LOC103047042


Basic Information

Item Value
gene id LOC103047042
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12606044 ~ 12645567 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651433.1
ataaataactaaatagGAAGGCCTACAGCAGCAGGGTCTGGCTGTCCTCGTGCACGCTGTGTTGTGTAAGACTTGGCAGGCTGGACTAGAATAACacccttattctctctctcagagctctgAACTCTTTCACCCTACAGCCCTGTCCTCCCCTCACTCAGCAACAGAAAGCAACAACAACTCAGAGGAGAggtgccctctctctctctttctctctctctctctgtctattccCCCTCTATCTCTGCTTCCCTTGTGTCGCACTTTCTCTTTCACCTCTCTCCACCTACATGCACGTCTCTCGTTCACTCGCCTCGTTCTCTTACCCACAGTGAGCGAGAATGAACGCACACGGCTCTCACGCGCTGCTCTGCTCCGTGCCGCCTATATGTGCGTGTGCTGGAAGGAGAAGCGCGTGCCCGTGCTGTGCCTGTTTCCCTACAGGCTTTGCATTCTCTCGGCCGTCGGTCAGACTCGGCGCTGGAGTCTTGCATTGCTCACCTTTCTGCTGTACCTGGGTACATAAGAAGAAGCTAAAAAAGAGCTTCTTCGCTATCTCATGGTCCAAGTTCCTCGATAGGACAGGATGGACAGATGGAGACTGTGAGGAGTGTGAAGAGATTTTGGAATGGGATTGACAGGTTGTGCAGATGCCAACATTTCCTAGTGCCGTTCCGGAGCTTCTTTGGAGTCATGCTTATTGGAAAAGCAATGAAAACATGCACATCCAGAGTCTTTTTTGTGATCATTACCTTCTGCAAGTTGTGGAGTGAAGCAGATGGTGTCCCTCATAGGGTGAGTAATTTAAGCTCATGACTTAATTTAGGGGGGCTCATGAACAAATGGAAAGGAGTATTTATGCGTGCATGGTTTCTGTGTGATGGGGTGGGTGGGTAAAACACCATGATGTATAGCAGAGGAGGAAAGGGTTAAATGGAAAAGTGAAGGATGGACGAGAGTCATATGTGCCACTAAGCCCCTTTGTTCTTGTTTAGGGCCTTTACCTGGGAAAACCctttactaaacaaaaactTTCTCTCACGCGTTTAtacttgaatttttttaaatgaatctaAAAACCTCTAATAGTATCTTTTGTAGGTTGACAGTCAGTATGTTCGGATATCAGCCTAGAGTCATCTGCTTAACTCCCTAACAGTCTTATTTAAGTAACAGTCCAGTTTAATGGCAGATTATTTCTCCAACGTGGTATGCAAGTTTATTTCACATGCTTcttgattgttttatttgaaCTTTATTACGTGTGATCAGAACTGAATATTTGGCTTGATTTGGCCCTATCTCGCCCTGTTTGGCTCCTATCTAATAGGAGATTGATTTTTGGGAGAGTTTAGTAGCCTGCAGATGGTGAGAATATTAAAGGCTCTGATGTATACAGTGTGATGGCTACACATCTGACAGTGTCTCTGTCAAAGCCCTGTGGCCTGTGGGCCCTCTAATCTCAACATATCACAAACACCCAGCCTGCATGCAGTCTCATATAAAGACCCCATAATAGTTCTGTGGTCTATAGTGACTGGGTGGGATACAGTGTGTGTGCGTTGGGAGACTACAGTTactacttattttattgttttcaggGGGGTTAATTCTGCATGAATACACCTGTATGCTCTAAGATGCCTCTAAATTTGACTGTTATTGTGTACCTGTATGTCATTTATTGCAAAAAGTGATGAGAGGCCTGGCCCATGACATTGTTCCAAAATTATATCTAGCTTGTGATTATATGAAATCTTGACCTATCCTGCACATACAGTGCTGAGCAAAATCTTTGACACctatgaaaattaaaataaaatctaaaagtaATTTACATCATTGTGTTTATTAACACATTCAGGCATTCACAGAGAATGCAATATGTCAGATGTACCAGTATGGCCAAATCACAAACCAATCATCTAAACCATATTTGGGTTGTAATTTTTTAAGGTGCAGGGTTATATGTCATTTCAAGTACTTTTTCCGAGTGCGATAAAAaggcatttttgttttttattaagtgtAATTGTAGATGGTAGCTTACTGGAATGTTTTCCTCACATGGGTGTCATACAGGTTGATTTATGTgcttaaaatataatcaaacatgcaacaaattaatatatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651433.1 True 2135 lncRNA 0.42 4 12606044 12645567

Neighbor

gene id symbol gene type direction distance location
med13 med13,LOC107744626,LOC107699258,LOC107693951,LOC107747042,LOC107548827 coding downstream 137362 12337212 ~ 12468682 (-)
ints2 ints2,LOC107744627,LOC107699256,LOC107747027 coding downstream 299361 12256861 ~ 12306683 (-)
wdr74 wdr74 coding downstream 467255 12119986 ~ 12138789 (-)
LOC103046645 ehd1b,LOC108414013,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding downstream 525413 12008581 ~ 12080631 (-)
cxadr cxadr coding downstream 618130 11957424 ~ 11987914 (-)
LOC103039067 cltc coding upstream 47298 12692865 ~ 12753715 (-)
btg3 btg3,LOC102786047 coding upstream 112659 12758226 ~ 12761626 (-)
alox5ap alox5ap,LOC107697405,LOC107583340,LOC107743481,LOC102776613,LOC107579207,LOC107741175 coding upstream 118621 12764188 ~ 12768958 (-)
uspl1 NA coding upstream 132444 12778011 ~ 12788981 (-)
LOC103040161 NA coding upstream 362250 13007817 ~ 13011654 (-)
G175553 NA non-coding downstream 611 12601206 ~ 12605433 (-)
G175555 NA non-coding downstream 5790 12597647 ~ 12600254 (-)
G175573 NA non-coding downstream 20772 12584291 ~ 12585272 (-)
LOC103046834 NA non-coding downstream 24307 12576368 ~ 12581737 (-)
G175566 NA non-coding downstream 39037 12566716 ~ 12567007 (-)
G175606 NA non-coding upstream 54746 12700313 ~ 12703161 (-)
G175611 NA non-coding upstream 101221 12746788 ~ 12794710 (-)
G175610 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 non-coding upstream 146677 12792244 ~ 12794302 (-)
G175619 katnal1,LOC107578067,LOC107697436,LOC107741157,LOC107653760 non-coding upstream 155339 12800906 ~ 12809051 (-)
G175626 NA non-coding upstream 191221 12836788 ~ 12837379 (-)
G175119 NA other downstream 674290 11827807 ~ 11931754 (-)
G175072 NA other downstream 962412 11643317 ~ 11643632 (-)
LOC103024982 cldn7,LOC108444573,LOC107552057,LOC107586151,LOC107676017,LOC107678043,LOC107720692 other downstream 1146014 11442311 ~ 11460030 (-)
LOC103030477 NA other downstream 1202343 11397549 ~ 11403701 (-)
LOC103034963 fgf18,LOC103034963,LOC108437818,LOC108276546,LOC107588396,LOC107747128,LOC107660900 other downstream 1934563 10661604 ~ 10671481 (-)
G175647 NA other upstream 251473 12897040 ~ 12898630 (-)
G175707 NA other upstream 343370 12988937 ~ 12996934 (-)
LOC111195039 NA other upstream 357820 13003387 ~ 13007061 (-)
LOC103044870 NA other upstream 606590 13252157 ~ 13254568 (-)
LOC111195047 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926,LOC107688028,LOC107689570,LOC107565351 other upstream 759714 13405281 ~ 13407280 (-)

Expression


Co-expression Network