LOC103022678


Basic Information

Item Value
gene id LOC103022678
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 11093717 ~ 11095900 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651422.1
GAGGTGATGACCAGCCTGCCCCAGAAGATGTGCAGCCCAGACTGAACCGGATTCAGAACCAGAGCCATGTGGAAAGACCAGAATTACTTACAGACCAAACCACTGTCCAGTTTGATGTGTGGACTGAGCTGAGGGAGCTGAGGGACATGGTGGTGGAGCAGAGGGTGAAACTACAGTACAGTGAGCGCCAGATTGAGGAGCTGAAAAAAGAGAATGCAGGGCTGGCAGGGAGAGTGACCTCTACTgaagcaagagtttcctctacTGAACTGAAAGTGACCTCTACTGAACTTGGTGTTGATGCTCTAAAAGAAGAGAATAAAAagcTCACGGAAAAAGTGACCTCTACTGAAGTGAGAGTGACCTCTACTGAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651422.1 True 376 lncRNA 0.49 3 11093717 11095900

Neighbor

gene id symbol gene type direction distance location
LOC103022370 LOC103022370 coding upstream 9070 11081892 ~ 11084647 (+)
LOC103029503 NA coding upstream 74285 10925074 ~ 11019432 (+)
LOC111195029 NA coding upstream 90820 10999496 ~ 11002897 (+)
LOC107197471 NA coding upstream 255139 10830728 ~ 10838578 (+)
LOC111195105 NA coding upstream 263668 10826422 ~ 10830049 (+)
LOC103029829 NA coding downstream 17915 11113815 ~ 11125744 (+)
LOC103030157 NA coding downstream 59050 11154950 ~ 11158188 (+)
LOC103024145 kcnip1b,LOC103024145,LOC108444575,LOC107720696,LOC107552061,LOC102788752,LOC103363037,LOC107742366,LOC107676032,LOC107586147 coding downstream 154475 11250375 ~ 11322335 (+)
LOC103023833 LOC107678029 coding downstream 228988 11324888 ~ 11334033 (+)
LOC103027020 nlgn2b,LOC108443341,LOC107678031,LOC107554306,LOC107720555,LOC101475673,LOC102787387 coding downstream 654313 11750213 ~ 11865916 (+)
G174930 NA non-coding upstream 4878 11087719 ~ 11088839 (+)
G174813 NA non-coding upstream 417716 10675716 ~ 10676001 (+)
G174812 NA non-coding upstream 422546 10670898 ~ 10671171 (+)
G174811 NA non-coding upstream 426537 10666950 ~ 10667180 (+)
G174810 NA non-coding upstream 428289 10665077 ~ 10665428 (+)
G174944 NA non-coding downstream 41649 11137549 ~ 11137957 (+)
G174964 NA non-coding downstream 94581 11190481 ~ 11265122 (+)
G174983 NA non-coding downstream 305493 11401393 ~ 11401613 (+)
G174986 NA non-coding downstream 314197 11410097 ~ 11416593 (+)
G174997 NA non-coding downstream 343241 11439141 ~ 11439725 (+)
G174874 LOC108437803 other upstream 74299 10832168 ~ 11019418 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 461952 10621028 ~ 10631765 (+)
rexo2 NA other upstream 1940584 9126708 ~ 9153133 (+)
LOC103038455 NA other upstream 2541107 8548884 ~ 8552610 (+)
acer3 acer3,LOC107653723,LOC107758701,LOC107680329,LOC107743427 other upstream 2927055 8149119 ~ 8166662 (+)
G174994 NA other downstream 333971 11429871 ~ 11436530 (+)
G175108 NA other downstream 812972 11908872 ~ 11913456 (+)
LOC103027177 tmem261,LOC103027177 other downstream 1095456 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 1428241 12524141 ~ 12540201 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 1643603 12739503 ~ 12745053 (+)

Expression


Co-expression Network