LOC107197765


Basic Information

Item Value
gene id LOC107197765
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 19875366 ~ 19876390 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_001518763.2
acagacacacacacacacacacacaatgtaaaCTCCTGCAGCACTTCAGAAGGAGAGGGAGAATGCCTTCACACTGGTATTCCTGATCAGGTAACAGAATGCCGGAGTGAGGGCTGCTGGCGTGATTCTGCTATTAGGCTGTGAATCTGATCTGATGAGGCAGGGTTTTGGCATGACACTGTGTGTAAAGGTCAGGTTACAGTCTGTGGGATTCAGGTTTTCCCCACTGCAGGCATGGAGTAGAGGGCAGGGGTAAGTGTGACGATATTTGTGTTCTGTTctatgtattgtgtgtgtgtgtgttttttttaatcaacatggttattattaaatttaccAATTATTGTTAATTTAGTATTAACAGCATAATAGTGTTGATTGAACTCTggcaatttttttgtttagatagATTGGATAAGagaaagtagagagagagagagagtgaaaaggagaaagagaatgtgagagaagAGGAAAATAAAGCAAAGTAAGAATGTAGAAAGAGGTGAGGGAAAAATGGGAGAGTGacggatagagagagatagggagaggaGTGATGAAGTAAAGAAACAGATATAAAaagggaggagaaaaaaggcaagagagaaagagatgtagAAAGATATATGATGAAAGAAAGAGATGTGAGAAAGGAAAGACAAAGAGATACTTGAAGTGGGAAATTAAAAAGgcaaagaaggagagaaagagacaggagGAAAGGTAGAGTGGGAAAACTAGAGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_001518763.2 True 746 lncRNA 0.40 2 19875366 19876390

Neighbor

gene id symbol gene type direction distance location
erbin erbin,erbb2ip,LOC107667260,LOC107726559,LOC107705051,LOC107742960 coding upstream 223948 19594101 ~ 19651418 (+)
nln nln,LOC107705053,LOC107667266,LOC107548669 coding upstream 353293 19503557 ~ 19522073 (+)
trappc13 trappc13,LOC107667267 coding upstream 400189 19459956 ~ 19475177 (+)
ppwd1 ppwd1 coding upstream 429708 19432487 ~ 19445658 (+)
cwc27 cwc27,LOC102784682 coding upstream 549965 19261204 ~ 19325401 (+)
LOC103023409 co-prmt,LOC108428880 coding downstream 20347 19896737 ~ 19918977 (+)
pum3 pum3,k0020,LOC107705054,LOC107742987 coding downstream 43487 19919877 ~ 19932820 (+)
LOC103030097 NA coding downstream 272868 20149258 ~ 20150118 (+)
LOC103027562 NA coding downstream 276071 20152461 ~ 20155315 (+)
smad2 smad2,LOC107743055,LOC107653131 coding downstream 353137 20229527 ~ 20257745 (+)
G177830 NA non-coding upstream 42256 19795144 ~ 19833110 (+)
G177833 NA non-coding upstream 56656 19818233 ~ 19818710 (+)
G177826 tjp2 non-coding upstream 95830 19775840 ~ 19779536 (+)
G177822 NA non-coding upstream 133515 19741624 ~ 19741851 (+)
G177819 NA non-coding upstream 135768 19739380 ~ 19739598 (+)
G177861 NA non-coding downstream 13877 19890267 ~ 19890713 (+)
LOC111195063 NA non-coding downstream 73206 19949596 ~ 19955474 (+)
G177885 NA non-coding downstream 114254 19990644 ~ 19995167 (+)
G177940 NA non-coding downstream 224186 20100576 ~ 20100802 (+)
LOC111195064 NA non-coding downstream 228944 20105334 ~ 20123848 (+)
LOC103042206 LOC108428882 other upstream 99575 19750942 ~ 19775791 (+)
LOC111194983 NA other upstream 152806 19720301 ~ 19722560 (+)
LOC103024155 si:dkey-81j8.6,LOC108440140,LOC107720718,LOC107572716,LOC107678005,LOC105904646 other upstream 1316922 18539898 ~ 18558444 (+)
LOC103047412 golga7,LOC108276767,LOC107553707,LOC107687624,LOC107678053,LOC107586122 other upstream 1544877 18324873 ~ 18330489 (+)
G177219 NA other upstream 1649233 18224273 ~ 18226133 (+)
LOC103043854 NA other downstream 212848 20089238 ~ 20096711 (+)
G177950 NA other downstream 262432 20138822 ~ 20139564 (+)
ier3ip1 ier3ip1,LOC106633120 other downstream 519987 20396377 ~ 20399165 (+)
LOC103046694 LOC108440723,LOC108277161 other downstream 2250731 22127121 ~ 22315307 (+)
LOC103025565 scd5 other downstream 2579929 22456319 ~ 22465729 (+)

Expression


Co-expression Network