LOC103039067 (cltc)


Basic Information

Item Value
gene id LOC103039067
gene name cltc
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12692865 ~ 12753715 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681539.1
CGCTTTCACCCCGGAGAGATTCCGCCGCCATTGCAGCTTCCGAGAGTTACAGAGCAGCAGCGGCCGCCTCTCGGCGATCTGGAGCACAAGCGCCTGTTCTTCACCCGTTGGGCGAGCAGAGCATCAAGCGCGTCCTTCGGCTTCACACCACACAGCTCCCCTGTCGGTTCGGTGGGACTCACGGCTAGCCGTCCTCGGAGAGCCCGGCTAGGACCTGAGAGAGAAGCTGCAGCCGGTTAGCGGACAGAGGGAAACGGAGGAGAGGGACGAGGAGCGACCATGGCTCAGATTCTGCCGATCAGATTTCAGGAGCACCTGCAGCTCCAAAACTTGGGCATTAACCCAGCTAACATCGGGTTCAGCACCCTGACGATGGAGTCTGATAAATTCATCTGCATCCGGGAGAAGGTTGGAGAGCAGGCGCAGGTGGTGATTATTGATATGGCCGACCCAAACAGCCCTATCCGTCGACCCATCTCTGCAGACAGCGCCATCATGAACCCAGCCAGCAAAGTCATCGCCCTGAAAGACGCTGCCAAAACCCTTCAAATTTTTAACATTGAGATGAAGAGCAAGATGAAGGCCCACACCATGACAGATGATGTGACTTTCTGGAAGTGGATCTCTCTGAATACCGTAGCCCTTGTGACTGATAACGCTGTCTACCATTGGAGCATGGAGGGAGACTCACAGCCGGTCAAAGTCTTTGATCGTCACTCCAGTCTGGCAGGCTGCCAAATCATTAACTACCGCACCGATGCCAAGCAGAAATGGCTCCTCCTTATTGGCATCTCGGCTCAGCAAAACCGTGTTGTGGGGGCAATGCAGCTGTACTCTGTAGACAGGAAGGTGTCTCAGCCCATTGAGGGCCATGCTGCCAGCTTTGCTCAGTTCAAAATGGAAGGAAACACAGAAGAGTCAACTCTGTTCTGCTTTGCTGTCAGGGGCCAGGCTGGTGGAAAGCTTCATATAATTGAAGTAGGAACACCACCGACTGGTAATCAGCCTTTTCCAAAGAAAGCCGTGGACGTGTTCTTCCCTCCTGAGGCTCAGAATGACTTTCCAGTGGCCATGCAGATCAGCCCCAAACAGGACGTAGTGTTCCTCATCACCAAGTATGGCTACATCCACCTCTATGACCTGGAGACGGGCACCTGCATCTACATGAACAGAATTAGTGGCGAGACCATTTTTGTTACGGCTCCTTATGAGGCCACTTCTGGGATCATAGGCGTCAACAGGAAAGGACAGGTCTTGTCAGTGTGTGTCGAGGAGGAGAACATCATCCCCTACATCACCAACGTTCTGCAGAACCCGGACCTGGCCCTGAGGATGGCTGTAAGGAACAACCTGGCCGGAGCTGAGGAGCTATTCGCCCGCAAGTTCAACAACCTGTTTGCTGGGGGCAACTACTCTGAAGCTGCCAAAGTGGCTGCCAATGCTCCAAAGGGGATTCTGCGTACTCCGGACACCATCCGGCGCTTTCAGAGCGTGCCGGCTCAGCCAGGCCAGACCTCTCCTCTGCTGCAGTATTTTGGAATCTTACTGGACCAGGGCCAGCTCAACAAGTTTGAGTCACTGGAGCTCTGCAGGCCCGTCCTGCAGCAGGGCCGCAAACAGCTGTTGGAGAAATGGCTCAAAGAGGACAAGGTATGCAAatgggggggagagagaggggagattAGAATCAGAACACACACCCTACCGGAAAGCTCTTCCTGTGGGAGTGCATCTccgtgcagaaaCAACCGTCCCTCAGAAGGCCCTCTCCAGACACGTCTCCTCGAGATGAACTTTATGCATGCACCTCAGGTCGCTGATGCAATCTTGGGAAATCAGATGTTCACGAATTATGACCGTGCCCACATTGCCCAGCTGTGTGAGAAAGCAGGACTGCTGCAGAGAGCCCTGGAGCACTACACAGACTTGTATGACATCAAACGCGCGGTTGTACACACGCATCTGCTCAACCCCGAGTGGTTGGTAAACTTCTTTGGCTCTCTGTCGGTGGAGGATTCGCTGGAATGTCTGAGAGCCATGCTGTCCGCAAACATCAGACAAAATCTTCAGATTTGTGTTCAGGTGGCCTCCAAATACCATGAGCAGCTCTCCACCCAGTCGCTCACCGAGCTATTTGAGTCCTTTAAGAGCTTTGAGGGTCTCTTCTACTTCCTCGGCTCGATTGTGAATTTCAGTCAGGACCCAGAGGTTCATTTCAAATACATCCAGGCTGCCTGCAAGACGGGTCAGATCAAGGAGGTGGAGCGAATCTGCAGAGAGAGCAACTGCTACGATCCTGAACGCGTCAAGAACTTCCTTAAGGAAGCTAAACTCACTGACCAGCTGCCCCTCATCATTGTGTGTGACCGTTTTGACTTCGTCCATGATTTGGTGCTCTACCTGTATCGCAACAGCCTCCAGAAGTACATTGAGATCTACGTGCAGAAGgTGAACCCCAGTCGTCTGCCAGTTGTGATTGGTGGTCTGTTGGATGTGGACTGTTCTGAGGATGTGATTAAGAACCTGATCCTCGTGGTGAGGGGCCAGTTCTCCACTGACGAGCTGGTGGCTGAGGTGGAGAAGAGAAACAGACTGAAACTGCTGCTGCCCTGGCTGGAGGCTCGCATCCACGAAGGCTGTGAGGAGCCCGCTACCCACAATGCCTTGGCTAAGATTTACATCGACAGCAACAATAACCCAGAGCGCTTCTTGCGGGAGAACCCATACTACGACAGCCGTGTTGTGGGAAAATACTGCGAGAAGAGGGACCCCCATCTGGCCTGCGTAGCTTACGAGAGAGGCCAGTGTGACCAGGAGCTGATAAATgtgTGTAATGAGAACTCCTTATTTAAGAGTTTGTCTCGTTATCTGGTTCGCCGCCGGGATCCTGAGCTATGGGCTAGCGTGCTGCTCGAAACCAACCCATATAGGAGGCCTCTGATTGACCAGGTGGTGCAGACCGCCCTGTCAGAGACTCAGGACCCAGAGGAGGTGTCTGTCACAGTGAAGGCCTTCATGACAGCTGACTTGCCAAATGAACTCATAGAACTTCTCGAAAAGATTGTTTTGGACAACTCTGTATTCAGTGAACACAGAAACCTCCAGAACTTGCTGATTTTGACAGCCATCAAAGCCGACCGCACCCGTGTCATGGAGTATATTAACCGCTTGGACAACTACGATGCTCCTGATATTGCCAACATCGCTATCAGCAGCGAACTCTTTGAGGAGGCCTTTGCGATCTTCAGGAAATTTGATGTCAACACTTCAGCAGTGCAGGTTCTGATCGAACACATTGGTAACCTGGACCGAGCGTACGAGTTTGCGGAGCGCTGCAACGAGCCAGCTGTGTGGAGCCAGTTGGCTAAGGCTCAGCTCCAGAAAGGCCTGGTCAAAGAGGCCATCGATTCCTACATTAAGGCTGATGACCCCTCTGCTTATATGGAGGTGGTGCAGGCAGCTGATCAGAGTGGTAACTGGGAGGACTTGGTGAAGTTCCTGCAGATGGCTCGTAAAAAGGCGAGAGAGTCCTATGTGGAGACGGAGCTGATCTTTGCTCTTGCCAAAACCAACCGACTGGCTGAGCTGGAAGAGTTCATTAATGGTCCTAACAATGCCCACATCCAGCAGgttggtGATCGTTGTTATGATGAGAAGATGTACGAGGCTGCAAAGTTACTCTACAACAATGTGTCGAACTTTGGCCGCCTGGCTTCCACTTTGGTTCACCTCGGAGAATACCAGGCTGCGGTGGATGGAGCTCGCAAAGCTAATAGCACACGTACATGGAAGGAGGTGTGCTTTGCCTGTGTAGACGGCAAGGAGTTCAGACTGGCTCAGATGTGCGGCCTTCATATCGTGGTCCATGCAGATGAACTGGAAGAGCTAATCAACTACTACCAGGACCGTGGTTACTTTGAAGAACTGATCACCATGCTGGAGGCGGCTCTGGGACTGGAGCGGGCTCACATGGGCATGTTCACAGAGCTGGCCATTCTGTACTCTAAATTTAAGCCTCAGAAGATGAGGGAACACCTGGAGCTCTTTTGGTCCAGGGTCAACATCCCAAAGGTGCTGCGGGCAGCAGAGCAGGCTCATCTGTGGGCGGAACTGGTCTTCCTGTATGACAAGTACGAGGAATACGACAATGCCATCATCACCATGATGAACCACCCCACAGATGCCTGGAAAGAAAGCCAGTTCAAGGACATCATCACCAAGGTGGCCAATGTGGAACTGTATTACAAAGCAGTCCAGTTTTATCTTGAGTTCAAGCCCTTGTTACTGAATGACCTTCTCATAGTGCTCTCACCCAGACTGGACCACTCTCGCGCAGTCAACTTCTTCAGCAAGGTTAAGCAGCTCCCTCTGGTCAAACCCTACTTGCGATCTGTACAGAACCACAACAACAAGTCTGTCAACGAAGCACTTAATAACCTCTTCATTACAGAAGAAGACTACCAGGCACTTAGGACGTCCATAGATGCGTATGATAACTTTGACAACATTGCTCTGGCTCAGCGACTGGAAAAACACGAGCTCATTGAGTTCAGAAGAATCGCGGCCTACCTCTTCAAAGGCAACAACCGCTGGAAACAGAGTGTGGAGCTCTGCAAAAAGGACAAACTCTACAAGGATGCTATGCAGTATGCATCAGAGTCAAAGGAGACAGAGCTTGCAGAGGAGTTGCTGCAGTGGTTCTTGTTGGAGGACAAGAAGGAATGCTTTGCTGCCTGCCTCTTCACCTGCTACGACCTTCTTCGACCCGATGTGGTACTGGAGACTGCCTGGAGGCACAACATCATGGACTTCTCAATGCCATACTTCATTCAGGTTATGCGGGAGTATCTGAGCAAGGTGGACAAGCTGGAGACTTCTGAGTCTTTAAGGAAACAGGAGGAGCAGGCAACAGAGACGCAGCCCATTGTTTATGGCACACCCCAGCTGATGCTGACTGCAGGCCCCAGTGTACCTGTTCCCCCACAGCAGGCTTATGGCTACGGTTACACAGCACCAGCCAGTTATGGCCAGGCTCCTCAAGCTCAGCCTGGCTTTGGTTACGGCATGTAAAGACCACCCCTGCACCCCTTGAAAATGCTGATGCTTAGTTCAGCCCCAGTCCAACCCCCTTCATCCATTTCCCACAAAGTTCTTCACCAGCCCTCCTCACCACCTCTACTCCCTGCAGGATATATGAGCAAAGTTATTGTTatactttttaatttagttttttttttatttccctttaCACTGTCATGAAGgacttgttttatttctgtactttcaaagaaaatgaaatgtttaaatcacCAGAAATATGTTTTTCCCCACATTCCATGTATGTCTTTTTGATTTTCCAACATTTCCATTTAATTTGAAGGGAAATGGTTAATGTCCATCGTGAGAACGCTATGGGAAGAGCAACTCGTCTATTGAATAAAAGTCTTTTTGTGAAGTGTCTGATTTGCACTCTGTAGTCAAAAGATGATAACTAATATAGTATCTCGTTTTGGTGTGTGAGCAGCTTGTTCAGTTTGtttgtaaaatgcatttaagcGTTGTTTATTCTGAGAACAGTGAAGTGTTCCAAAGTATTTGACTGCCACTTCCATGAATGAACACTACTTAAAAATAGTATAATACTATGAGCTACACGGGAGCGTGGCGATCtccttatataaaaaaatattttaatgcctttaaataatgatttataaagtgATTAAATTCTCACCGTATGCAGATTACTACAGAGAAGTCAGCAAGCCCCATTGCTATTTACAGACAATCTGATCGTCAATTATATCTGCAGTTATTTAAGTGGTAAAAGCATACTCTAAGTACGTAGATTGGCATGCAGTTGTAACTGGATGAGACGGATGATCATTCAGCAAAAAGCTGTTCTCTGTCTTTGCAGCAATACAGAGAAAAATGTGTGAAGGGCATCTATTAGAAaccatgaaaataaataaatactgtatttgccAGTAAAGTGGGTTCATGATTACAGAAGCTGTGGTGTGACAGTAATGTTTGATTGTTGGCTGATTGCAGAGTAAAATCCAGTGATTGCCTGAATCATGTAAACACAAGTGAATGTAAATACGTTGACTGGATTACTGACTAAATCAGATTTTCTGCGCATTACAGACAGATAACCTTATCATGTGCAGTGAGTGGTGCTCTTCATGTGGTACCATTCCATTTAGAGGGATAATTAAAGAGAATTATTATACAGA

Function

symbol description
cltc Enables several functions, including clathrin light chain binding activity; disordered domain specific binding activity; and low-density lipoprotein particle receptor binding activity. Involved in several processes, including amyloid-beta clearance by transcytosis; negative regulation of hyaluronan biosynthetic process; and receptor-mediated endocytosis. Located in cytoplasmic vesicle; lysosome; and mitotic spindle microtubule. Part of clathrin complex. Implicated in autosomal dominant mental retardation 56.

NR:

description
PREDICTED: clathrin heavy chain 1 isoform X2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030130 clathrin coat of trans-Golgi network vesicle cellular_component
GO:0030132 clathrin coat of coated pit cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K04646 CLTC; clathrin heavy chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681539.1 True 6239 mRNA 0.49 31 12692865 12753715

Neighbor

gene id symbol gene type direction distance location
med13 med13,LOC107744626,LOC107699258,LOC107693951,LOC107747042,LOC107548827 coding downstream 224183 12337212 ~ 12468682 (-)
ints2 ints2,LOC107744627,LOC107699256,LOC107747027 coding downstream 386182 12256861 ~ 12306683 (-)
wdr74 wdr74 coding downstream 554076 12119986 ~ 12138789 (-)
LOC103046645 ehd1b,LOC108414013,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding downstream 612234 12008581 ~ 12080631 (-)
cxadr cxadr coding downstream 704951 11957424 ~ 11987914 (-)
btg3 btg3,LOC102786047 coding upstream 4511 12758226 ~ 12761626 (-)
alox5ap alox5ap,LOC107697405,LOC107583340,LOC107743481,LOC102776613,LOC107579207,LOC107741175 coding upstream 10473 12764188 ~ 12768958 (-)
uspl1 NA coding upstream 24296 12778011 ~ 12788981 (-)
LOC103040161 NA coding upstream 254102 13007817 ~ 13011654 (-)
LOC103041391 LOC108439213 coding upstream 263811 13017526 ~ 13019489 (-)
LOC103047042 NA non-coding downstream 47298 12606044 ~ 12645567 (-)
G175578 NA non-coding downstream 79452 12613155 ~ 12613413 (-)
G175553 NA non-coding downstream 87432 12601206 ~ 12605433 (-)
G175555 NA non-coding downstream 92611 12597647 ~ 12600254 (-)
G175573 NA non-coding downstream 107593 12584291 ~ 12585272 (-)
G175610 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 non-coding upstream 38529 12792244 ~ 12794302 (-)
G175619 katnal1,LOC107578067,LOC107697436,LOC107741157,LOC107653760 non-coding upstream 47191 12800906 ~ 12809051 (-)
G175626 NA non-coding upstream 83073 12836788 ~ 12837379 (-)
LOC111195042 NA non-coding upstream 99618 12853333 ~ 12859954 (-)
G175632 NA non-coding upstream 116357 12870072 ~ 12871807 (-)
G175583 NA other downstream 69310 12623211 ~ 12623555 (-)
G175119 NA other downstream 761111 11827807 ~ 11931754 (-)
G175072 NA other downstream 1049233 11643317 ~ 11643632 (-)
LOC103024982 cldn7,LOC108444573,LOC107552057,LOC107586151,LOC107676017,LOC107678043,LOC107720692 other downstream 1232835 11442311 ~ 11460030 (-)
LOC103030477 NA other downstream 1289164 11397549 ~ 11403701 (-)
G175647 NA other upstream 143325 12897040 ~ 12898630 (-)
G175707 NA other upstream 235222 12988937 ~ 12996934 (-)
LOC111195039 NA other upstream 249672 13003387 ~ 13007061 (-)
LOC103044870 NA other upstream 498442 13252157 ~ 13254568 (-)
LOC111195047 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926,LOC107688028,LOC107689570,LOC107565351 other upstream 651566 13405281 ~ 13407280 (-)

Expression


Co-expression Network