LOC103047635


Basic Information

Item Value
gene id LOC103047635
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 13215309 ~ 13216319 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681540.1
cattttatgtaaaattagtTTTCTTCTGACATGACCTCTGTGGTGTATCTTAACAATGCATAATTTATTCACCCTCCCACATTCTATATCAACGGATTTTACAACATGCCACATGCaaagtattattatatatttctgtgCTTTGTGTACGCTGTGACTATTTTAGGTAATTCTTTTATAATGGGCACTATTTACCTGGCTCGTGCTCTTCACACAGCAAAGTATATAGCTGTATTCAATTTGGCAGTGTCTGATTTGTGTGGTAGCTCTGTTCTTATTCCGAGGTATGTAGACATGTTTCTGTTTGATAAACAGTATATATCTTATGGAGAGTGTCTGTCaagcatgttttttgtttttctctttacgTCCATGCAGTCTTTTTCTCTGCTCGCTTTGGCCTTTGATAGAGTCATTGCTATATGTTTTCCTCTGAGGTATCATGCTATTGTCACTAAATCTACAATGATGATGATCATTGGGGTTATGTGGGTTTTGTCTGTGTTTCTTGTCACTCTTCTCGTGGCTCTGATCACCAGACTCACCTTCTGTGCATCTATAGCCACAGTAGACAGCTATTTCTGTGATCATGGTCCTGTCATCAGAATTGCATGTAATGACAATTCCATTATGGCCTTTGTTTATGctaatattgtgatttttattccatttataATAATAGCATTTTCATATGCTTGTATTGGTTTCGCATTGCTTAAGATCTCACATGGTGGTGATCGAATAAAAGCTATGAAAACATGCACTTCTCACATTATTTTAGTGACTATGTTTTATCTACCAATCTTACCTTATTTCCTTGCTCTTACAACATATTTACATCCAAATACTAGAATACTCAACTCTGTTTTAACACAAACTGTTCCACCTATGTTAAATCCCATCATATATACTCTGAAGACAGAGGAGGTGCTACAGTCTATTAAAGTACTGTACAAAGGAATGAAGGTGAACAATATAAATGACCCTGTGAAAAGAATGAAAAGTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681540.1 True 1008 mRNA 0.35 3 13215309 13216319

Neighbor

gene id symbol gene type direction distance location
LOC111195044 NA coding upstream 25392 13185677 ~ 13189917 (+)
LOC103047318 NA coding upstream 68475 13144123 ~ 13146834 (+)
LOC103041997 NA coding upstream 89242 13124499 ~ 13126067 (+)
LOC103047014 NA coding upstream 115383 13098626 ~ 13099926 (+)
LOC103041695 LOC108412888 coding upstream 174876 13038950 ~ 13040433 (+)
LOC103021350 LOC108412888 coding downstream 4654 13220973 ~ 13222688 (+)
LOC103042312 LOC108412889,LOC108410529,LOC108410536,LOC100305029,LOC108412892,LOC108412890,LOC108410535 coding downstream 25930 13242249 ~ 13243689 (+)
LOC111195046 LOC108412889,LOC108410529,LOC108410536,LOC100305029,LOC108412892,LOC108412890,LOC108410535 coding downstream 34031 13250350 ~ 13251550 (+)
LOC103021665 NA coding downstream 44769 13261088 ~ 13262232 (+)
LOC103033364 NA coding downstream 358149 13574468 ~ 13585349 (+)
G175665 NA non-coding upstream 32261 13053699 ~ 13183048 (+)
G175671 NA non-coding upstream 145608 13064228 ~ 13069701 (+)
G175645 NA non-coding upstream 315289 12899611 ~ 12900020 (+)
G175644 NA non-coding upstream 316141 12898879 ~ 12899168 (+)
G175641 NA non-coding upstream 318845 12896122 ~ 12896464 (+)
G175763 NA non-coding downstream 68618 13284937 ~ 13285718 (+)
G175771 NA non-coding downstream 96735 13313054 ~ 13315228 (+)
G175779 NA non-coding downstream 116402 13332721 ~ 13336148 (+)
G175824 NA non-coding downstream 166970 13383289 ~ 13384619 (+)
G175810 NA non-coding downstream 169913 13386232 ~ 13388819 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other upstream 470256 12739503 ~ 12745053 (+)
rnft1 rnft1 other upstream 675108 12524141 ~ 12540201 (+)
LOC103027177 tmem261,LOC103027177 other upstream 1005860 12191356 ~ 12209449 (+)
G175108 NA other upstream 1301853 11908872 ~ 11913456 (+)
G174994 NA other upstream 1778779 11429871 ~ 11436530 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 76979 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 137449 13353768 ~ 13418416 (+)
G175900 NA other downstream 463040 13679359 ~ 13685563 (+)
LOC103038733 bcl7b other downstream 582320 13798639 ~ 13889044 (+)
prdm15 LOC108413920,LOC106511912 other downstream 630943 13847262 ~ 13868855 (+)

Expression


Co-expression Network