LOC111195036


Basic Information

Item Value
gene id LOC111195036
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12187243 ~ 12189381 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651428.1
AAGTGTTTTCCATGCTTACCATttgagGTGGCAAAGCTAAAGGTGGAAATCAAATTCCTACATGATGAATGCACAGTTTTGAAGGAACATGTGGACAAATTAACATCTGTTCCTGACATGGCTGCAGGTccttcagCAGGATGGAGAGGGGAGAAGATTCCGCATCCTGCTTTCTGATAGacgaaaaaaaggaaaagcacaagaagaagaagatcaagaagaacaaaaaatataacattttacctAAAAGAAACATATAATCAATGatgattgtaaataaataaataaataagtttaatgTTA
>XR_002651429.1
AAGTGTTTTCCATGCTTACCATttgagGTGGCAAAGCTAAAGGTGGAAATCAAATTCCTACATGATGAATGCACAGTTTTGAAGGAACATGTGGACAAATTAACATCTGTTCCTGACATGGCTGCAGGTccttcagGATGGAGAGGGGAGAAGATTCCGCATCCTGCTTTCTGATAGacgaaaaaaaggaaaagcacaagaagaagaagatcaagaagaacaaaaaatataacattttacctAAAAGAAACATATAATCAATGatgattgtaaataaataaataaataagtttaatgTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651428.1 True 303 lncRNA 0.35 3 12187243 12189381
XR_002651429.1 False 300 lncRNA 0.34 3 12187243 12189381

Neighbor

gene id symbol gene type direction distance location
cnih2 cnih2,LOC100706298 coding upstream 36193 12144051 ~ 12151050 (+)
LOC111195107 NA coding upstream 91954 12090628 ~ 12095289 (+)
LOC107197312 NA coding upstream 194019 11988169 ~ 11993224 (+)
LOC111195033 NA coding upstream 248146 11935660 ~ 11939097 (+)
LOC103027020 nlgn2b,LOC108443341,LOC107678031,LOC107554306,LOC107720555,LOC101475673,LOC102787387 coding upstream 321327 11750213 ~ 11865916 (+)
LOC111195108 NA coding downstream 125351 12314732 ~ 12316734 (+)
ptrh2 ptrh2,LOC107744620,LOC107548881,LOC107699263,LOC107693958,LOC107747021,LOC107576753 coding downstream 484497 12673878 ~ 12692133 (+)
LOC103039534 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 coding downstream 601842 12791223 ~ 12794193 (+)
katnal1 katnal1,LOC107741157,LOC107653760,LOC107578067,LOC107697436,LOC107743395 coding downstream 606735 12796116 ~ 12809169 (+)
ubl3 ubl3,LOC107741158 coding downstream 647349 12836730 ~ 12870232 (+)
G175201 NA non-coding upstream 117921 12065278 ~ 12069322 (+)
G175169 NA non-coding upstream 149432 11983263 ~ 12037811 (+)
G175160 NA non-coding upstream 237474 11948808 ~ 11949769 (+)
G175157 NA non-coding upstream 241348 11945397 ~ 11945895 (+)
G175085 NA non-coding upstream 285696 11890741 ~ 11901547 (+)
LOC111195040 NA non-coding downstream 25319 12214700 ~ 12217838 (+)
G175237 NA non-coding downstream 29865 12219246 ~ 12219689 (+)
G175249 ints2,LOC107744627,LOC107747027,LOC107693886,LOC107699256,LOC107578473 non-coding downstream 67213 12256594 ~ 12260820 (+)
G175250 ints2,LOC107744627,LOC107699256 non-coding downstream 107411 12296792 ~ 12297319 (+)
G175272 NA non-coding downstream 130569 12319950 ~ 12326872 (+)
G175108 NA other upstream 273787 11908872 ~ 11913456 (+)
G174994 NA other upstream 750713 11429871 ~ 11436530 (+)
G174874 LOC108437803 other upstream 1167825 10832168 ~ 11019418 (+)
LOC103028819 etf1,etf1b,LOC108437808,LOC107552075 other upstream 1555478 10621028 ~ 10631765 (+)
rexo2 NA other upstream 3034110 9126708 ~ 9153133 (+)
LOC103027177 tmem261,LOC103027177 other downstream 1975 12191356 ~ 12209449 (+)
rnft1 rnft1 other downstream 334760 12524141 ~ 12540201 (+)
G175379 cltc,LOC108250671,LOC106581108,LOC107693955,LOC106612978 other downstream 550122 12739503 ~ 12745053 (+)
LOC103028411 LOC108444524,LOC107720618,LOC559907,LOC108276802 other downstream 1103917 13293298 ~ 13329018 (+)
LOC111195048 fgf13b,LOC108444526,LOC107555168,LOC107718748,LOC107548853,LOC107720625,LOC107693932 other downstream 1164387 13353768 ~ 13418416 (+)

Expression


Co-expression Network