCCAAGTGCCATCAGACACCCGAATCCCCCGATCCCCCCCCAGCCACCTGCCGGACGCACCAGGAGACACGACTACAGCCGCCCACCCCAATCATGTGATGGAGCTGATCAGTGGGAACCAGAGAGATTCAAATGTAGCCAATTGGTTTTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681538.1 True 1044 mRNA 0.66 2 12314732 12316734

Neighbor

gene id symbol gene type direction distance location
cnih2 cnih2,LOC100706298 coding upstream 163682 12144051 ~ 12151050 (+)
LOC111195107 NA coding upstream 219443 12090628 ~ 12095289 (+)
LOC107197312 NA coding upstream 321508 11988169 ~ 11993224 (+)
LOC111195033 NA coding upstream 375635 11935660 ~ 11939097 (+)
LOC103027020 nlgn2b,LOC108443341,LOC107678031,LOC107554306,LOC107720555,LOC101475673,LOC102787387 coding upstream 448816 11750213 ~ 11865916 (+)
ptrh2 ptrh2,LOC107744620,LOC107548881,LOC107699263,LOC107693958,LOC107747021,LOC107576753 coding downstream 357144 12673878 ~ 12692133 (+)
LOC103039534 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 coding downstream 474489 12791223 ~ 12794193 (+)
katnal1 katnal1,LOC107741157,LOC107653760,LOC107578067,LOC107697436,LOC107743395 coding downstream 479382 12796116 ~ 12809169 (+)
ubl3 ubl3,LOC107741158 coding downstream 519996 12836730 ~ 12870232 (+)
LOC103046100 NA coding downstream 711387 13028121 ~ 13029690 (+)
G175250 ints2,LOC107744627,LOC107699256 non-coding upstream 17413 12296792 ~ 12297319 (+)
G175249 ints2,LOC107744627,LOC107747027,LOC107693886,LOC107699256,LOC107578473 non-coding upstream 53912 12256594 ~ 12260820 (+)
G175237 NA non-coding upstream 95043 12219246 ~ 12219689 (+)
LOC111195040 NA non-coding upstream 96894 12214700 ~ 12217838 (+)
LOC111195036 NA non-coding upstream 125351 12187243 ~ 12189381 (+)
G175272 NA non-coding downstream 3216 12319950 ~ 12326872 (+)
G175277 NA non-coding downstream 22079 12338813 ~ 12365939 (+)
G175284 NA non-coding downstream 30764 12347498 ~ 12348188 (+)
G175288 med13 non-coding downstream 35866 12352600 ~ 12353486 (+)
G175305 NA non-coding downstream 78679 12395413 ~ 12402354 (+)
LOC103027177 tmem261,LOC103027177 other upstream 105283 12191356 ~ 12209449 (+)
G175108 NA other upstream 401276 11908872 ~ 11913456 (+)
G174994 NA other upstream 878202 11429871 ~ 11436530 (+)
G174874 LOC108437803 other upstream 1295314 10832168 ~ 11019418 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 1682967 10621028 ~ 10631765 (+)
rnft1 rnft1 other downstream 207407 12524141 ~ 12540201 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 422769 12739503 ~ 12745053 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 976564 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 1037034 13353768 ~ 13418416 (+)
G175900 NA other downstream 1362625 13679359 ~ 13685563 (+)

Expression


Co-expression Network