LOC111195042


Basic Information

Item Value
gene id LOC111195042
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 12853333 ~ 12859954 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651435.1
AAATAGGCcattcatgcaaaaaaaagggggggccaaatttaaacaactatgcaAAGAAGTGTGGGCCTCCACAGAGATGCTATTTGCCAACCACTTACTAAGTTTAgggacaaatactttttcacatagaGCAAGGTTGATTTGTATAGATTAATAAATGAGATAATTTTTTCAAATCTGCTTTtggtatttactcaggttatcacACCAGTGTAATTATATGTATTAATAGAAGGTTGACACAATTCTAATGCCTGCACATGTAAAGTTTCCCACTATGACACCTTCCTCCAACGATTCAAgacaccttgccatgagcacgctgGCAACATCGTACACACCTCAACGATAACAACAATAACACCTCATAACCTATACAGGGTCAATGCCTTCGGTGCTGATCGTGGGTGTTTGGAACTACCAAACCTTCTCTGATCCAGCGACAGCCCTTCCCAGCTCAAATGGAAAAAACCCAAGAACAACATGACATAATCAACTCTCAGAAGACTCTCACAGCCCAACAAGCTAATGCATCTGTAGGGGTTCCCTCCCAGCAGATACTGAACCCTCCCTTCaaactgaaaataaactgagctaagtacatttcacacattttttaaagtacacaatgaaagaaaatacataAGTAATGCAGTAAAACCTTTAACATCAGCAAcataatctttttattttatttttccattttgctgcttttgttaaactaaaaaaaaaaaatcaggtccaaaatgtgattaattgcTAAGCAGATTctggtagttttactgtatatgtattattaatatttattcatttttgtgtGTCTAGGCTTCTATATAGATCTGTGGCTTATTCTACAGTCAGGAGTATGCAGAATATTAAGGATATAAATTAATGCTTTGATTACTatagggtttactttgtcccacaaattGCACAGAATTGCACAATATATCAGTACGCCTTTAAAGGAAAATAGTTGTAGAATGTAAGCAATTTTTACTGTGCAATCtgcaacatatttataaaacagaacctcAAACAGAGATTTTGCTTTAACACAGCTTCCTTATCAATAGTCCTATAAACAGaccaaaaatactttaaatgttCAACAAGATATTTATCAAatgttctattgcacaagtaaaaCACTAGGTAattatcaatttacaatatgttattctTGAAGTAATGgcattttagtattaaaatggCTGTTGGTCAGTCTCCCacctttctccagttaacaaataaaaaaatcctaactTATATGTGCATTAACATTATCCTTcatgttacatttttaaattataaaaaaagggttttgctGCTTTTGGAGTGTTCTTGCCCTAGTAATTCAGCATTTTATGGCGTTTTATCCACATAAATTATTGATTGAAGgtgattgtttttgtgttttcattaggCTTGTCACATTAAAGCtttaattttgattaattaatcacagaaaatataatccatTAACAAAGTGCACACTTTCTTTAATCGCCTGACAGCACTATTGAATGAATTGGTATTTAGTATGTTATCAAAATATCTAACTGTAAAGCAAATgtctaaaagcaaagaaaatgtaaatgtaaaaggcAGAAAGCAGAATATACAACCAAATACATTTATCAATTGTCTACCTAAATACATGCAAATGATTATTTGTTATTGATGCTTTATACAAAGATTGCTGTtagcacaaaaaataaatgatctcATCAGGAAGACATTTCAATATTAAGATGTAGGTAGTGCTGATGACACAGAAGGTAAGGAATGATGCATTTGGGGCcttgtttgtgtaaaatcctgcaGGGAACACTGAGACTACAGCTAGACAATCAACAAAAGAGAACAGCGCAGTGGTTGCTCCcagcagagagagggagagagaagagagagagagagagagagagagagagagagagagagagagagagcagggtgAGCAGATAAAGAAATGCGTTGGCACTAATCAGGGAGCCAAGCGAAATGAAAAGCAGCCACAACAAATGCTGACCGAGGTGGACATGGCGGGTCGACCAGCTCTGCCCATCTCAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651435.1 True 2075 lncRNA 0.35 2 12853333 12859954

Neighbor

gene id symbol gene type direction distance location
uspl1 NA coding downstream 64352 12778011 ~ 12788981 (-)
alox5ap alox5ap,LOC107697405,LOC107583340,LOC107743481,LOC102776613,LOC107579207,LOC107741175 coding downstream 84375 12764188 ~ 12768958 (-)
btg3 btg3,LOC102786047 coding downstream 91707 12758226 ~ 12761626 (-)
LOC103039067 cltc coding downstream 99618 12692865 ~ 12753715 (-)
med13 med13,LOC107744626,LOC107699258,LOC107693951,LOC107747042,LOC107548827 coding downstream 384651 12337212 ~ 12468682 (-)
LOC103040161 NA coding upstream 147863 13007817 ~ 13011654 (-)
LOC103041391 LOC108439213 coding upstream 157572 13017526 ~ 13019489 (-)
LOC107197005 NA coding upstream 406720 13266674 ~ 13267839 (-)
LOC103021997 NA coding upstream 416013 13275967 ~ 13277821 (-)
f9 NA coding upstream 469040 13328994 ~ 13337460 (-)
G175626 NA non-coding downstream 15954 12836788 ~ 12837379 (-)
G175619 katnal1,LOC107578067,LOC107697436,LOC107741157,LOC107653760 non-coding downstream 44282 12800906 ~ 12809051 (-)
G175611 NA non-coding downstream 58623 12746788 ~ 12794710 (-)
G175610 hmgb1a,LOC100304841,LOC108439208,LOC107653759,LOC107583338,LOC107578084 non-coding downstream 59031 12792244 ~ 12794302 (-)
G175606 NA non-coding downstream 150172 12700313 ~ 12703161 (-)
G175632 NA non-coding upstream 10118 12870072 ~ 12871807 (-)
G175646 NA non-coding upstream 36171 12896125 ~ 12896419 (-)
G175648 NA non-coding upstream 38801 12898755 ~ 12899269 (-)
G175649 NA non-coding upstream 39361 12899315 ~ 12900601 (-)
LOC111195038 NA non-coding upstream 142535 13002489 ~ 13028523 (-)
G175583 NA other downstream 229778 12623211 ~ 12623555 (-)
G175119 NA other downstream 921579 11827807 ~ 11931754 (-)
G175072 NA other downstream 1209701 11643317 ~ 11643632 (-)
LOC103024982 cldn7,LOC108444573,LOC107552057,LOC107586151,LOC107676017,LOC107678043,LOC107720692 other downstream 1393303 11442311 ~ 11460030 (-)
LOC103030477 NA other downstream 1449632 11397549 ~ 11403701 (-)
G175647 NA other upstream 37086 12897040 ~ 12898630 (-)
G175707 NA other upstream 128983 12988937 ~ 12996934 (-)
LOC111195039 NA other upstream 143433 13003387 ~ 13007061 (-)
LOC103044870 NA other upstream 392203 13252157 ~ 13254568 (-)
LOC111195047 LOC107688027,LOC107751101,LOC107731862,LOC106606817,LOC106579815,LOC107570926,LOC107688028,LOC107689570,LOC107565351 other upstream 545327 13405281 ~ 13407280 (-)

Expression


Co-expression Network